Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005385.1

Orthogroup ID

OG0003140

Physical Location & Seq

Genomic Coordinates Reverse (-)

102662 .. 105686

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005385.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atgtctgctcctgttcccccaccaagcttctcgcccacttccccaattgattcatcaatggcttccttctctccaggtattcaacaaggaagtgaacggaatcaaatggatccgcataagaaaccactcattgccctcattgtgacttgtgcaacacttggtgcagttttgttgtcactattgtgtttgtggttttatcacaggaagtacaagttccttaagagaaatgctcagagctcagatgccgagaaggagctggcattgtctccatttttcggtaaattcaattctataaagatggttggaaacaaagggtctgtgacagtaattgagtataagctaattgaaaagggcactagcaattttcgggagagtaatatcttgggcgagggtggatttggatgcgtttaccgggctcgtttggatgatagtttgattgttgctgtcaagaaactggactgtgcaactgaggatgctgaaaaagaatttgagaatgaggtggagttattacataaaattcagcatccgaatataatttcttttttgggctgtagtattgatggtgactccaggttcattgtttacgaattgatgcataatggttctgtggaaactcaattgcatggaccctctcatggatcggcattaacatggcctatgcgaatgaaaatcgctctggatgctgcaagaggattagagtatttgcatgagtattgcaaccctccagtgatccatagagatctgaaaacatctaatattcttttggatgccaacttcaatgccaagctctctgattttggtcttgctgtggctgatggggccaaaaacaataataacatcaagctttctggcaccttgggttatgttgctcccgagtatcttttggatggtaagttgacggacaagagtgatgtctatgcttttggagttgtacttttggagcttctactaggaagaaggcctgtagaaaaactggcaccaactcaatgccaatccttagtcacatgggccatgcctcagcttactgaccgatcaaagcttccccacattgtggatcccatgatcaaagatacaatggatctaaagcacttgtaccaggttgctgctgtagctgtgttatgtgtgcaacccgaaccaagttaccgcccactaataacagatgttttgcattcccttgtccctcttgttcctgtcgagcttggagggacacttagagttacacaagctgcacctccaggaaacccccaagagtcttctgatcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

421

Amino Acids

46.29

Weight (kDa)

6.24

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT4G32000 AT4G32000 AT4G32000 AT4G32000 AT5G11020 AT5G11020 AT5G11020 AT5G11020
fragaria_vesca	FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240
malus_domestica	MD08G1154200.v1.1 MD15G1131500.v1.1
prunus_persica	Prupe.1G486900_v2.0.a1 Prupe.1G486900_v2.0.a1
pyrus_communis	pycom08g13380 pycom15g11870
rosa_chinensis	RchiOBHm_Chr6g0297161
rosa_laevigata	RLG00000011626
rosa_multiflora	Rmu_sc0005385.1_g000026
rosa_roxburghii	Rroxscaffold_7G00170830
rosa_rugosa	Rorug06G0269300 Rorug06G0269400
rosa_samantha	Rh6AG380500
rosa_wichuraiana	Rw6G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	851, 976
AccB7I	CCANNNNNTGG	1 cut(s)	1051
AciI	CCGC	2 cut(s)	113, 1144
AclWI	GGATC	7 cut(s)	104, 117, 646, 724, 1049, 1062, 1086
AcsI	RAATTY	3 cut(s)	281, 485, 516
AdeI	CACNNNGTG	2 cut(s)	161, 1051
AfaI	GTAC	3 cut(s)	209, 933, 1094
AfiI	CCNNNNNNNGG	3 cut(s)	275, 635, 1051
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	83, 286, 347, 778
AjnI	CCWGG	4 cut(s)	73, 569, 1095, 1234
AleI	CACNNNNGTG	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	7 cut(s)	104, 117, 646, 724, 1049, 1062, 1086
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	4 cut(s)	653, 819, 959, 1008
ApeKI	GCWGC	3 cut(s)	683, 1103, 1226
ApoI	RAATTY	3 cut(s)	281, 485, 516
AspS9I	GGNCC	3 cut(s)	626, 819, 1008
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	356
BamHI	GGATCC	2 cut(s)	109, 1054
BanI	GGYRCC	2 cut(s)	851, 976
BanII	GRGCYC	2 cut(s)	239, 418
BbsI	GAAGAC	1 cut(s)	1245
Bbv12I	GWGCWC	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	1017
BbvI	GCAGC	3 cut(s)	670, 1090, 1213
BccI	CCATC	4 cut(s)	292, 554, 809, 881
BciT130I	CCWGG	4 cut(s)	75, 571, 1097, 1236
BclI	TGATCA	2 cut(s)	1062, 1258
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	2 cut(s)	357, 950
BfmI	CTRYAG	3 cut(s)	550, 963, 1107
BfrI	CTTAAG	1 cut(s)	218
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	3 cut(s)	684, 1104, 1227
BlsI	GCNGC	3 cut(s)	685, 1105, 1228
Bme1390I	CCNGG	5 cut(s)	75, 413, 571, 1097, 1236
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	3 cut(s)	626, 819, 1008
BmiI	GGNNCC	6 cut(s)	111, 628, 820, 853, 978, 1056
BmrFI	CCNGG	5 cut(s)	75, 413, 571, 1097, 1236
BmsI	GCATC	7 cut(s)	232, 392, 463, 532, 582, 670, 757
BpiI	GAAGAC	1 cut(s)	1245
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	4 cut(s)	57, 553, 708, 1218
Bpu10I	CCTNAGC	1 cut(s)	1017
BpuMI	CCSGG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	855
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 635, 1051
Bse1I	ACTGG	3 cut(s)	459, 725, 978
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	4 cut(s)	75, 571, 1097, 1236
BseDI	CCNNGG	1 cut(s)	855
BseGI	GGATG	7 cut(s)	407, 430, 478, 523, 685, 772, 892
BseLI	CCNNNNNNNGG	3 cut(s)	275, 635, 1051
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	4 cut(s)	245, 252, 459, 1031
BseNI	ACTGG	3 cut(s)	459, 725, 978
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	670, 1090, 1213
BsgI	GTGCAG	2 cut(s)	183, 1212
BshFI	GGCC	4 cut(s)	655, 821, 961, 1010
BshNI	GGYRCC	2 cut(s)	851, 976
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	1 cut(s)	412
BslFI	GGGAC	2 cut(s)	1163, 1219
BslI	CCNNNNNNNGG	3 cut(s)	275, 635, 1051
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	1163, 1219
BsmI	GAATGC	1 cut(s)	1168
BsnI	GGCC	4 cut(s)	655, 821, 961, 1010
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	3 cut(s)	239, 356, 418
Bsp143I	GATC	9 cut(s)	109, 638, 729, 739, 1031, 1054, 1062, 1078, 1258
BspACI	CCGC	2 cut(s)	113, 1144
BspANI	GGCC	4 cut(s)	655, 821, 961, 1010
BspCNI	CTCAG	4 cut(s)	244, 251, 460, 1030
BspLI	GGNNCC	6 cut(s)	111, 628, 820, 853, 978, 1056
BspPI	GGATC	7 cut(s)	104, 117, 646, 724, 1049, 1062, 1086
BspT107I	GGYRCC	2 cut(s)	851, 976
BspTI	CTTAAG	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	3 cut(s)	459, 725, 978
BssECI	CCNNGG	1 cut(s)	855
BssMI	GATC	9 cut(s)	109, 638, 729, 739, 1031, 1054, 1062, 1078, 1258
BssT1I	CCWWGG	1 cut(s)	855
Bst2UI	CCWGG	4 cut(s)	75, 571, 1097, 1236
Bst4CI	ACNGT	2 cut(s)	325, 461
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	6 cut(s)	231, 238, 468, 997, 1017, 1211
BstF5I	GGATG	7 cut(s)	407, 430, 478, 523, 685, 772, 892
BstKTI	GATC	9 cut(s)	112, 641, 732, 742, 1034, 1057, 1065, 1081, 1261
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	9 cut(s)	109, 638, 729, 739, 1031, 1054, 1062, 1078, 1258
BstMWI	GCNNNNNNNGC	3 cut(s)	680, 818, 1109
BstNI	CCWGG	4 cut(s)	75, 571, 1097, 1236
BstSCI	CCNGG	5 cut(s)	73, 411, 569, 1095, 1234
BstSFI	CTRYAG	3 cut(s)	550, 963, 1107
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	670, 1090, 1213
BstV2I	GAAGAC	1 cut(s)	1245
BstX2I	RGATCY	4 cut(s)	109, 739, 1054, 1078
BstYI	RGATCY	4 cut(s)	109, 739, 1054, 1078
BsuRI	GGCC	4 cut(s)	655, 821, 961, 1010
BtsCI	GGATG	7 cut(s)	407, 430, 478, 523, 685, 772, 892
BtsIMutI	CAGTG	2 cut(s)	732, 1261
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	626, 819, 1008
CsiI	ACCWGGT	1 cut(s)	1095
Csp6I	GTAC	3 cut(s)	208, 932, 1093
CviAII	CATG	7 cut(s)	623, 635, 651, 707, 1005, 1012, 1060
CviQI	GTAC	3 cut(s)	208, 932, 1093
DdeI	CTNAG	6 cut(s)	231, 238, 468, 997, 1017, 1211
DpnI	GATC	9 cut(s)	111, 640, 731, 741, 1033, 1056, 1064, 1080, 1260
DpnII	GATC	9 cut(s)	109, 638, 729, 739, 1031, 1054, 1062, 1078, 1258
DraIII	CACNNNGTG	2 cut(s)	161, 1051
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	855
Eco147I	AGGCCT	1 cut(s)	961
Eco24I	GRGCYC	2 cut(s)	239, 418
Eco47I	GGWCC	1 cut(s)	626
Eco53kI	GAGCTC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	872
EcoICRI	GAGCTC	1 cut(s)	237
EcoRII	CCWGG	4 cut(s)	73, 569, 1095, 1234
EcoT14I	CCWWGG	1 cut(s)	855
EcoT22I	ATGCAT	1 cut(s)	597
EcoT38I	GRGCYC	2 cut(s)	239, 418
ErhI	CCWWGG	1 cut(s)	855
FaeI	CATG	7 cut(s)	626, 638, 654, 710, 1008, 1015, 1063
FaqI	GGGAC	2 cut(s)	1163, 1219
FatI	CATG	7 cut(s)	622, 634, 650, 706, 1004, 1011, 1059
FbaI	TGATCA	2 cut(s)	1062, 1258
Fnu4HI	GCNGC	3 cut(s)	684, 1104, 1227
FokI	GGATG	7 cut(s)	414, 437, 485, 510, 692, 779, 899
FriOI	GRGCYC	2 cut(s)	239, 418
Fsp4HI	GCNGC	3 cut(s)	684, 1104, 1227
FspBI	CTAG	2 cut(s)	357, 950
GluI	GCNGC	3 cut(s)	684, 1104, 1227
GsuI	CTGGAG	4 cut(s)	57, 553, 708, 1218
HaeIII	GGCC	4 cut(s)	655, 821, 961, 1010
HapII	CCGG	1 cut(s)	412
Hin1II	CATG	7 cut(s)	626, 638, 654, 710, 1008, 1015, 1063
HincII	GTYRAC	1 cut(s)	897
HindII	GTYRAC	1 cut(s)	897
HindIII	AAGCTT	3 cut(s)	25, 842, 1037
HinfI	GANTC	4 cut(s)	50, 100, 566, 1250
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	4 cut(s)	95, 409, 583, 897
Hpy188I	TCNGA	6 cut(s)	234, 241, 528, 744, 793, 1258
Hpy188III	TCNNGA	4 cut(s)	368, 448, 677, 872
Hpy8I	GTNNAC	4 cut(s)	95, 409, 583, 897
HpyAV	CCTTC	3 cut(s)	76, 244, 951
HpyCH4III	ACNGT	2 cut(s)	325, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	680, 818, 1109
HpyF3I	CTNAG	6 cut(s)	231, 238, 468, 997, 1017, 1211
Hsp92II	CATG	7 cut(s)	626, 638, 654, 710, 1008, 1015, 1063
Ksp22I	TGATCA	2 cut(s)	1062, 1258
Kzo9I	GATC	9 cut(s)	109, 638, 729, 739, 1031, 1054, 1062, 1078, 1258
LmnI	GCTCC	4 cut(s)	13, 253, 874, 940
Lsp1109I	GCAGC	3 cut(s)	670, 1090, 1213
LweI	GCATC	7 cut(s)	232, 392, 463, 532, 582, 670, 757
MabI	ACCWGGT	1 cut(s)	1095
MaeI	CTAG	2 cut(s)	357, 950
MaeIII	GTNAC	7 cut(s)	142, 174, 319, 563, 1000, 1139, 1216
MalI	GATC	9 cut(s)	111, 640, 731, 741, 1033, 1056, 1064, 1080, 1260
MboI	GATC	9 cut(s)	109, 638, 729, 739, 1031, 1054, 1062, 1078, 1258
MboII	GAAGA	2 cut(s)	966, 1245
MfeI	CAATTG	2 cut(s)	45, 617
MflI	RGATCY	4 cut(s)	109, 739, 1054, 1078
MhlI	GDGCHC	3 cut(s)	239, 356, 418
MlyI	GAGTC	2 cut(s)	560, 1259
MmeI	TCCRAC	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	597
MseI	TTAA	2 cut(s)	219, 647
MslI	CAYNNNNRTG	2 cut(s)	181, 649
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	5 cut(s)	75, 413, 571, 1097, 1236
MunI	CAATTG	2 cut(s)	45, 617
Mva1269I	GAATGC	1 cut(s)	1168
MvaI	CCWGG	4 cut(s)	75, 571, 1097, 1236
MwoI	GCNNNNNNNGC	3 cut(s)	680, 818, 1109
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	9 cut(s)	109, 638, 729, 739, 1031, 1054, 1062, 1078, 1258
NlaIII	CATG	7 cut(s)	626, 638, 654, 710, 1008, 1015, 1063
NlaIV	GGNNCC	6 cut(s)	111, 628, 820, 853, 978, 1056
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	5 cut(s)	142, 174, 319, 563, 1000
NsiI	ATGCAT	1 cut(s)	597
OliI	CACNNNNGTG	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	961
PctI	GAATGC	1 cut(s)	1168
PfeI	GAWTC	2 cut(s)	50, 100
PflMI	CCANNNNNTGG	1 cut(s)	1051
PfoI	TCCNGGA	1 cut(s)	1234
PkrI	GCNGC	3 cut(s)	685, 1105, 1228
PleI	GAGTC	2 cut(s)	560, 1258
PpsI	GAGTC	2 cut(s)	560, 1258
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	4 cut(s)	73, 569, 1095, 1234
PspGI	CCWGG	4 cut(s)	73, 569, 1095, 1234
PspN4I	GGNNCC	6 cut(s)	111, 628, 820, 853, 978, 1056
PspPI	GGNCC	3 cut(s)	626, 819, 1008
PsuI	RGATCY	4 cut(s)	109, 739, 1054, 1078
RsaI	GTAC	3 cut(s)	209, 933, 1094
RsaNI	GTAC	3 cut(s)	208, 932, 1093
RseI	CAYNNNNRTG	2 cut(s)	181, 649
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	219, 647
SatI	GCNGC	3 cut(s)	684, 1104, 1227
Sau3AI	GATC	9 cut(s)	109, 638, 729, 739, 1031, 1054, 1062, 1078, 1258
Sau96I	GGNCC	3 cut(s)	626, 819, 1008
SchI	GAGTC	2 cut(s)	560, 1259
ScrFI	CCNGG	5 cut(s)	75, 413, 571, 1097, 1236
SduI	GDGCHC	3 cut(s)	239, 356, 418
SexAI	ACCWGGT	1 cut(s)	1095
SfaNI	GCATC	7 cut(s)	232, 392, 463, 532, 582, 670, 757
SfcI	CTRYAG	3 cut(s)	550, 963, 1107
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	2 cut(s)	181, 649
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SseBI	AGGCCT	1 cut(s)	961
SsiI	CCGC	2 cut(s)	113, 1144
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	2 cut(s)	357, 950
SstI	GAGCTC	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	961
StyD4I	CCNGG	5 cut(s)	73, 411, 569, 1095, 1234
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	2 cut(s)	325, 461
TaqI	TCGA	1 cut(s)	1194
TaqII	GACCGA	1 cut(s)	1044
TatI	WGTACW	2 cut(s)	207, 931
TfiI	GAWTC	2 cut(s)	50, 100
Tru1I	TTAA	2 cut(s)	219, 647
Tru9I	TTAA	2 cut(s)	219, 647
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	5 cut(s)	142, 174, 319, 563, 1000
TseI	GCWGC	3 cut(s)	683, 1103, 1226
Tsp45I	GTSAC	5 cut(s)	142, 174, 319, 563, 1000
TspDTI	ATGAA	3 cut(s)	42, 565, 680
TspGWI	ACGGA	2 cut(s)	112, 914
TspRI	CASTG	1 cut(s)	732
Van91I	CCANNNNNTGG	1 cut(s)	1051
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	3 cut(s)	281, 485, 516
XspI	CTAG	2 cut(s)	357, 950
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.