Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003140

Physical Location & Seq

Genomic Coordinates Forward (+)

12174480 .. 12177518

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13380.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAAGCTTCTTCTTCTTCTTCTTCAAGTTTTGCTTTTGCTGCTTGTACAGCCAACTCCCATTTGTGTTGGCGCCACACCGACTGACCCTTTTCTTTCCTCCATATCTGCTCCTCCCTCCTCGCACATTTCTCCAATTGCTTCATCAATGGCTACTTTCACTCCAGGAATTGAAGAAGGAAGTGAAAGGCATCAAATTGGTTCACATAAGACAATGCTAATTGCACTCATTGTTACCTGCACTGCACTTGGTGTAGTTCTTTTATCACTGTTGTGCTTGTGGATTTACCACAAAAAATTTCCACACAAATCCCCCAAGAAAAGTTATCAGAGCAACTCAGATGGCGAGAAGGGGCTTGCATTGGGTCCATTTGTGGGGAAATTCAATTCCACAAGGATGGTTTCTAAGAAAGGATCTGTTCCAGTAATTGAATATAAGGGACTGGAAAAAGGCACCAACGATTTTCGTGAAAGTAATATTATTGGTGAGGGTGGATTCGGATGTGTTTATAAAGCTCGGTTGGATAATAATTTGCTTGTTGCAGTCAAGAAACTAGACTGTGCAAGTCAGGATGCTGAGAGAGAATATGAGAATGAGGTGGAGTTGTTGCATAAAATTCAGCATCCAAATATAATTACCTTTTTGGGTTGTAGTATTAATGGTGACTCAAGGTTCATTGTTTACGAACTGATGCATAACGGATCTGTGGAAAGTCAATTGCATGGACACTCTCATGGTTCTGTATTAACATGGCCTATGCGAATGAAAATCGCTCTGGATGCAGCAAGAGGGCTAGAATATCTACACGAGTACTGCAACCCTCCAGTGATCCATAGAGATCTGAAAACATCTAATATTCTTTTAGATGCCAACTTCAATGCCAAGCTTTCAGATTTTGGTCTTGCCGTGGCTGACAGGGCAAAAAACAGTAAGAATGTCAAGCTCTCTGGGACCTTGGGTTATGTTGCTCCAGAGTATCTTTTAGATGGTAAATTGACGGATAAGAGTGATGTCTATGCTTTTGGAGTTGTGCTTCTGGAGCTTCTACTGGGAAGAAGGCCTGTTAAAAAACTGGCACCAACTCAGTGCCAATCTATAGTCACATGGGCTATGCCTCAGCTCACTGACAGATCAAAGCTTCCAAACATTGTGGATCCTGTTATCAAAGATTCCATGGATTTGAAGCACTTATACCAGGTTGCTGCTGTTGCTGTGTTATGTGTGCAACCGGAACCAAGTTACCGCCCTCTGATAACAGATGTTTTACATTCTCTTGTCCCTCTTGTTCCGGTGGAGCTTGGAGGGACACTAAGAGTTACCCAACCTGGACCTCCAGGAAGCGCCCCAGTTTCTCCTGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

455

Amino Acids

49.53

Weight (kDa)

8.44

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT4G32000 AT4G32000 AT4G32000 AT4G32000 AT5G11020 AT5G11020 AT5G11020 AT5G11020
fragaria_vesca	FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240
malus_domestica	MD08G1154200.v1.1 MD15G1131500.v1.1
prunus_persica	Prupe.1G486900_v2.0.a1 Prupe.1G486900_v2.0.a1
pyrus_communis	pycom08g13380 pycom15g11870
rosa_chinensis	RchiOBHm_Chr6g0297161
rosa_laevigata	RLG00000011626
rosa_multiflora	Rmu_sc0005385.1_g000026
rosa_roxburghii	Rroxscaffold_7G00170830
rosa_rugosa	Rorug06G0269300 Rorug06G0269400
rosa_samantha	Rh6AG380500
rosa_wichuraiana	Rw6G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	3 cut(s)	71, 452, 1075
AciI	CCGC	1 cut(s)	1243
AclWI	GGATC	5 cut(s)	421, 709, 823, 1148, 1161
AcsI	RAATTY	3 cut(s)	296, 380, 615
AcyI	GRCGYC	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	2 cut(s)	48, 812
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	6 cut(s)	26, 173, 385, 431, 877, 1183
AjnI	CCWGG	5 cut(s)	163, 1194, 1324, 1333, 1354
AleI	CACNNNNGTG	1 cut(s)	271
AluBI	AGCT	8 cut(s)	7, 515, 886, 943, 1042, 1120, 1138, 1297
AluI	AGCT	8 cut(s)	7, 515, 886, 943, 1042, 1120, 1138, 1297
AlwI	GGATC	5 cut(s)	421, 709, 823, 1148, 1161
AoxI	GGCC	2 cut(s)	752, 1058
ApeKI	GCWGC	3 cut(s)	40, 782, 1202
ApoI	RAATTY	3 cut(s)	296, 380, 615
AseI	ATTAAT	1 cut(s)	657
AspLEI	GCGC	2 cut(s)	74, 1343
AspS9I	GGNCC	3 cut(s)	365, 951, 1328
AsuHPI	GGTGA	2 cut(s)	497, 674
AvaII	GGWCC	3 cut(s)	365, 951, 1328
BamHI	GGATCC	1 cut(s)	1153
BanI	GGYRCC	3 cut(s)	71, 452, 1075
BarI	GAAGNNNNNNTAC	2 cut(s)	1175, 1207
BauI	CACGAG	1 cut(s)	806
BbvCI	CCTCAGC	1 cut(s)	1116
BbvI	GCAGC	3 cut(s)	27, 794, 1189
BccI	CCATC	3 cut(s)	335, 391, 980
BceAI	ACGGC	1 cut(s)	890
BciT130I	CCWGG	5 cut(s)	165, 1196, 1326, 1335, 1356
BfaI	CTAG	2 cut(s)	554, 794
BfmI	CTRYAG	1 cut(s)	1095
BfoI	RGCGCY	2 cut(s)	75, 1344
BfuAI	ACCTGC	1 cut(s)	245
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	3 cut(s)	41, 783, 1203
BlsI	GCNGC	3 cut(s)	42, 784, 1204
BmcAI	AGTACT	1 cut(s)	812
Bme1390I	CCNGG	5 cut(s)	165, 1196, 1326, 1335, 1356
Bme18I	GGWCC	3 cut(s)	365, 951, 1328
BmgT120I	GGNCC	3 cut(s)	365, 951, 1328
BmiI	GGNNCC	7 cut(s)	73, 366, 454, 952, 1077, 1155, 1233
BmrFI	CCNGG	5 cut(s)	165, 1196, 1326, 1335, 1356
BmrI	ACTGGG	2 cut(s)	1058, 1340
BmsI	GCATC	6 cut(s)	199, 562, 631, 681, 769, 856
BmuI	ACTGGG	2 cut(s)	1058, 1340
BpmI	CTGGAG	5 cut(s)	147, 807, 954, 1058, 1317
Bpu10I	CCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	1 cut(s)	652
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	906, 954, 1173
BsaWI	WCCGGW	2 cut(s)	1228, 1288
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	6 cut(s)	422, 447, 824, 1053, 1077, 1346
BseBI	CCWGG	5 cut(s)	165, 1196, 1326, 1335, 1356
BseDI	CCNNGG	3 cut(s)	906, 954, 1173
BseGI	GGATG	5 cut(s)	402, 506, 577, 622, 784
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	4 cut(s)	351, 567, 1097, 1130
BseNI	ACTGG	6 cut(s)	422, 447, 824, 1053, 1077, 1346
BseRI	GAGGAG	2 cut(s)	102, 109
BseXI	GCAGC	3 cut(s)	27, 794, 1189
BsgI	GTGCAG	2 cut(s)	223, 228
BshFI	GGCC	2 cut(s)	754, 1060
BshNI	GGYRCC	3 cut(s)	71, 452, 1075
BsiSI	CCGG	2 cut(s)	1229, 1289
BslFI	GGGAC	4 cut(s)	453, 964, 1262, 1318
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	4 cut(s)	453, 964, 1262, 1318
BsnI	GGCC	2 cut(s)	754, 1060
Bsp1407I	TGTACA	1 cut(s)	46
Bsp143I	GATC	6 cut(s)	413, 701, 828, 838, 1130, 1153
Bsp19I	CCATGG	1 cut(s)	1173
BspACI	CCGC	1 cut(s)	1243
BspANI	GGCC	2 cut(s)	754, 1060
BspCNI	CTCAG	4 cut(s)	350, 568, 1096, 1129
BspLI	GGNNCC	7 cut(s)	73, 366, 454, 952, 1077, 1155, 1233
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	5 cut(s)	421, 709, 823, 1148, 1161
BspT107I	GGYRCC	3 cut(s)	71, 452, 1075
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	6 cut(s)	422, 447, 824, 1053, 1077, 1346
BssECI	CCNNGG	3 cut(s)	906, 954, 1173
BssMI	GATC	6 cut(s)	413, 701, 828, 838, 1130, 1153
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	806
BssT1I	CCWWGG	2 cut(s)	954, 1173
Bst2BI	CACGAG	1 cut(s)	806
Bst2UI	CCWGG	5 cut(s)	165, 1196, 1326, 1335, 1356
Bst4CI	ACNGT	3 cut(s)	270, 560, 929
BstACI	GRCGYC	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	6 cut(s)	337, 405, 576, 1083, 1116, 1310
BstDSI	CCRYGG	2 cut(s)	906, 1173
BstF5I	GGATG	5 cut(s)	402, 506, 577, 622, 784
BstH2I	RGCGCY	2 cut(s)	75, 1344
BstHHI	GCGC	2 cut(s)	74, 1343
BstKTI	GATC	6 cut(s)	416, 704, 831, 841, 1133, 1156
BstMBI	GATC	6 cut(s)	413, 701, 828, 838, 1130, 1153
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 49, 779, 917, 1039, 1208
BstNI	CCWGG	5 cut(s)	165, 1196, 1326, 1335, 1356
BstSCI	CCNGG	5 cut(s)	163, 1194, 1324, 1333, 1354
BstSFI	CTRYAG	1 cut(s)	1095
BstV1I	GCAGC	3 cut(s)	27, 794, 1189
BstX2I	RGATCY	4 cut(s)	413, 701, 838, 1153
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	4 cut(s)	413, 701, 838, 1153
BsuRI	GGCC	2 cut(s)	754, 1060
BtgI	CCRYGG	2 cut(s)	906, 1173
BtsCI	GGATG	5 cut(s)	402, 506, 577, 622, 784
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	5 cut(s)	240, 266, 831, 1091, 1122
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	2 cut(s)	74, 1343
Cfr13I	GGNCC	3 cut(s)	365, 951, 1328
CsiI	ACCWGGT	1 cut(s)	1194
Csp6I	GTAC	2 cut(s)	47, 811
CspCI	CAANNNNNGTGG	2 cut(s)	1131, 1166
CviAII	CATG	5 cut(s)	722, 734, 750, 1104, 1174
CviQI	GTAC	2 cut(s)	47, 811
DdeI	CTNAG	6 cut(s)	337, 405, 576, 1083, 1116, 1310
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	6 cut(s)	415, 703, 830, 840, 1132, 1155
DpnII	GATC	6 cut(s)	413, 701, 828, 838, 1130, 1153
DraIII	CACNNNGTG	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	954, 1173
Eco147I	AGGCCT	1 cut(s)	1060
Eco47I	GGWCC	3 cut(s)	365, 951, 1328
EcoO109I	RGGNCCY	1 cut(s)	951
EcoRII	CCWGG	5 cut(s)	163, 1194, 1324, 1333, 1354
EcoT14I	CCWWGG	2 cut(s)	954, 1173
EcoT22I	ATGCAT	1 cut(s)	696
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	2 cut(s)	954, 1173
FaeI	CATG	5 cut(s)	725, 737, 753, 1107, 1177
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	4 cut(s)	453, 964, 1262, 1318
FatI	CATG	5 cut(s)	721, 733, 749, 1103, 1173
Fnu4HI	GCNGC	3 cut(s)	41, 783, 1203
FokI	GGATG	5 cut(s)	409, 513, 584, 609, 791
Fsp4HI	GCNGC	3 cut(s)	41, 783, 1203
FspBI	CTAG	2 cut(s)	554, 794
GlaI	GCGC	2 cut(s)	73, 1342
GluI	GCNGC	3 cut(s)	41, 783, 1203
GsuI	CTGGAG	5 cut(s)	147, 807, 954, 1058, 1317
HaeII	RGCGCY	2 cut(s)	75, 1344
HaeIII	GGCC	2 cut(s)	754, 1060
HapII	CCGG	2 cut(s)	1229, 1289
HhaI	GCGC	2 cut(s)	74, 1343
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	5 cut(s)	725, 737, 753, 1107, 1177
Hin6I	GCGC	2 cut(s)	72, 1341
HinP1I	GCGC	2 cut(s)	72, 1341
HindIII	AAGCTT	3 cut(s)	5, 884, 1136
HinfI	GANTC	3 cut(s)	495, 665, 1169
HpaII	CCGG	2 cut(s)	1229, 1289
HphI	GGTGA	2 cut(s)	497, 674
Hpy166II	GTNNAC	2 cut(s)	203, 682
Hpy188I	TCNGA	6 cut(s)	330, 340, 500, 843, 892, 1251
Hpy188III	TCNNGA	6 cut(s)	467, 547, 569, 776, 971, 1037
Hpy8I	GTNNAC	2 cut(s)	203, 682
HpyAV	CCTTC	3 cut(s)	170, 343, 1050
HpyCH4III	ACNGT	3 cut(s)	270, 560, 929
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 49, 779, 917, 1039, 1208
HpyF3I	CTNAG	6 cut(s)	337, 405, 576, 1083, 1116, 1310
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	725, 737, 753, 1107, 1177
HspAI	GCGC	2 cut(s)	72, 1341
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	6 cut(s)	413, 701, 828, 838, 1130, 1153
LmnI	GCTCC	4 cut(s)	115, 973, 1039, 1294
Lsp1109I	GCAGC	3 cut(s)	27, 794, 1189
LweI	GCATC	6 cut(s)	199, 562, 631, 681, 769, 856
MabI	ACCWGGT	1 cut(s)	1194
MaeI	CTAG	2 cut(s)	554, 794
MaeIII	GTNAC	5 cut(s)	232, 662, 1099, 1238, 1315
MalI	GATC	6 cut(s)	415, 703, 830, 840, 1132, 1155
MboI	GATC	6 cut(s)	413, 701, 828, 838, 1130, 1153
MboII	GAAGA	6 cut(s)	5, 8, 11, 14, 185, 1065
MfeI	CAATTG	2 cut(s)	135, 716
MflI	RGATCY	4 cut(s)	413, 701, 838, 1153
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	696
MseI	TTAA	3 cut(s)	657, 746, 1065
MslI	CAYNNNNRTG	3 cut(s)	271, 395, 732
MspI	CCGG	2 cut(s)	1229, 1289
MspR9I	CCNGG	5 cut(s)	165, 1196, 1326, 1335, 1356
MunI	CAATTG	2 cut(s)	135, 716
MvaI	CCWGG	5 cut(s)	165, 1196, 1326, 1335, 1356
MwoI	GCNNNNNNNGC	6 cut(s)	40, 49, 779, 917, 1039, 1208
NarI	GGCGCC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	1173
NdeII	GATC	6 cut(s)	413, 701, 828, 838, 1130, 1153
NlaIII	CATG	5 cut(s)	725, 737, 753, 1107, 1177
NlaIV	GGNNCC	7 cut(s)	73, 366, 454, 952, 1077, 1155, 1233
NmuCI	GTSAC	2 cut(s)	662, 1099
NsiI	ATGCAT	1 cut(s)	696
OliI	CACNNNNGTG	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	1060
PfeI	GAWTC	2 cut(s)	495, 1169
PfoI	TCCNGGA	2 cut(s)	163, 1333
PkrI	GCNGC	3 cut(s)	42, 784, 1204
PleI	GAGTC	1 cut(s)	659
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	659
PpuMI	RGGWCCY	1 cut(s)	951
PshBI	ATTAAT	1 cut(s)	657
PsiI	TTATAA	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	951
Psp6I	CCWGG	5 cut(s)	163, 1194, 1324, 1333, 1354
PspGI	CCWGG	5 cut(s)	163, 1194, 1324, 1333, 1354
PspN4I	GGNNCC	7 cut(s)	73, 366, 454, 952, 1077, 1155, 1233
PspPI	GGNCC	3 cut(s)	365, 951, 1328
PspPPI	RGGWCCY	1 cut(s)	951
PsuI	RGATCY	4 cut(s)	413, 701, 838, 1153
RsaI	GTAC	2 cut(s)	48, 812
RsaNI	GTAC	2 cut(s)	47, 811
RseI	CAYNNNNRTG	3 cut(s)	271, 395, 732
SaqAI	TTAA	3 cut(s)	657, 746, 1065
SatI	GCNGC	3 cut(s)	41, 783, 1203
Sau3AI	GATC	6 cut(s)	413, 701, 828, 838, 1130, 1153
Sau96I	GGNCC	3 cut(s)	365, 951, 1328
ScaI	AGTACT	1 cut(s)	812
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	5 cut(s)	165, 1196, 1326, 1335, 1356
SexAI	ACCWGGT	1 cut(s)	1194
SfaNI	GCATC	6 cut(s)	199, 562, 631, 681, 769, 856
SfcI	CTRYAG	1 cut(s)	1095
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	3 cut(s)	365, 951, 1328
SmiMI	CAYNNNNRTG	3 cut(s)	271, 395, 732
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
SseBI	AGGCCT	1 cut(s)	1060
SsiI	CCGC	1 cut(s)	1243
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	2 cut(s)	478, 856
SspMI	CTAG	2 cut(s)	554, 794
StuI	AGGCCT	1 cut(s)	1060
StyD4I	CCNGG	5 cut(s)	163, 1194, 1324, 1333, 1354
StyI	CCWWGG	2 cut(s)	954, 1173
TaaI	ACNGT	3 cut(s)	270, 560, 929
TatI	WGTACW	2 cut(s)	46, 810
TfiI	GAWTC	2 cut(s)	495, 1169
Tru1I	TTAA	3 cut(s)	657, 746, 1065
Tru9I	TTAA	3 cut(s)	657, 746, 1065
TscAI	CASTG	5 cut(s)	247, 273, 831, 1091, 1129
TseFI	GTSAC	2 cut(s)	662, 1099
TseI	GCWGC	3 cut(s)	40, 782, 1202
Tsp45I	GTSAC	2 cut(s)	662, 1099
TspDTI	ATGAA	4 cut(s)	17, 132, 664, 779
TspGWI	ACGGA	2 cut(s)	714, 1013
TspRI	CASTG	5 cut(s)	247, 273, 831, 1091, 1129
VpaK11BI	GGWCC	3 cut(s)	365, 951, 1328
VspI	ATTAAT	1 cut(s)	657
XapI	RAATTY	3 cut(s)	296, 380, 615
XspI	CTAG	2 cut(s)	554, 794
ZrmI	AGTACT	1 cut(s)	812
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.