AT4G31320

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006199
Physical Location & Seq
Reverse (-)
15193709 .. 15194665
957 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31320.1

Sequence Viewer

Length: 570 bp
ATGGAGGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAGAAATGGCGAAAAGTTGCACACGCATCAAAACAAGCCAACAACAACAAGATCGACAACGTAGATGACAGCAACAACAACATCAGCATCAACATCAACAACAATGGAAGTGGAAGTGGAAGTGGAAGCAAGAGCATCAAGTTTCTGAAGAGAACACTATCCTTCACAGACACAACAGCTATTCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAACAGAGTACCTTAGCCACCAAGCTTTCCATGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGGGTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTGCTGTGTTCGAGAGCATTTTGAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGACCACTCAAGAGTGCAGATTCAATGCCACAAGTGAGGAAGTGATGAGTTATCGTCATCCTTCGGATTGCCCGAGGACACCATCTCACCAACCTCACAGCCCAATGTGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

189

Amino Acids

21.42

Weight (kDa)

8.99

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 51 - 142 5.4e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 2 cut(s) 305, 452
AgsI TTSAA 4 cut(s) 47, 365, 421, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 5 cut(s) 43, 236, 257, 320, 371
AluI AGCT 5 cut(s) 43, 236, 257, 320, 371
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 526
AoxI GGCC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 533
AvaI CYCGRG 1 cut(s) 526
BccI CCATC 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 526
BmsI GCATC 4 cut(s) 92, 153, 201, 436
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 3 cut(s) 41, 400, 447
BsaJI CCNNGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 1 cut(s) 511
BseRI GAGGAG 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 490
BshFI GGCC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 265
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 526
Bsp143I GATC 3 cut(s) 33, 51, 108
BspANI GGCC 1 cut(s) 8
BspPI GGATC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 527
BssMI GATC 3 cut(s) 33, 51, 108
Bst6I CTCTTC 2 cut(s) 200, 345
BstDEI CTNAG 2 cut(s) 253, 308
BstF5I GGATG 1 cut(s) 511
BstKTI GATC 3 cut(s) 36, 54, 111
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 3 cut(s) 33, 51, 108
BstMWI GCNNNNNNNGC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 511
Csp6I GTAC 2 cut(s) 304, 451
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 1 cut(s) 326
CviQI GTAC 2 cut(s) 304, 451
DdeI CTNAG 2 cut(s) 253, 308
DpnI GATC 3 cut(s) 35, 53, 110
DpnII GATC 3 cut(s) 33, 51, 108
Eam1104I CTCTTC 2 cut(s) 200, 345
EarI CTCTTC 2 cut(s) 200, 345
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 526
FaeI CATG 1 cut(s) 329
FaiI YATR 1 cut(s) 327
FatI CATG 1 cut(s) 325
FokI GGATG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 1 cut(s) 329
HindIII AAGCTT 2 cut(s) 41, 318
HinfI GANTC 2 cut(s) 385, 474
HphI GGTGA 1 cut(s) 533
Hpy188I TCNGA 3 cut(s) 29, 204, 520
Hpy188III TCNNGA 4 cut(s) 58, 379, 409, 464
HpyAV CCTTC 3 cut(s) 229, 265, 525
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 77, 471, 564
HpyF10VI GCNNNNNNNGC 1 cut(s) 561
HpyF3I CTNAG 2 cut(s) 253, 308
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 329
Kzo9I GATC 3 cut(s) 33, 51, 108
LpnPI CCDG 2 cut(s) 357, 467
LweI GCATC 4 cut(s) 92, 153, 201, 436
MaeII ACGT 1 cut(s) 117
MalI GATC 3 cut(s) 35, 53, 110
MboI GATC 3 cut(s) 33, 51, 108
MboII GAAGA 4 cut(s) 217, 359, 362, 433
MflI RGATCY 1 cut(s) 51
MnlI CCTC 7 cut(s) 65, 268, 375, 424, 484, 522, 558
MseI TTAA 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 561
NdeII GATC 3 cut(s) 33, 51, 108
NlaIII CATG 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 524
PfeI GAWTC 2 cut(s) 385, 474
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 2 cut(s) 305, 452
RsaNI GTAC 2 cut(s) 304, 451
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 3 cut(s) 33, 51, 108
SetI ASST 9 cut(s) 45, 120, 238, 259, 309, 322, 373, 456, 550
SfaNI GCATC 4 cut(s) 92, 153, 201, 436
SmlI CTYRAG 3 cut(s) 56, 379, 462
SmoI CTYRAG 3 cut(s) 56, 379, 462
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 111, 408
TfiI GAWTC 2 cut(s) 385, 474
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.