Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003140

Physical Location & Seq

Genomic Coordinates Reverse (-)

57973928 .. 57977880

Gene Structure 3953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG380500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGATCCGCATAAGAAACCACTCATTGCCCTCATTGTGACTTGTGCAACACTTGGTGCAGTTTTGTTGTCACTATTGTGTTTGTGGTTTTATCACAGGAAGTACAAGTTCCTTAAGAGAAATGCTCAGAGCTCAGATGCCGAGAAGGAGCTGGCATTGTCTCCATTTTTCGGTAAATTCAATTCCATAAAGATGGTTGGAAACAAAGGGTCTGTGACAGTAATTGAGTATAAGCTAATTGAAAAGGGCACTAGCAATTTTCGGGAGAGTAATATCTTGGGCGAGGGTGGATTTGGATGCGTTTACCGGGCTCGTTTGGATGATAGTTTGATTGTTGCTGTCAAGAAACTGGACTGTGCAACTGAGGATGCTGAAAAAGAATTTGAGAATGAGGTGGAGTTATTACATAAAATTCAGCATCCGAATATAATTTCTTTTTTGGGCTGTAGTATTGATGGTGACTCCAGGTTCATTGTTTACGAATTGATGCATAATGGTTCTGTGGAAACTCAATTGCATGGACCCTCTCATGGATCGGCATTAACATGGCCTATGCGAATGAAAATCGCTCTGGATGCTGCAAGAGGATTAGAGTATTTGCATGAGTACTGCAACCCTCCAGTGATCCATAGAGATCTGAAAACATCTAATATTCTTTTGGATGCCAACTTCAATGCCAAGCTCTCTGATTTTGGTCTTGCTGTGGCTGATGGGGCCAAAAACAATAATAACATCAAGCTTTCTGGCACCTTGGGTTATGTTGCTCCCGAGTATCTTTTGGATGGTAAGTTGACGGACAAGAGTGATGTCTATGCTTTTGGAGTTGTACTTTTGGAGCTTCTACTAGGAAGAAGGCCTGTAGAAAAACTGGCACCAACTCAATGCCAATCCTTAGTCACATGGGCCATGCCTCAGCTTACTGACCGATCAAAGCTTCCCCACATTGTGGATCCCATGATCAAAGATACAATGGATCTAAAGCACTTGTACCAGGTTGCTGCTGTAGCTGTGTTATGTGTGCAACCCGAACCAAGTTACCGCCCACTAATAACAGATGTTTTGCATTCCCTTGTCCCTCTTGTTCCTGTCGAGCTCGGAGGGACACTTAGAGTTACACAAGCTGCACCTCCAGGAAACCCCCAAGAGTCTTCTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

386

Amino Acids

42.69

Weight (kDa)

6.36

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	88 - 306	5e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	91 - 322	1.9e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT4G32000 AT4G32000 AT4G32000 AT4G32000 AT5G11020 AT5G11020 AT5G11020 AT5G11020
fragaria_vesca	FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240
malus_domestica	MD08G1154200.v1.1 MD15G1131500.v1.1
prunus_persica	Prupe.1G486900_v2.0.a1 Prupe.1G486900_v2.0.a1
pyrus_communis	pycom08g13380 pycom15g11870
rosa_chinensis	RchiOBHm_Chr6g0297161
rosa_laevigata	RLG00000011626
rosa_multiflora	Rmu_sc0005385.1_g000026
rosa_roxburghii	Rroxscaffold_7G00170830
rosa_rugosa	Rorug06G0269300 Rorug06G0269400
rosa_samantha	Rh6AG380500
rosa_wichuraiana	Rw6G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	746, 871
AccB7I	CCANNNNNTGG	1 cut(s)	946
AciI	CCGC	2 cut(s)	8, 1039
AclWI	GGATC	6 cut(s)	12, 541, 619, 944, 957, 981
AcsI	RAATTY	3 cut(s)	176, 380, 411
AdeI	CACNNNGTG	2 cut(s)	56, 946
AfaI	GTAC	4 cut(s)	104, 608, 828, 989
AfiI	CCNNNNNNNGG	3 cut(s)	170, 530, 946
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	181, 242, 673
AjnI	CCWGG	3 cut(s)	464, 990, 1129
AleI	CACNNNNGTG	1 cut(s)	76
Alw21I	GWGCWC	2 cut(s)	134, 1095
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	6 cut(s)	12, 541, 619, 944, 957, 981
Ama87I	CYCGRG	1 cut(s)	767
AoxI	GGCC	4 cut(s)	548, 714, 854, 903
ApeKI	GCWGC	3 cut(s)	578, 998, 1121
ApoI	RAATTY	3 cut(s)	176, 380, 411
AspS9I	GGNCC	3 cut(s)	521, 714, 903
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	767
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	251
BamHI	GGATCC	2 cut(s)	4, 949
BanI	GGYRCC	2 cut(s)	746, 871
BanII	GRGCYC	3 cut(s)	134, 313, 1095
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	2 cut(s)	134, 1095
BbvCI	CCTCAGC	1 cut(s)	912
BbvI	GCAGC	3 cut(s)	565, 985, 1108
BccI	CCATC	4 cut(s)	187, 449, 704, 776
BciT130I	CCWGG	3 cut(s)	466, 992, 1131
BclI	TGATCA	2 cut(s)	957, 1153
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	252, 845
BfmI	CTRYAG	3 cut(s)	445, 858, 1002
BfrI	CTTAAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	3 cut(s)	579, 999, 1122
BlsI	GCNGC	3 cut(s)	580, 1000, 1123
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	4 cut(s)	308, 466, 992, 1131
Bme18I	GGWCC	1 cut(s)	521
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	3 cut(s)	521, 714, 903
BmiI	GGNNCC	6 cut(s)	6, 523, 715, 748, 873, 951
BmrFI	CCNGG	4 cut(s)	308, 466, 992, 1131
BmsI	GCATC	7 cut(s)	127, 287, 358, 427, 477, 565, 652
BpiI	GAAGAC	1 cut(s)	1140
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	3 cut(s)	448, 603, 1113
Bpu10I	CCTNAGC	1 cut(s)	912
BpuMI	CCSGG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	750
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 530, 946
Bse1I	ACTGG	3 cut(s)	354, 620, 873
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	3 cut(s)	466, 992, 1131
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	7 cut(s)	302, 325, 373, 418, 580, 667, 787
BseLI	CCNNNNNNNGG	3 cut(s)	170, 530, 946
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	4 cut(s)	140, 147, 354, 926
BseNI	ACTGG	3 cut(s)	354, 620, 873
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	565, 985, 1108
BsgI	GTGCAG	2 cut(s)	78, 1107
BshFI	GGCC	4 cut(s)	550, 716, 856, 905
BshNI	GGYRCC	2 cut(s)	746, 871
BsiHKAI	GWGCWC	2 cut(s)	134, 1095
BsiHKCI	CYCGRG	1 cut(s)	767
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	1058, 1114
BslI	CCNNNNNNNGG	3 cut(s)	170, 530, 946
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	1058, 1114
BsmI	GAATGC	1 cut(s)	1063
BsnI	GGCC	4 cut(s)	550, 716, 856, 905
BsoBI	CYCGRG	1 cut(s)	767
Bsp1286I	GDGCHC	4 cut(s)	134, 251, 313, 1095
Bsp143I	GATC	9 cut(s)	4, 533, 624, 634, 926, 949, 957, 973, 1153
BspACI	CCGC	2 cut(s)	8, 1039
BspANI	GGCC	4 cut(s)	550, 716, 856, 905
BspCNI	CTCAG	4 cut(s)	139, 146, 355, 925
BspLI	GGNNCC	6 cut(s)	6, 523, 715, 748, 873, 951
BspPI	GGATC	6 cut(s)	12, 541, 619, 944, 957, 981
BspT107I	GGYRCC	2 cut(s)	746, 871
BspTI	CTTAAG	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	3 cut(s)	354, 620, 873
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	9 cut(s)	4, 533, 624, 634, 926, 949, 957, 973, 1153
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	3 cut(s)	466, 992, 1131
Bst4CI	ACNGT	2 cut(s)	220, 356
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	6 cut(s)	126, 133, 363, 892, 912, 1106
BstF5I	GGATG	7 cut(s)	302, 325, 373, 418, 580, 667, 787
BstKTI	GATC	9 cut(s)	7, 536, 627, 637, 929, 952, 960, 976, 1156
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	9 cut(s)	4, 533, 624, 634, 926, 949, 957, 973, 1153
BstMWI	GCNNNNNNNGC	3 cut(s)	575, 713, 1004
BstNI	CCWGG	3 cut(s)	466, 992, 1131
BstSCI	CCNGG	4 cut(s)	306, 464, 990, 1129
BstSFI	CTRYAG	3 cut(s)	445, 858, 1002
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	565, 985, 1108
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	4 cut(s)	4, 634, 949, 973
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	4 cut(s)	4, 634, 949, 973
BsuRI	GGCC	4 cut(s)	550, 716, 856, 905
BtsCI	GGATG	7 cut(s)	302, 325, 373, 418, 580, 667, 787
BtsIMutI	CAGTG	2 cut(s)	627, 1156
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	3 cut(s)	521, 714, 903
CsiI	ACCWGGT	1 cut(s)	990
Csp6I	GTAC	4 cut(s)	103, 607, 827, 988
CviAII	CATG	7 cut(s)	518, 530, 546, 602, 900, 907, 955
CviQI	GTAC	4 cut(s)	103, 607, 827, 988
DdeI	CTNAG	6 cut(s)	126, 133, 363, 892, 912, 1106
DpnI	GATC	9 cut(s)	6, 535, 626, 636, 928, 951, 959, 975, 1155
DpnII	GATC	9 cut(s)	4, 533, 624, 634, 926, 949, 957, 973, 1153
DraIII	CACNNNGTG	2 cut(s)	56, 946
Ecl136II	GAGCTC	2 cut(s)	132, 1093
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	856
Eco24I	GRGCYC	3 cut(s)	134, 313, 1095
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	2 cut(s)	132, 1093
Eco88I	CYCGRG	1 cut(s)	767
EcoICRI	GAGCTC	2 cut(s)	132, 1093
EcoRII	CCWGG	3 cut(s)	464, 990, 1129
EcoT14I	CCWWGG	1 cut(s)	750
EcoT22I	ATGCAT	1 cut(s)	492
EcoT38I	GRGCYC	3 cut(s)	134, 313, 1095
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	7 cut(s)	521, 533, 549, 605, 903, 910, 958
FaqI	GGGAC	2 cut(s)	1058, 1114
FatI	CATG	7 cut(s)	517, 529, 545, 601, 899, 906, 954
FbaI	TGATCA	2 cut(s)	957, 1153
Fnu4HI	GCNGC	3 cut(s)	579, 999, 1122
FokI	GGATG	7 cut(s)	309, 332, 380, 405, 587, 674, 794
FriOI	GRGCYC	3 cut(s)	134, 313, 1095
Fsp4HI	GCNGC	3 cut(s)	579, 999, 1122
FspBI	CTAG	2 cut(s)	252, 845
GluI	GCNGC	3 cut(s)	579, 999, 1122
GsuI	CTGGAG	3 cut(s)	448, 603, 1113
HaeIII	GGCC	4 cut(s)	550, 716, 856, 905
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	7 cut(s)	521, 533, 549, 605, 903, 910, 958
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HindIII	AAGCTT	2 cut(s)	737, 932
HinfI	GANTC	2 cut(s)	461, 1145
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	3 cut(s)	304, 478, 792
Hpy188I	TCNGA	7 cut(s)	129, 136, 423, 639, 688, 1097, 1153
Hpy188III	TCNNGA	4 cut(s)	263, 343, 572, 767
Hpy8I	GTNNAC	3 cut(s)	304, 478, 792
HpyAV	CCTTC	2 cut(s)	139, 846
HpyCH4III	ACNGT	2 cut(s)	220, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	575, 713, 1004
HpyF3I	CTNAG	6 cut(s)	126, 133, 363, 892, 912, 1106
Hsp92II	CATG	7 cut(s)	521, 533, 549, 605, 903, 910, 958
Ksp22I	TGATCA	2 cut(s)	957, 1153
Kzo9I	GATC	9 cut(s)	4, 533, 624, 634, 926, 949, 957, 973, 1153
LmnI	GCTCC	3 cut(s)	148, 769, 835
Lsp1109I	GCAGC	3 cut(s)	565, 985, 1108
LweI	GCATC	7 cut(s)	127, 287, 358, 427, 477, 565, 652
MabI	ACCWGGT	1 cut(s)	990
MaeI	CTAG	2 cut(s)	252, 845
MaeIII	GTNAC	7 cut(s)	37, 69, 214, 458, 895, 1034, 1111
MalI	GATC	9 cut(s)	6, 535, 626, 636, 928, 951, 959, 975, 1155
MboI	GATC	9 cut(s)	4, 533, 624, 634, 926, 949, 957, 973, 1153
MboII	GAAGA	2 cut(s)	861, 1140
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	4 cut(s)	4, 634, 949, 973
MhlI	GDGCHC	4 cut(s)	134, 251, 313, 1095
MlyI	GAGTC	2 cut(s)	455, 1154
MmeI	TCCRAC	1 cut(s)	178
Mph1103I	ATGCAT	1 cut(s)	492
MseI	TTAA	2 cut(s)	114, 542
MslI	CAYNNNNRTG	3 cut(s)	76, 191, 544
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	4 cut(s)	308, 466, 992, 1131
MunI	CAATTG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	1063
MvaI	CCWGG	3 cut(s)	466, 992, 1131
MwoI	GCNNNNNNNGC	3 cut(s)	575, 713, 1004
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	9 cut(s)	4, 533, 624, 634, 926, 949, 957, 973, 1153
NlaIII	CATG	7 cut(s)	521, 533, 549, 605, 903, 910, 958
NlaIV	GGNNCC	6 cut(s)	6, 523, 715, 748, 873, 951
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	5 cut(s)	37, 69, 214, 458, 895
NsiI	ATGCAT	1 cut(s)	492
OliI	CACNNNNGTG	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	856
PctI	GAATGC	1 cut(s)	1063
PflMI	CCANNNNNTGG	1 cut(s)	946
PfoI	TCCNGGA	1 cut(s)	1129
PkrI	GCNGC	3 cut(s)	580, 1000, 1123
PleI	GAGTC	2 cut(s)	455, 1153
PpsI	GAGTC	2 cut(s)	455, 1153
Psp124BI	GAGCTC	2 cut(s)	134, 1095
Psp6I	CCWGG	3 cut(s)	464, 990, 1129
PspGI	CCWGG	3 cut(s)	464, 990, 1129
PspN4I	GGNNCC	6 cut(s)	6, 523, 715, 748, 873, 951
PspPI	GGNCC	3 cut(s)	521, 714, 903
PsuI	RGATCY	4 cut(s)	4, 634, 949, 973
RsaI	GTAC	4 cut(s)	104, 608, 828, 989
RsaNI	GTAC	4 cut(s)	103, 607, 827, 988
RseI	CAYNNNNRTG	3 cut(s)	76, 191, 544
SacI	GAGCTC	2 cut(s)	134, 1095
SaqAI	TTAA	2 cut(s)	114, 542
SatI	GCNGC	3 cut(s)	579, 999, 1122
Sau3AI	GATC	9 cut(s)	4, 533, 624, 634, 926, 949, 957, 973, 1153
Sau96I	GGNCC	3 cut(s)	521, 714, 903
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	2 cut(s)	455, 1154
ScrFI	CCNGG	4 cut(s)	308, 466, 992, 1131
SduI	GDGCHC	4 cut(s)	134, 251, 313, 1095
SexAI	ACCWGGT	1 cut(s)	990
SfaNI	GCATC	7 cut(s)	127, 287, 358, 427, 477, 565, 652
SfcI	CTRYAG	3 cut(s)	445, 858, 1002
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	3 cut(s)	76, 191, 544
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SseBI	AGGCCT	1 cut(s)	856
SsiI	CCGC	2 cut(s)	8, 1039
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	2 cut(s)	252, 845
SstI	GAGCTC	2 cut(s)	134, 1095
StuI	AGGCCT	1 cut(s)	856
StyD4I	CCNGG	4 cut(s)	306, 464, 990, 1129
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	220, 356
TaqI	TCGA	1 cut(s)	1089
TaqII	GACCGA	1 cut(s)	939
TatI	WGTACW	3 cut(s)	102, 606, 826
Tru1I	TTAA	2 cut(s)	114, 542
Tru9I	TTAA	2 cut(s)	114, 542
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	5 cut(s)	37, 69, 214, 458, 895
TseI	GCWGC	3 cut(s)	578, 998, 1121
Tsp45I	GTSAC	5 cut(s)	37, 69, 214, 458, 895
TspDTI	ATGAA	2 cut(s)	460, 575
TspGWI	ACGGA	1 cut(s)	809
TspRI	CASTG	1 cut(s)	627
Van91I	CCANNNNNTGG	1 cut(s)	946
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	3 cut(s)	176, 380, 411
XspI	CTAG	2 cut(s)	252, 845
ZrmI	AGTACT	1 cut(s)	608
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.