Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003140

Physical Location & Seq

Genomic Coordinates Reverse (-)

15473898 .. 15476990

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGAAAGATTCTTCATCTTCTTCTTCTTCTTCTTAAGGTCTCTGTTCTTGAATTCATCATTAGTGTTTCTGCTTTTACTTCACCTGCTTCACAGCCTTCTCTTTCTCCTGTTTACACTTCCATGGCTTCCTTTTCTCCAGGGATCCACATGGGCAAAGGCCAAGAACACAAGTTAGATGCACACAAGAAACTTCTAATCGCTCTCATAATCACCTCATCTTCTCTAGGACTAATACTTGTATCTTGTTTATGCTTTTGGGTTTATTGGTCTAAGAAATCTCCCAAAAACACCAAGAACTCAGGTGAGAGTAGGATTTCATTATCCAAGAAGGGCTTTGTGCAGTCCTTCGATTACAAGACACTAGAGAAAGCAACAGGCGGTTTCAAAGACGGTAATCTTATAGGACGAGGCGGGTTCGGAGATGTTTACAAGGCCTGTTTAGGCAACAACACTCTAGCAGCAGTCAAAAAGATCGAAAACGTTAGTCAAGAAGCAAAACGAGAATTTCAGAATGAAGTTGATTTGTTGAGCAAGATTCACCACCCGAACATCATCTCATTGTTTGGATATGGAAATGAACTCAGTTCGAGTTTTATCGTCTACGAGCTGATGGAAAGCGGATCATTGGATACACAGTTACACGGACCTTCTCGGGGATCGGCTTTAACATGGCACATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCTGTTGAGTATCTCCACGAGCGTTGTCGTCCTCCGGTTATCCACAGAGATCTTAAATCGTCAAATATTCTCCTTGATTCTTCCTTCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAATGGTGGGGGCTCACGGCAAAAACAACATTAAACTATCAGGAACACTTGGTTATGTTGCTCCAGAATATCTCCTAGATGGAAAATTGACGGATAAGAGTGATGTTTATGCGTTTGGTGTGGTTTTACTTGAACTCTTGTTAGGAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGTCAATCTCTTGTCACTTGGGCAATGCCCCAACTTACGGATAGATCAAAGCTTCCGAAAATCGTGGATCCGGTTATCAAAGATACAATGGATCATAAGCACTTATACCAGGTGGCAGCCGTGGCAGTGCTTTGTGTACAACCAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCACTAGTTCCATTGGTTCCGGTAGAGCTAGGAGGGACTCTCCGGTTAATACCATCATCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

418

Amino Acids

45.84

Weight (kDa)

9.15

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	131 - 346	4.6e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	134 - 369	4.8e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT4G32000 AT4G32000 AT4G32000 AT4G32000 AT5G11020 AT5G11020 AT5G11020 AT5G11020
fragaria_vesca	FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240
malus_domestica	MD08G1154200.v1.1 MD15G1131500.v1.1
prunus_persica	Prupe.1G486900_v2.0.a1 Prupe.1G486900_v2.0.a1
pyrus_communis	pycom08g13380 pycom15g11870
rosa_chinensis	RchiOBHm_Chr6g0297161
rosa_laevigata	RLG00000011626
rosa_multiflora	Rmu_sc0005385.1_g000026
rosa_roxburghii	Rroxscaffold_7G00170830
rosa_rugosa	Rorug06G0269300 Rorug06G0269400
rosa_samantha	Rh6AG380500
rosa_wichuraiana	Rw6G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	5 cut(s)	381, 414, 621, 682, 827
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	7 cut(s)	139, 152, 631, 667, 1070, 1083, 1107
AcoI	YGGCCR	1 cut(s)	980
AcsI	RAATTY	2 cut(s)	53, 506
AfaI	GTAC	1 cut(s)	1146
AfiI	CCNNNNNNNGG	2 cut(s)	656, 1045
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	53, 388, 799, 962
AhlI	ACTAGT	1 cut(s)	1195
AjnI	CCWGG	2 cut(s)	139, 1116
AluBI	AGCT	4 cut(s)	610, 713, 1060, 1219
AluI	AGCT	4 cut(s)	610, 713, 1060, 1219
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	7 cut(s)	139, 152, 631, 667, 1070, 1083, 1107
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	3 cut(s)	160, 435, 980
ApeKI	GCWGC	2 cut(s)	461, 1124
ApoI	RAATTY	2 cut(s)	53, 506
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	4 cut(s)	75, 205, 317, 533
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	647
BamHI	GGATCC	2 cut(s)	144, 1075
BanII	GRGCYC	1 cut(s)	844
BauI	CACGAG	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	982
BbvI	GCAGC	2 cut(s)	473, 1136
BccI	CCATC	3 cut(s)	607, 902, 1252
BceAI	ACGGC	3 cut(s)	862, 995, 1112
BciT130I	CCWGG	2 cut(s)	141, 1118
BciVI	GTATCC	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	1195
BfaI	CTAG	6 cut(s)	227, 365, 458, 905, 1196, 1220
BfrI	CTTAAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	625
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	2 cut(s)	462, 1125
BlsI	GCNGC	2 cut(s)	463, 1126
Bme1390I	CCNGG	2 cut(s)	141, 1118
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	3 cut(s)	146, 1077, 1209
BmrFI	CCNGG	2 cut(s)	141, 1118
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	982
BplI	GAGNNNNNCTC	2 cut(s)	1215, 1247
BpmI	CTGGAG	2 cut(s)	123, 876
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	123, 140, 1128
BsaWI	WCCGGW	4 cut(s)	745, 1078, 1210, 1233
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 1045
Bse118I	RCCGGY	1 cut(s)	982
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	2 cut(s)	141, 1118
BseDI	CCNNGG	3 cut(s)	123, 140, 1128
BseGI	GGATG	1 cut(s)	690
BseLI	CCNNNNNNNGG	2 cut(s)	656, 1045
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	2 cut(s)	315, 598
BseX3I	CGGCCG	1 cut(s)	980
BseXI	GCAGC	2 cut(s)	473, 1136
BsgI	GTGCAG	1 cut(s)	362
Bsh1285I	CGRYCG	2 cut(s)	983, 1169
BshFI	GGCC	3 cut(s)	162, 437, 982
BsiEI	CGRYCG	2 cut(s)	983, 1169
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	5 cut(s)	746, 983, 1079, 1211, 1234
BslFI	GGGAC	1 cut(s)	1240
BslI	CCNNNNNNNGG	2 cut(s)	656, 1045
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	1240
BsnI	GGCC	3 cut(s)	162, 437, 982
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	844
Bsp1407I	TGTACA	1 cut(s)	1144
Bsp143I	GATC	8 cut(s)	144, 474, 623, 659, 760, 1052, 1075, 1099
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	5 cut(s)	381, 414, 621, 682, 827
BspANI	GGCC	3 cut(s)	162, 437, 982
BspCNI	CTCAG	2 cut(s)	314, 597
BspLI	GGNNCC	3 cut(s)	146, 1077, 1209
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	7 cut(s)	139, 152, 631, 667, 1070, 1083, 1107
BspTI	CTTAAG	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	1 cut(s)	982
BsrGI	TGTACA	1 cut(s)	1144
BssAI	RCCGGY	1 cut(s)	982
BssECI	CCNNGG	3 cut(s)	123, 140, 1128
BssMI	GATC	8 cut(s)	144, 474, 623, 659, 760, 1052, 1075, 1099
BssSI	CACGAG	1 cut(s)	728
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	728
Bst2UI	CCWGG	2 cut(s)	141, 1118
Bst4CI	ACNGT	3 cut(s)	395, 639, 1170
BstAFI	CTTAAG	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	1144
BstDEI	CTNAG	3 cut(s)	273, 301, 584
BstDSI	CCRYGG	2 cut(s)	123, 1128
BstF5I	GGATG	1 cut(s)	690
BstKTI	GATC	8 cut(s)	147, 477, 626, 662, 763, 1055, 1078, 1102
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	8 cut(s)	144, 474, 623, 659, 760, 1052, 1075, 1099
BstMCI	CGRYCG	2 cut(s)	983, 1169
BstMWI	GCNNNNNNNGC	1 cut(s)	1130
BstNI	CCWGG	2 cut(s)	141, 1118
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	2 cut(s)	139, 1116
BstV1I	GCAGC	2 cut(s)	473, 1136
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	3 cut(s)	144, 760, 1075
BstYI	RGATCY	3 cut(s)	144, 760, 1075
BstZI	CGGCCG	1 cut(s)	980
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	162, 437, 982
BtgI	CCRYGG	2 cut(s)	123, 1128
BtsCI	GGATG	1 cut(s)	690
BtsI	GCAGTG	1 cut(s)	1140
BtsIMutI	CAGTG	2 cut(s)	1013, 1140
BveI	ACCTGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	982
Cfr13I	GGNCC	1 cut(s)	647
CsiI	ACCWGGT	1 cut(s)	1116
Csp6I	GTAC	1 cut(s)	1145
CspCI	CAANNNNNGTGG	2 cut(s)	716, 751
CviAII	CATG	4 cut(s)	124, 151, 672, 679
CviQI	GTAC	1 cut(s)	1145
DdeI	CTNAG	3 cut(s)	273, 301, 584
DpnI	GATC	8 cut(s)	146, 476, 625, 661, 762, 1054, 1077, 1101
DpnII	GATC	8 cut(s)	144, 474, 623, 659, 760, 1052, 1075, 1099
EaeI	YGGCCR	1 cut(s)	980
EagI	CGGCCG	1 cut(s)	980
EclXI	CGGCCG	1 cut(s)	980
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	844
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	647
Eco52I	CGGCCG	1 cut(s)	980
Eco88I	CYCGRG	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	139, 1116
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	4 cut(s)	127, 154, 675, 682
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	1 cut(s)	1240
FatI	CATG	4 cut(s)	123, 150, 671, 678
FauI	CCCGC	1 cut(s)	407
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	2 cut(s)	462, 1125
FokI	GGATG	1 cut(s)	697
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	2 cut(s)	462, 1125
FspBI	CTAG	6 cut(s)	227, 365, 458, 905, 1196, 1220
GluI	GCNGC	2 cut(s)	462, 1125
GsuI	CTGGAG	2 cut(s)	123, 876
HaeIII	GGCC	3 cut(s)	162, 437, 982
HapII	CCGG	5 cut(s)	746, 983, 1079, 1211, 1234
Hin1II	CATG	4 cut(s)	127, 154, 675, 682
HindIII	AAGCTT	1 cut(s)	1058
HinfI	GANTC	4 cut(s)	10, 538, 788, 1228
HpaII	CCGG	5 cut(s)	746, 983, 1079, 1211, 1234
HphI	GGTGA	4 cut(s)	75, 205, 317, 533
Hpy166II	GTNNAC	4 cut(s)	115, 430, 604, 1145
Hpy188I	TCNGA	4 cut(s)	422, 513, 814, 1065
Hpy188III	TCNNGA	6 cut(s)	50, 491, 698, 870, 893, 1254
Hpy8I	GTNNAC	4 cut(s)	115, 430, 604, 1145
HpyAV	CCTTC	5 cut(s)	108, 325, 358, 660, 805
HpyCH4III	ACNGT	3 cut(s)	395, 639, 1170
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	2 cut(s)	182, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1130
HpyF3I	CTNAG	3 cut(s)	273, 301, 584
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	127, 154, 675, 682
Kzo9I	GATC	8 cut(s)	144, 474, 623, 659, 760, 1052, 1075, 1099
LmnI	GCTCC	1 cut(s)	895
Lsp1109I	GCAGC	2 cut(s)	473, 1136
LweI	GCATC	1 cut(s)	169
MabI	ACCWGGT	1 cut(s)	1116
MaeI	CTAG	6 cut(s)	227, 365, 458, 905, 1196, 1220
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	639, 1021
MalI	GATC	8 cut(s)	146, 476, 625, 661, 762, 1054, 1077, 1101
MboI	GATC	8 cut(s)	144, 474, 623, 659, 760, 1052, 1075, 1099
MflI	RGATCY	3 cut(s)	144, 760, 1075
MhlI	GDGCHC	1 cut(s)	844
MluCI	AATT	4 cut(s)	53, 506, 914, 992
MlyI	GAGTC	1 cut(s)	1222
MnlI	CCTC	4 cut(s)	226, 404, 753, 1217
MseI	TTAA	5 cut(s)	36, 668, 765, 861, 1238
MslI	CAYNNNNRTG	2 cut(s)	122, 683
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	5 cut(s)	746, 983, 1079, 1211, 1234
MspR9I	CCNGG	2 cut(s)	141, 1118
MvaI	CCWGG	2 cut(s)	141, 1118
MwoI	GCNNNNNNNGC	1 cut(s)	1130
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	8 cut(s)	144, 474, 623, 659, 760, 1052, 1075, 1099
NlaIII	CATG	4 cut(s)	127, 154, 675, 682
NlaIV	GGNNCC	3 cut(s)	146, 1077, 1209
NmuCI	GTSAC	1 cut(s)	1021
NspI	RCATGY	1 cut(s)	682
PaqCI	CACCTGC	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	10, 538, 788
PkrI	GCNGC	2 cut(s)	463, 1126
PleI	GAGTC	1 cut(s)	1222
PpsI	GAGTC	1 cut(s)	1222
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	139, 1116
PspGI	CCWGG	2 cut(s)	139, 1116
PspN4I	GGNNCC	3 cut(s)	146, 1077, 1209
PspPI	GGNCC	1 cut(s)	647
PsuI	RGATCY	3 cut(s)	144, 760, 1075
RsaI	GTAC	1 cut(s)	1146
RsaNI	GTAC	1 cut(s)	1145
RseI	CAYNNNNRTG	2 cut(s)	122, 683
SaqAI	TTAA	5 cut(s)	36, 668, 765, 861, 1238
SatI	GCNGC	2 cut(s)	462, 1125
Sau3AI	GATC	8 cut(s)	144, 474, 623, 659, 760, 1052, 1075, 1099
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	1 cut(s)	1222
ScrFI	CCNGG	2 cut(s)	141, 1118
SduI	GDGCHC	1 cut(s)	844
SexAI	ACCWGGT	1 cut(s)	1116
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	2 cut(s)	122, 683
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	1195
Sse9I	AATT	4 cut(s)	53, 506, 914, 992
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	5 cut(s)	381, 414, 621, 682, 827
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	6 cut(s)	227, 365, 458, 905, 1196, 1220
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	139, 1116
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	395, 639, 1170
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	4 cut(s)	351, 477, 590, 1165
TasI	AATT	4 cut(s)	53, 506, 914, 992
TatI	WGTACW	1 cut(s)	1144
TfiI	GAWTC	3 cut(s)	10, 538, 788
Tru1I	TTAA	5 cut(s)	36, 668, 765, 861, 1238
Tru9I	TTAA	5 cut(s)	36, 668, 765, 861, 1238
TscAI	CASTG	2 cut(s)	1013, 1140
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	2 cut(s)	461, 1124
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	6 cut(s)	5, 46, 309, 531, 594, 701
TspGWI	ACGGA	3 cut(s)	660, 935, 1061
TspRI	CASTG	2 cut(s)	1013, 1140
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	2 cut(s)	53, 506
XceI	RCATGY	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	6 cut(s)	227, 365, 458, 905, 1196, 1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.