Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003140

Physical Location & Seq

Genomic Coordinates Reverse (-)

10742623 .. 10745819

Gene Structure 3197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25220.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAGAGAGCTTCTTCTTCTTCTTCTTCTTCATTTTCAGTCTCTAATTCTTTTGATGATCTTCATCACTGTCTCTGCTTCTTCTGCTTCAAATCCTTCTTTAGCTCCTGTTTACTCTTCCATGGCTACATTCTCTCCTCGAATCCAAATGGGAAGTGGTGAAGAAGATAGATTTGATGCTCATAAGAAACTTCTGATTGGTCTCATAATCAGTTTCTCTTCTCTTGGCCTTATAATCTTGTTCTGTTTTGGCTTTTGGGTTTATCGCAAGAACCAATCTCCAAAATCCATCAACAACTCAGATTCTGAGAGTGGGAATTCATTTTCCTTGTTAATGAGACGACTTGGCTCGATTAAAACTCAGAGAAGAACTTCTATCCAAAAGGGTTACGTGCAATTTTTCGATATCAAGACCCTCGAGAAAGCGACAGGCGGTTTTAAAGAAAGTAGTGTAATCGGACAAGGCGGTTTCGGATGCGTTTACAAGGGTTGTTTGGACAATAACGTTAAAGCAGCGGTCAAGAAGATCGAGAACGTTAGCCAAGAAGCAAAACGAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACTCGAACGTTATATCATTGTTGGGCTCTGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGAGAAAGGATCATTAGATGAACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGCACATGCGTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATTGTCGTCCACCAGTTATCCACAGAGATTTGAAATCTTCGAATATTCTTCTTGATTCTTCCTTCAACGCCAAGATTTCAGATTTCGGTCTTGCTGTATCGCTGGATGAACATGGCAAGAACAACATTAAACTCTCTGGGACACTTGGTTATGTTGCCCCGGAATACCTCCTTGACGGAAAACTGACGGATAAGAGTGATGTTTATGCATTTGGGGTAGTTCTGCTTGAACTCTTGTTGGGTAGACGACCAGTTGAAAAATTAACTCCAGCTCAATGCCAATCTCTTGTAACTTGGGCAATGCCACAACTTACCGATAGATCCAAGCTTCCAAACATTGTGGATGCCGTTATAAAAGATACAATGGATCTCAAACACTTATACCAGGTAGCAGCCATGGCTGTGTTGTGCGTGCAGCCAGAACCAAGTTACCGGCCGTTGATAACCGATGTTCTTCACTCACTTGTTCCACTGGTTCCGGTAGAGCTAGGAGGGACTCTCCGGTTAACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

432

Amino Acids

47.9

Weight (kDa)

8.73

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	147 - 349	6.3e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	149 - 356	1e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT4G32000 AT4G32000 AT4G32000 AT4G32000 AT5G11020 AT5G11020 AT5G11020 AT5G11020
fragaria_vesca	FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240
malus_domestica	MD08G1154200.v1.1 MD15G1131500.v1.1
prunus_persica	Prupe.1G486900_v2.0.a1 Prupe.1G486900_v2.0.a1
pyrus_communis	pycom08g13380 pycom15g11870
rosa_chinensis	RchiOBHm_Chr6g0297161
rosa_laevigata	RLG00000011626
rosa_multiflora	Rmu_sc0005385.1_g000026
rosa_roxburghii	Rroxscaffold_7G00170830
rosa_rugosa	Rorug06G0269300 Rorug06G0269400
rosa_samantha	Rh6AG380500
rosa_wichuraiana	Rw6G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	233, 1136
AccI	GTMKAC	1 cut(s)	1027
AciI	CCGC	3 cut(s)	432, 465, 515
AclI	AACGTT	3 cut(s)	504, 534, 603
AclWI	GGATC	5 cut(s)	583, 682, 718, 1098, 1158
AcoI	YGGCCR	1 cut(s)	1217
AcsI	RAATTY	2 cut(s)	316, 557
AfiI	CCNNNNNNNGG	1 cut(s)	707
AgsI	TTSAA	5 cut(s)	90, 817, 850, 1013, 1040
AjnI	CCWGG	1 cut(s)	1167
AluBI	AGCT	8 cut(s)	10, 104, 661, 716, 758, 1055, 1111, 1270
AluI	AGCT	8 cut(s)	10, 104, 661, 716, 758, 1055, 1111, 1270
Alw26I	GTCTC	4 cut(s)	45, 76, 206, 331
AlwI	GGATC	5 cut(s)	583, 682, 718, 1098, 1158
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	2 cut(s)	416, 640
AoxI	GGCC	3 cut(s)	226, 698, 1217
ApeKI	GCWGC	3 cut(s)	512, 1175, 1198
ApoI	RAATTY	2 cut(s)	316, 557
Asp700I	GAANNNNTTC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	944
AsuHPI	GGTGA	1 cut(s)	170
AsuII	TTCGAA	1 cut(s)	824
AvaI	CYCGRG	2 cut(s)	416, 640
BaeI	ACNNNNGTAYC	2 cut(s)	755, 788
BanII	GRGCYC	1 cut(s)	623
BauI	CACGAG	1 cut(s)	705
BbvI	GCAGC	3 cut(s)	524, 1187, 1210
BccI	CCATC	2 cut(s)	296, 600
BceAI	ACGGC	2 cut(s)	1115, 1204
BciT130I	CCWGG	1 cut(s)	1169
BcnI	CCSGG	1 cut(s)	944
BcoDI	GTCTC	4 cut(s)	45, 76, 206, 331
BfaI	CTAG	3 cut(s)	759, 767, 1271
BisI	GCNGC	3 cut(s)	513, 1176, 1199
BlsI	GCNGC	3 cut(s)	514, 1177, 1200
Bme1390I	CCNGG	2 cut(s)	944, 1169
BmeT110I	CYCGRG	2 cut(s)	416, 640
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	1 cut(s)	1260
BmrFI	CCNGG	2 cut(s)	944, 1169
BmsI	GCATC	3 cut(s)	166, 464, 1117
BplI	GAGNNNNNCTC	2 cut(s)	1266, 1298
BpmI	CTGGAG	1 cut(s)	1035
Bpu14I	TTCGAA	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	944
BsaAI	YACGTR	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	120, 942, 1179
BsaWI	WCCGGW	2 cut(s)	1261, 1284
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse118I	RCCGGY	1 cut(s)	1215
Bse1I	ACTGG	3 cut(s)	797, 1034, 1260
Bse3DI	GCAATG	1 cut(s)	1089
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	1169
BseDI	CCNNGG	3 cut(s)	120, 942, 1179
BseGI	GGATG	3 cut(s)	479, 895, 1132
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	3 cut(s)	297, 312, 374
BseNI	ACTGG	3 cut(s)	797, 1034, 1260
BseRI	GAGGAG	1 cut(s)	126
BseX3I	CGGCCG	1 cut(s)	1217
BseXI	GCAGC	3 cut(s)	524, 1187, 1210
BsgI	GTGCAG	1 cut(s)	1217
Bsh1285I	CGRYCG	1 cut(s)	1220
BshFI	GGCC	3 cut(s)	228, 700, 1219
BsiEI	CGRYCG	1 cut(s)	1220
BsiHKCI	CYCGRG	2 cut(s)	416, 640
BsiSI	CCGG	4 cut(s)	944, 1216, 1262, 1285
BslFI	GGGAC	2 cut(s)	937, 1291
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	4 cut(s)	45, 76, 206, 331
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	2 cut(s)	937, 1291
BsnI	GGCC	3 cut(s)	228, 700, 1219
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	2 cut(s)	416, 640
Bsp119I	TTCGAA	1 cut(s)	824
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp143I	GATC	7 cut(s)	57, 525, 588, 674, 710, 1103, 1150
Bsp19I	CCATGG	2 cut(s)	120, 1179
BspACI	CCGC	3 cut(s)	432, 465, 515
BspANI	GGCC	3 cut(s)	228, 700, 1219
BspCNI	CTCAG	3 cut(s)	298, 311, 373
BspLI	GGNNCC	1 cut(s)	1260
BspPI	GGATC	5 cut(s)	583, 682, 718, 1098, 1158
BspT104I	TTCGAA	1 cut(s)	824
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	1 cut(s)	1215
BsrI	ACTGG	3 cut(s)	797, 1034, 1260
BssAI	RCCGGY	1 cut(s)	1215
BssECI	CCNNGG	3 cut(s)	120, 942, 1179
BssMI	GATC	7 cut(s)	57, 525, 588, 674, 710, 1103, 1150
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	2 cut(s)	120, 1179
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	1169
Bst4CI	ACNGT	2 cut(s)	70, 690
Bst6I	CTCTTC	2 cut(s)	121, 223
BstBAI	YACGTR	1 cut(s)	391
BstBI	TTCGAA	1 cut(s)	824
BstC8I	GCNNGC	2 cut(s)	628, 1196
BstDEI	CTNAG	3 cut(s)	298, 306, 360
BstDSI	CCRYGG	2 cut(s)	120, 1179
BstF5I	GGATG	3 cut(s)	479, 895, 1132
BstKTI	GATC	7 cut(s)	60, 528, 591, 677, 713, 1106, 1153
BstMAI	GTCTC	4 cut(s)	45, 76, 206, 331
BstMBI	GATC	7 cut(s)	57, 525, 588, 674, 710, 1103, 1150
BstMCI	CGRYCG	1 cut(s)	1220
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 627, 1181
BstNI	CCWGG	1 cut(s)	1169
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	2 cut(s)	942, 1167
BstV1I	GCAGC	3 cut(s)	524, 1187, 1210
BstX2I	RGATCY	3 cut(s)	588, 1103, 1150
BstYI	RGATCY	3 cut(s)	588, 1103, 1150
BstZI	CGGCCG	1 cut(s)	1217
BsuRI	GGCC	3 cut(s)	228, 700, 1219
BtgI	CCRYGG	2 cut(s)	120, 1179
BtsCI	GGATG	3 cut(s)	479, 895, 1132
BtsIMutI	CAGTG	2 cut(s)	66, 1253
Cac8I	GCNNGC	2 cut(s)	628, 1196
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	1215
Cfr13I	GGNCC	1 cut(s)	698
CsiI	ACCWGGT	1 cut(s)	1167
CspCI	CAANNNNNGTGG	2 cut(s)	1104, 1139
CviAII	CATG	7 cut(s)	121, 695, 723, 730, 779, 896, 1180
DdeI	CTNAG	3 cut(s)	298, 306, 360
DpnI	GATC	7 cut(s)	59, 527, 590, 676, 712, 1105, 1152
DpnII	GATC	7 cut(s)	57, 525, 588, 674, 710, 1103, 1150
DraI	TTTAAA	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	1217
EagI	CGGCCG	1 cut(s)	1217
Eam1104I	CTCTTC	2 cut(s)	121, 223
EarI	CTCTTC	2 cut(s)	121, 223
EclXI	CGGCCG	1 cut(s)	1217
Eco130I	CCWWGG	2 cut(s)	120, 1179
Eco24I	GRGCYC	1 cut(s)	623
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	406
Eco52I	CGGCCG	1 cut(s)	1217
Eco88I	CYCGRG	2 cut(s)	416, 640
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	1167
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	120, 1179
EcoT22I	ATGCAT	1 cut(s)	994
EcoT38I	GRGCYC	1 cut(s)	623
ErhI	CCWWGG	2 cut(s)	120, 1179
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	7 cut(s)	124, 698, 726, 733, 782, 899, 1183
FaqI	GGGAC	2 cut(s)	937, 1291
FatI	CATG	7 cut(s)	120, 694, 722, 729, 778, 895, 1179
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	3 cut(s)	513, 1176, 1199
FokI	GGATG	3 cut(s)	486, 902, 1139
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	3 cut(s)	513, 1176, 1199
FspBI	CTAG	3 cut(s)	759, 767, 1271
GluI	GCNGC	3 cut(s)	513, 1176, 1199
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	3 cut(s)	228, 700, 1219
HapII	CCGG	4 cut(s)	944, 1216, 1262, 1285
Hin1II	CATG	7 cut(s)	124, 698, 726, 733, 782, 899, 1183
HincII	GTYRAC	2 cut(s)	574, 1290
HindII	GTYRAC	2 cut(s)	574, 1290
HindIII	AAGCTT	1 cut(s)	1109
HinfI	GANTC	4 cut(s)	141, 302, 839, 1279
HpaI	GTTAAC	1 cut(s)	1290
HpaII	CCGG	4 cut(s)	944, 1216, 1262, 1285
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	6 cut(s)	112, 481, 574, 794, 1028, 1290
Hpy188I	TCNGA	8 cut(s)	195, 301, 307, 363, 458, 473, 564, 865
Hpy188III	TCNNGA	6 cut(s)	409, 418, 520, 529, 749, 836
Hpy8I	GTNNAC	6 cut(s)	112, 481, 574, 794, 1028, 1290
HpyAV	CCTTC	3 cut(s)	105, 711, 856
HpyCH4III	ACNGT	2 cut(s)	70, 690
HpyCH4IV	ACGT	4 cut(s)	390, 504, 534, 603
HpyCH4V	TGCA	4 cut(s)	394, 626, 992, 1198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 627, 1181
HpyF3I	CTNAG	3 cut(s)	298, 306, 360
HpySE526I	ACGT	4 cut(s)	390, 504, 534, 603
Hsp92II	CATG	7 cut(s)	124, 698, 726, 733, 782, 899, 1183
KspAI	GTTAAC	1 cut(s)	1290
Kzo9I	GATC	7 cut(s)	57, 525, 588, 674, 710, 1103, 1150
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	3 cut(s)	524, 1187, 1210
LweI	GCATC	3 cut(s)	166, 464, 1117
MabI	ACCWGGT	1 cut(s)	1167
MaeI	CTAG	3 cut(s)	759, 767, 1271
MaeII	ACGT	4 cut(s)	390, 504, 534, 603
MaeIII	GTNAC	4 cut(s)	386, 690, 1072, 1211
MalI	GATC	7 cut(s)	59, 527, 590, 676, 712, 1105, 1152
MboI	GATC	7 cut(s)	57, 525, 588, 674, 710, 1103, 1150
MflI	RGATCY	3 cut(s)	588, 1103, 1150
MhlI	GDGCHC	1 cut(s)	623
MluCI	AATT	5 cut(s)	45, 316, 395, 557, 1043
MlyI	GAGTC	1 cut(s)	1273
MnlI	CCTC	5 cut(s)	147, 425, 755, 962, 1268
Mph1103I	ATGCAT	1 cut(s)	994
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	7 cut(s)	332, 354, 438, 507, 912, 1046, 1289
MslI	CAYNNNNRTG	2 cut(s)	734, 1184
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	4 cut(s)	944, 1216, 1262, 1285
MspR9I	CCNGG	2 cut(s)	944, 1169
MvaI	CCWGG	1 cut(s)	1169
MwoI	GCNNNNNNNGC	3 cut(s)	83, 627, 1181
NciI	CCSGG	1 cut(s)	944
NcoI	CCATGG	2 cut(s)	120, 1179
NdeII	GATC	7 cut(s)	57, 525, 588, 674, 710, 1103, 1150
NlaIII	CATG	7 cut(s)	124, 698, 726, 733, 782, 899, 1183
NlaIV	GGNNCC	1 cut(s)	1260
NsiI	ATGCAT	1 cut(s)	994
NspI	RCATGY	1 cut(s)	733
NspV	TTCGAA	1 cut(s)	824
PaeR7I	CTCGAG	2 cut(s)	416, 640
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	141, 302, 839
PkrI	GCNGC	3 cut(s)	514, 1177, 1200
PleI	GAGTC	1 cut(s)	1273
PpsI	GAGTC	1 cut(s)	1273
Ppu21I	YACGTR	1 cut(s)	391
PsiI	TTATAA	2 cut(s)	233, 1136
Psp1406I	AACGTT	3 cut(s)	504, 534, 603
Psp6I	CCWGG	1 cut(s)	1167
PspGI	CCWGG	1 cut(s)	1167
PspN4I	GGNNCC	1 cut(s)	1260
PspPI	GGNCC	1 cut(s)	698
PspXI	VCTCGAGB	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	3 cut(s)	588, 1103, 1150
RseI	CAYNNNNRTG	2 cut(s)	734, 1184
SaqAI	TTAA	7 cut(s)	332, 354, 438, 507, 912, 1046, 1289
SatI	GCNGC	3 cut(s)	513, 1176, 1199
Sau3AI	GATC	7 cut(s)	57, 525, 588, 674, 710, 1103, 1150
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	1273
ScrFI	CCNGG	2 cut(s)	944, 1169
SduI	GDGCHC	1 cut(s)	623
SexAI	ACCWGGT	1 cut(s)	1167
SfaNI	GCATC	3 cut(s)	166, 464, 1117
Sfr274I	CTCGAG	2 cut(s)	416, 640
SfuI	TTCGAA	1 cut(s)	824
SlaI	CTCGAG	2 cut(s)	416, 640
SmiMI	CAYNNNNRTG	2 cut(s)	734, 1184
SmlI	CTYRAG	2 cut(s)	416, 640
SmoI	CTYRAG	2 cut(s)	416, 640
Sse9I	AATT	5 cut(s)	45, 316, 395, 557, 1043
SsiI	CCGC	3 cut(s)	432, 465, 515
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	3 cut(s)	759, 767, 1271
StyD4I	CCNGG	2 cut(s)	942, 1167
StyI	CCWWGG	2 cut(s)	120, 1179
TaaI	ACNGT	2 cut(s)	70, 690
TaiI	ACGT	4 cut(s)	393, 507, 537, 606
TaqI	TCGA	8 cut(s)	139, 350, 402, 417, 528, 599, 641, 824
TaqII	GACCGA	1 cut(s)	860
TasI	AATT	5 cut(s)	45, 316, 395, 557, 1043
TfiI	GAWTC	3 cut(s)	141, 302, 839
Tru1I	TTAA	7 cut(s)	332, 354, 438, 507, 912, 1046, 1289
Tru9I	TTAA	7 cut(s)	332, 354, 438, 507, 912, 1046, 1289
TscAI	CASTG	2 cut(s)	73, 1260
TseI	GCWGC	3 cut(s)	512, 1175, 1198
TspDTI	ATGAA	8 cut(s)	20, 52, 309, 582, 637, 699, 752, 906
TspGWI	ACGGA	2 cut(s)	975, 986
TspRI	CASTG	2 cut(s)	73, 1260
XapI	RAATTY	2 cut(s)	316, 557
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XhoI	CTCGAG	2 cut(s)	416, 640
XmiI	GTMKAC	1 cut(s)	1027
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	3 cut(s)	759, 767, 1271
Zsp2I	ATGCAT	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.