FvH4_6g36860

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006199
Physical Location & Seq
Reverse (-)
28932259 .. 28933217
959 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36860.t1

Sequence Viewer

Length: 558 bp
ATGGAGTCCAAGAAGTCTAACAAGATCAGAGAGATTGTTAGGCTCCAACAGATCCTCAAGAAGTGGAAAAAGCTTGCAAATGCCCCTAAGCACAACAACACTGCCCCCGCCATTACCTATCCATCATCAACCACCACTACTACTACAACTCCAAGCAGCAATGGCAGCAGAGGCATCAAGTTCCTCAAGAGAACACTCTCCTTCACAGACGTCTCTGCGGCTCATCAGAGCGACGTCGTCCCAAAAGGGTTTCTCGCCGTTTGTGTTGGCAAGGAGCTCAAGAGGTTTATCATCCCAACCGAGTACTTGGGCCACCAAGCGTTTCGGATTCTGCTCCGGGAAGCAGAGGAGGAGTTCGGGTTCCAGCAAGCGGGCGTGCTCAAGATTCCGTGTGAGGTGTCTGTCTTTGAGAAGATCTTGAAGGTGGTTGAAGAGAAAAGGGAAGTCTTCTTCTTGCATGAGTTTGGATTCAGTGCAGAGAATGACATGATTGGTTCTTGCTCATCTCCATCAGATTGTGAGCTTACACCTTCTCATCATCCCCAAATGTGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

186

Amino Acids

20.8

Weight (kDa)

9.11

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 18 - 142 4.2e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 213, 237
AciI CCGC 3 cut(s) 108, 218, 371
AclWI GGATC 1 cut(s) 46
AcyI GRCGYC 2 cut(s) 210, 234
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 2 cut(s) 421, 431
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 3 cut(s) 73, 277, 523
AluI AGCT 3 cut(s) 73, 277, 523
Alw21I GWGCWC 2 cut(s) 279, 381
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 46
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 156, 165
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 338
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 439
Bbv12I GWGCWC 2 cut(s) 279, 381
BbvI GCAGC 2 cut(s) 168, 177
BccI CCATC 2 cut(s) 130, 517
BceAI ACGGC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 217
BglII AGATCT 1 cut(s) 414
BisI GCNGC 3 cut(s) 157, 166, 219
BlsI GCNGC 3 cut(s) 158, 167, 220
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 44, 362
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 439
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 4 cut(s) 41, 170, 263, 365
BpuMI CCSGG 1 cut(s) 338
BsaHI GRCGYC 2 cut(s) 210, 234
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 166
BseGI GGATG 2 cut(s) 291, 538
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 362, 365
BseXI GCAGC 2 cut(s) 168, 177
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 1 cut(s) 312
BsiHKAI GWGCWC 2 cut(s) 279, 381
BsiSI CCGG 1 cut(s) 337
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 279, 381
Bsp143I GATC 3 cut(s) 24, 51, 414
BspACI CCGC 3 cut(s) 108, 218, 371
BspANI GGCC 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 44, 362
BspPI GGATC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 166
BssMI GATC 3 cut(s) 24, 51, 414
BssNI GRCGYC 2 cut(s) 210, 234
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 2 cut(s) 210, 234
BstC8I GCNNGC 4 cut(s) 75, 369, 373, 377
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 291, 538
BstKTI GATC 3 cut(s) 27, 54, 417
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 3 cut(s) 24, 51, 414
BstMWI GCNNNNNNNGC 3 cut(s) 162, 165, 171
BstSCI CCNGG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 168, 177
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 2 cut(s) 51, 414
BstYI RGATCY 2 cut(s) 51, 414
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 291, 538
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 478
Cac8I GCNNGC 4 cut(s) 75, 369, 373, 377
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 304
CviAII CATG 2 cut(s) 458, 487
CviJI RGCY 6 cut(s) 43, 73, 221, 277, 312, 523
CviKI_1 RGCY 6 cut(s) 43, 73, 221, 277, 312, 523
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 87
DpnI GATC 3 cut(s) 26, 53, 416
DpnII GATC 3 cut(s) 24, 51, 414
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 2 cut(s) 461, 490
FaiI YATR 2 cut(s) 459, 488
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 457, 486
FauI CCCGC 2 cut(s) 115, 364
Fnu4HI GCNGC 3 cut(s) 157, 166, 219
FokI GGATG 2 cut(s) 278, 525
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 3 cut(s) 157, 166, 219
GluI GCNGC 3 cut(s) 157, 166, 219
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 337
Hin1I GRCGYC 2 cut(s) 210, 234
Hin1II CATG 2 cut(s) 461, 490
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 4 cut(s) 5, 328, 385, 468
HpaII CCGG 1 cut(s) 337
Hpy188I TCNGA 4 cut(s) 29, 228, 327, 514
Hpy188III TCNNGA 5 cut(s) 58, 187, 280, 382, 418
Hpy99I CGWCG 2 cut(s) 236, 239
HpyAV CCTTC 3 cut(s) 211, 415, 540
HpyCH4IV ACGT 2 cut(s) 210, 234
HpyCH4V TGCA 3 cut(s) 77, 457, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 165, 171
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 2 cut(s) 210, 234
Hsp92I GRCGYC 2 cut(s) 210, 234
Hsp92II CATG 2 cut(s) 461, 490
Kzo9I GATC 3 cut(s) 24, 51, 414
LmnI GCTCC 3 cut(s) 48, 274, 339
LpnPI CCDG 2 cut(s) 350, 377
Lsp1109I GCAGC 2 cut(s) 168, 177
LweI GCATC 1 cut(s) 183
MaeII ACGT 2 cut(s) 210, 234
MalI GATC 3 cut(s) 26, 53, 416
MboI GATC 3 cut(s) 24, 51, 414
MboII GAAGA 4 cut(s) 424, 439, 442, 443
MflI RGATCY 2 cut(s) 51, 414
MhlI GDGCHC 2 cut(s) 279, 381
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 7 cut(s) 65, 164, 194, 276, 340, 343, 388
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 162, 165, 171
NciI CCSGG 1 cut(s) 338
NdeII GATC 3 cut(s) 24, 51, 414
NlaIII CATG 2 cut(s) 461, 490
NlaIV GGNNCC 2 cut(s) 44, 362
PfeI GAWTC 3 cut(s) 328, 385, 468
PflFI GACNNNGTC 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 3 cut(s) 158, 167, 220
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 44, 362
PspPI GGNCC 1 cut(s) 310
PsuI RGATCY 2 cut(s) 51, 414
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SacI GAGCTC 1 cut(s) 279
SatI GCNGC 3 cut(s) 157, 166, 219
Sau3AI GATC 3 cut(s) 24, 51, 414
Sau96I GGNCC 1 cut(s) 310
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 2 cut(s) 279, 381
SfaNI GCATC 1 cut(s) 183
SmlI CTYRAG 4 cut(s) 56, 185, 278, 380
SmoI CTYRAG 4 cut(s) 56, 185, 278, 380
SsiI CCGC 3 cut(s) 108, 218, 371
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 336
TaiI ACGT 2 cut(s) 213, 237
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 3 cut(s) 328, 385, 468
TscAI CASTG 2 cut(s) 106, 478
TseI GCWGC 2 cut(s) 156, 165
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 2 cut(s) 106, 478
Tth111I GACNNNGTC 1 cut(s) 236
ZraI GACGTC 2 cut(s) 211, 235
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.