Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003140

Physical Location & Seq

Genomic Coordinates Forward (+)

41628227 .. 41628785

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTTGTTCCTTCTCAAACTCATCTTCTTCGCAGTGAGTCTCGTATCGAATTTGGTTTCACGGTTGATGTTCTCTACCATTGCTCACCTTCTAGTGTTATTGATTCATGGATTCAAACTTCCAGGCCAAGCCATCCATGGTGGATTAGGACAAGTCTCAGAGGCCATCAAGTCATGTTTGGAGTACTTTCTTGGGCTTATCATGGAAGCAATCAGTGCTCTAATATCTACTTTCTTTGATTATCTTATAGAAAGTGTTACAGGGTCTGCTGCAGTTACCACATCTACAATTTGGGATCTCTTGGAAAAAACAAAGACTTCACTTGATGCGCTCAAAAGTTTCCAGGAGGCTTTCGAGGGACTACCGGAGATGATTTTTAACATTGTGATGGATTTGTGGAACAATTACAAGGATGCTTTAGGATATGTTGTAGAAAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

148

Amino Acids

16.33

Weight (kDa)

4.86

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT4G32000 AT4G32000 AT4G32000 AT4G32000 AT5G11020 AT5G11020 AT5G11020 AT5G11020
fragaria_vesca	FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240
malus_domestica	MD08G1154200.v1.1 MD15G1131500.v1.1
prunus_persica	Prupe.1G486900_v2.0.a1 Prupe.1G486900_v2.0.a1
pyrus_communis	pycom08g13380 pycom15g11870
rosa_chinensis	RchiOBHm_Chr6g0297161
rosa_laevigata	RLG00000011626
rosa_multiflora	Rmu_sc0005385.1_g000026
rosa_roxburghii	Rroxscaffold_7G00170830
rosa_rugosa	Rorug06G0269300 Rorug06G0269400
rosa_samantha	Rh6AG380500
rosa_wichuraiana	Rw6G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	124, 345
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	47, 163
AlwI	GGATC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	127, 165
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	143, 176, 385
BciT130I	CCWGG	2 cut(s)	126, 347
BcoDI	GTCTC	2 cut(s)	47, 163
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	273
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	126, 347
BmrFI	CCNGG	2 cut(s)	126, 347
BmsI	GCATC	2 cut(s)	319, 406
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	126, 347
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	135, 421
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	129, 167
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	47, 163
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	129, 167
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	139
BspANI	GGCC	2 cut(s)	129, 167
BspCNI	CTCAG	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	126, 347
Bst4CI	ACNGT	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	135, 421
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	2 cut(s)	47, 163
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	2 cut(s)	126, 347
BstSCI	CCNGG	2 cut(s)	124, 345
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	129, 167
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	135, 421
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 223
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	110, 140, 177, 205
CviJI	RGCY	6 cut(s)	5, 129, 134, 167, 199, 353
CviKI_1	RGCY	6 cut(s)	5, 129, 134, 167, 199, 353
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	124, 345
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	4 cut(s)	113, 143, 180, 208
FaiI	YATR	6 cut(s)	111, 141, 178, 206, 251, 429
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	109, 139, 176, 204
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	2 cut(s)	122, 428
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	129, 167
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	4 cut(s)	113, 143, 180, 208
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	3 cut(s)	40, 106, 114
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	23, 101
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	113, 143, 180, 208
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	111, 138, 249, 332, 359, 381
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	319, 406
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	259, 277
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	19, 22
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	52, 291, 406
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	157, 343, 352
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	126, 347
MvaI	CCWGG	2 cut(s)	126, 347
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	4 cut(s)	113, 143, 180, 208
PfeI	GAWTC	2 cut(s)	106, 114
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	124, 345
PspGI	CCWGG	2 cut(s)	124, 345
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	126, 347
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	319, 406
SfcI	CTRYAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	52, 291, 406
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	124, 345
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	50, 357
TasI	AATT	3 cut(s)	52, 291, 406
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	106, 114
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	2 cut(s)	42, 223
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	42, 223
XapI	RAATTY	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.