Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006199

Physical Location & Seq

Genomic Coordinates Forward (+)

1785030 .. 1786044

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G023900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATTCAAAGAAGTCTAACAAGATCAGAGAGATTGTTAGGCTCCAACAGATCCTAAAGAAGTGGAAGAAGCTAGCAAATGCCCCTAAAAACACAAACCCCAGCACCAATTCATCCTCAACCAACAGCACAAATAGTCTCAACAGTTCTACTTCTACTTCTACTAGCAGCAGCAGAAGCATGAAGTTTATTAAGAGAACACTCTCCTTCTCAGATGTCTCAGCTGCTCAAAACGACGTTGTACCTAAAGGCTTTCTTGCCATCTGTGTTGGGAAGGAGCTGAAGAGATTCATCATCCCAACTGAGTACTTGGGGCACCAAGCTTTTCGGATTCTGCTCCGGGAAGCCGAAGAGGAGTTCGGGTTTCAGCAAGAAGGTGTGCTCAAGATTCCGTGTGAAGTGCCTGTATTCGAGAAGATCTTGAAGGTGGTTGAAGAGAAAAGGGAGGTGTTCTTCTTGCACAATGAGTTTGGATTCATTAGTGCAGAGAAAGACAAGATTGGTTTTTGCTCCTCTCCATCAGATTGTGAGCTTACACCTTCTCATCACCCCCAAATGTGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

189

Amino Acids

21.23

Weight (kDa)

9.22

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24400 AT4G31320
fragaria_vesca	FvH4_2g36430 FvH4_6g36860
malus_domestica	MD08G1124000.v1.1 MD09G1166200.v1.1 MD15G1102700.v1.1 MD17G1161400.v1.1
prunus_persica	Prupe.1G455700_v2.0.a1 Prupe.3G023900_v2.0.a1
pyrus_communis	pycom08g10280
rosa_chinensis	RchiOBHm_Chr2g0149251 RchiOBHm_Chr6g0305471
rosa_laevigata	RLG00000010889 RLG00000020387
rosa_multiflora	Rmu_sc0001615.1_g000010 Rmu_sc0007817.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098270 Rroxscaffold_7G00162790
rosa_rugosa	Rorug02G0410000 Rorug06G0340400
rosa_samantha	Rh2AG470800 Rh2BG483000 Rh2CG456700 Rh2DG492000
rosa_wichuraiana	Rw2G038290 Rw6G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	243, 308
AgsI	TTSAA	3 cut(s)	9, 424, 434
AluBI	AGCT	5 cut(s)	73, 224, 280, 323, 532
AluI	AGCT	5 cut(s)	73, 224, 280, 323, 532
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	143, 223
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	168, 171, 224
Asp700I	GAANNNNTTC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	539
AsuNHI	GCTAGC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	180, 183, 211
BccI	CCATC	2 cut(s)	269, 526
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	143, 223
BfaI	CTAG	2 cut(s)	74, 165
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	3 cut(s)	169, 172, 225
BlsI	GCNGC	3 cut(s)	170, 173, 226
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	341
BmiI	GGNNCC	2 cut(s)	44, 317
BmrFI	CCNGG	1 cut(s)	341
BmtI	GCTAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
BseGI	GGATG	2 cut(s)	113, 294
BseMII	CTCAG	3 cut(s)	225, 234, 294
BseRI	GAGGAG	2 cut(s)	368, 502
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	180, 183, 211
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	504
BshNI	GGYRCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	340
BsmAI	GTCTC	2 cut(s)	143, 223
Bsp1286I	GDGCHC	2 cut(s)	318, 384
Bsp143I	GATC	3 cut(s)	24, 51, 417
BspCNI	CTCAG	3 cut(s)	224, 233, 295
BspLI	GGNNCC	2 cut(s)	44, 317
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	315
BssMI	GATC	3 cut(s)	24, 51, 417
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	3 cut(s)	278, 345, 429
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	211, 220, 303
BstF5I	GGATG	2 cut(s)	113, 294
BstKTI	GATC	3 cut(s)	27, 54, 420
BstMAI	GTCTC	2 cut(s)	143, 223
BstMBI	GATC	3 cut(s)	24, 51, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	3 cut(s)	180, 183, 211
BstX2I	RGATCY	2 cut(s)	51, 417
BstYI	RGATCY	2 cut(s)	51, 417
BtsCI	GGATG	2 cut(s)	113, 294
Cac8I	GCNNGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	242, 307
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	8 cut(s)	43, 73, 224, 252, 280, 323, 347, 532
CviKI_1	RGCY	8 cut(s)	43, 73, 224, 252, 280, 323, 347, 532
CviQI	GTAC	2 cut(s)	242, 307
DdeI	CTNAG	3 cut(s)	211, 220, 303
DpnI	GATC	3 cut(s)	26, 53, 419
DpnII	GATC	3 cut(s)	24, 51, 417
Eam1104I	CTCTTC	3 cut(s)	278, 345, 429
EarI	CTCTTC	3 cut(s)	278, 345, 429
Eco57I	CTGAAG	1 cut(s)	302
FaeI	CATG	1 cut(s)	184
FaiI	YATR	1 cut(s)	182
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	169, 172, 225
FokI	GGATG	2 cut(s)	100, 281
Fsp4HI	GCNGC	3 cut(s)	169, 172, 225
FspBI	CTAG	2 cut(s)	74, 165
GluI	GCNGC	3 cut(s)	169, 172, 225
GsaI	CCCAGC	1 cut(s)	105
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	5 cut(s)	5, 288, 331, 388, 474
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	4 cut(s)	29, 214, 330, 523
Hpy188III	TCNNGA	3 cut(s)	385, 412, 421
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	5 cut(s)	217, 268, 368, 418, 549
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	460, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	3 cut(s)	211, 220, 303
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	24, 51, 417
LmnI	GCTCC	4 cut(s)	48, 277, 342, 515
LpnPI	CCDG	3 cut(s)	115, 353, 417
Lsp1109I	GCAGC	3 cut(s)	180, 183, 211
MaeI	CTAG	2 cut(s)	74, 165
MaeII	ACGT	1 cut(s)	237
MalI	GATC	3 cut(s)	26, 53, 419
MboI	GATC	3 cut(s)	24, 51, 417
MboII	GAAGA	6 cut(s)	79, 295, 362, 427, 445, 446
MflI	RGATCY	2 cut(s)	51, 417
MhlI	GDGCHC	2 cut(s)	318, 384
MluCI	AATT	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	127, 346, 439, 523
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	3 cut(s)	24, 51, 417
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	44, 317
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	5 cut(s)	5, 288, 331, 388, 474
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	170, 173, 226
PspFI	CCCAGC	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	44, 317
PsuI	RGATCY	2 cut(s)	51, 417
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	243, 308
RsaNI	GTAC	2 cut(s)	242, 307
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	169, 172, 225
Sau3AI	GATC	3 cut(s)	24, 51, 417
ScaI	AGTACT	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	2 cut(s)	318, 384
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	109
SspMI	CTAG	2 cut(s)	74, 165
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	411
TasI	AATT	1 cut(s)	109
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	5 cut(s)	5, 288, 331, 388, 474
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	3 cut(s)	168, 171, 224
TspDTI	ATGAA	4 cut(s)	102, 197, 280, 466
TspGWI	ACGGA	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	2 cut(s)	74, 165
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.