Rroxscaffold_7G00170830

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
11178338 .. 11182861
4524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170830.1

Sequence Viewer

Length: 1380 bp
ATGAAGCTTGTTTTTGTTGTTGTAAATTTTGTTGCTTTTGTGCTTGTAGACCAAAACAAGCCATGCCCTTTTTGTGTTGGAGCCACAGTTGTACCTGACCCGCTTGTTTCTTCCATGTCTGCTCCTCTTCCCCCACCAAGCTTCTCACCCACTTCCCCAATTGCTTCATCAATGGCTTCCTTCTCTCCAGGTATTCAACAAGGAAGTGAAGGGAATCAAATGGATCCGCATAAGAAACTGCTTATTGCCCTTATTGTGACTTGTGCAACACTTGGTGCAGTTTTGTTGTCACTATTGTGTTTGTGGTTTTATCACAGGAAGTACAAGTTCCTTAAGAGAAATGCTCAGAGCTCAGATGCCGAGAAGGAGCTAGCATTGTCTCCATTTTTCGGTAAATTTAATTCCATAAAGATGGTTGGAAACAAAGGGTCTGTGACAGTAATTGAGTATAAGCTAATAGAAAAAGGCACTAGCAATTTTCGGGAGAGTAACATCTTGGGCGAGGGTGGATTTGGATGCGTTTACCGGGCTCGTTTGGATGATAATTTGATTGTTGCGGTCAAGAAACTGGACTGTGCAACTGAGGATGCTGAAAAAGAATTTGAGAATGAGGTGGAGTTATTACATAAAATTCAGCATCCGAATATAATTTCTTTTTTGGGCTGTAGTATTGATGGTGACTCAAGGTTCATTGTTTATGAATTGATGCATAATGGTTCTGTGGAAACTCAATTGCATGGACCCTCTCATGGATCGGCATTAACATGGCCTATGCGAATGAAAATTGCTCTGGATGCTGCAAGAGGATTAGAGTATTTGCATGAGTACTGCAACCCTCCAGTGATCCATAGAGATCTGAAAACATCTAATATTCTTTTGGATGCCAACTTCAATGCCAAGCTCTCTGATTTTGGTCTTGCTGTGGCTGATGGGGCCAAAAACAATAATAACATCAAGCTTTCTGGCACCTTGGGTTATGTTGCTCCCGAGTATCTTTTGGATGGTAAGTTGACCGACAAGAGTGATGTGTATGCTTTTGGAGTTGTACTATTGGAGCTTCTACTAGGAAGAAGGCCTGTAGAAAAACTGGCACCAACTCAATGCCAATCCTTAGTCACATGGGCCATGCCTCAGCTTACTGACCGATCAAAGCTTCCCCACATTGTGGATCCCATGATCAAAGATACAATGGATCTAAAGCACTTGTACCAGGTTGCTGCTGTAGCTGTGTTATGTGTGCAACCCGAACCAAGTTACCGCCCACTAATAACCGACGTTTTGCATTCTCTTGTCCCTCTTGTTCCTGTCGAGCTTGGAGGGACACTTAGAGTTACACAACCTGCACCTCCAGGAAACCCCCTAGAGTCTTCTGATCACTGA

Protein Analysis

459

Amino Acids

50.28

Weight (kDa)

6.24

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 161 - 379 4.3e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 164 - 395 2.4e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1348
AccB1I GGYRCC 2 cut(s) 965, 1090
AccB7I CCANNNNNTGG 1 cut(s) 1165
AccI GTMKAC 1 cut(s) 48
AciI CCGC 4 cut(s) 101, 227, 557, 1258
AclWI GGATC 7 cut(s) 218, 231, 760, 838, 1163, 1176, 1200
AcsI RAATTY 4 cut(s) 25, 395, 599, 630
AdeI CACNNNGTG 2 cut(s) 275, 1165
AfaI GTAC 5 cut(s) 93, 323, 827, 1047, 1208
AfiI CCNNNNNNNGG 3 cut(s) 389, 749, 1165
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 2 cut(s) 197, 892
AjnI CCWGG 3 cut(s) 187, 1209, 1348
AleI CACNNNNGTG 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 7 cut(s) 218, 231, 760, 838, 1163, 1176, 1200
Ama87I CYCGRG 1 cut(s) 986
AoxI GGCC 4 cut(s) 767, 933, 1073, 1122
ApeKI GCWGC 2 cut(s) 797, 1217
ApoI RAATTY 4 cut(s) 25, 395, 599, 630
AspS9I GGNCC 3 cut(s) 740, 933, 1122
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 138, 689
AsuNHI GCTAGC 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 1 cut(s) 740
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BamHI GGATCC 2 cut(s) 223, 1168
BanI GGYRCC 2 cut(s) 965, 1090
BanII GRGCYC 2 cut(s) 353, 532
BbsI GAAGAC 1 cut(s) 1359
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 1131
BbvI GCAGC 2 cut(s) 784, 1204
BccI CCATC 4 cut(s) 406, 668, 923, 995
BciT130I CCWGG 3 cut(s) 189, 1211, 1350
BclI TGATCA 2 cut(s) 1176, 1372
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 4 cut(s) 371, 471, 1064, 1361
BfmI CTRYAG 3 cut(s) 664, 1077, 1221
BfrI CTTAAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 1348
BglII AGATCT 1 cut(s) 853
BisI GCNGC 2 cut(s) 798, 1218
BlsI GCNGC 2 cut(s) 799, 1219
BmcAI AGTACT 1 cut(s) 827
Bme1390I CCNGG 4 cut(s) 189, 527, 1211, 1350
Bme18I GGWCC 1 cut(s) 740
BmeT110I CYCGRG 1 cut(s) 986
BmgT120I GGNCC 3 cut(s) 740, 933, 1122
BmiI GGNNCC 7 cut(s) 82, 225, 742, 934, 967, 1092, 1170
BmrFI CCNGG 4 cut(s) 189, 527, 1211, 1350
BmsI GCATC 7 cut(s) 346, 506, 577, 646, 696, 784, 871
BmtI GCTAGC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 1359
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpmI CTGGAG 3 cut(s) 171, 822, 1332
Bpu10I CCTNAGC 1 cut(s) 1131
BpuEI CTTGAG 1 cut(s) 667
BpuMI CCSGG 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 969
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 749, 1165
Bse1I ACTGG 3 cut(s) 573, 839, 1092
BseBI CCWGG 3 cut(s) 189, 1211, 1350
BseDI CCNNGG 1 cut(s) 969
BseGI GGATG 7 cut(s) 521, 544, 592, 637, 799, 886, 1006
BseLI CCNNNNNNNGG 3 cut(s) 389, 749, 1165
BseMII CTCAG 4 cut(s) 359, 366, 573, 1145
BseNI ACTGG 3 cut(s) 573, 839, 1092
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 784, 1204
BsgI GTGCAG 2 cut(s) 297, 1326
BshFI GGCC 4 cut(s) 769, 935, 1075, 1124
BshNI GGYRCC 2 cut(s) 965, 1090
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 986
BsiSI CCGG 1 cut(s) 526
BslFI GGGAC 2 cut(s) 1277, 1333
BslI CCNNNNNNNGG 3 cut(s) 389, 749, 1165
BsmAI GTCTC 1 cut(s) 384
BsmFI GGGAC 2 cut(s) 1277, 1333
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 4 cut(s) 769, 935, 1075, 1124
BsoBI CYCGRG 1 cut(s) 986
Bsp1286I GDGCHC 2 cut(s) 353, 532
Bsp143I GATC 9 cut(s) 223, 752, 843, 853, 1145, 1168, 1176, 1192, 1372
BspACI CCGC 4 cut(s) 101, 227, 557, 1258
BspANI GGCC 4 cut(s) 769, 935, 1075, 1124
BspCNI CTCAG 4 cut(s) 358, 365, 574, 1144
BspLI GGNNCC 7 cut(s) 82, 225, 742, 934, 967, 1092, 1170
BspMI ACCTGC 1 cut(s) 1348
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 7 cut(s) 218, 231, 760, 838, 1163, 1176, 1200
BspT107I GGYRCC 2 cut(s) 965, 1090
BspTI CTTAAG 1 cut(s) 332
BsrI ACTGG 3 cut(s) 573, 839, 1092
BssECI CCNNGG 1 cut(s) 969
BssMI GATC 9 cut(s) 223, 752, 843, 853, 1145, 1168, 1176, 1192, 1372
BssT1I CCWWGG 1 cut(s) 969
Bst2UI CCWGG 3 cut(s) 189, 1211, 1350
Bst4CI ACNGT 3 cut(s) 88, 439, 575
Bst6I CTCTTC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 6 cut(s) 345, 352, 582, 1111, 1131, 1325
BstF5I GGATG 7 cut(s) 521, 544, 592, 637, 799, 886, 1006
BstKTI GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 9 cut(s) 223, 752, 843, 853, 1145, 1168, 1176, 1192, 1372
BstMWI GCNNNNNNNGC 3 cut(s) 794, 932, 1223
BstNI CCWGG 3 cut(s) 189, 1211, 1350
BstSCI CCNGG 4 cut(s) 187, 525, 1209, 1348
BstSFI CTRYAG 3 cut(s) 664, 1077, 1221
BstV1I GCAGC 2 cut(s) 784, 1204
BstV2I GAAGAC 1 cut(s) 1359
BstX2I RGATCY 4 cut(s) 223, 853, 1168, 1192
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 4 cut(s) 223, 853, 1168, 1192
BsuRI GGCC 4 cut(s) 769, 935, 1075, 1124
BtsCI GGATG 7 cut(s) 521, 544, 592, 637, 799, 886, 1006
BtsIMutI CAGTG 2 cut(s) 846, 1375
BveI ACCTGC 1 cut(s) 1348
Cac8I GCNNGC 1 cut(s) 372
Cfr13I GGNCC 3 cut(s) 740, 933, 1122
CsiI ACCWGGT 1 cut(s) 1209
Csp6I GTAC 5 cut(s) 92, 322, 826, 1046, 1207
CviAII CATG 9 cut(s) 63, 115, 737, 749, 765, 821, 1119, 1126, 1174
CviQI GTAC 5 cut(s) 92, 322, 826, 1046, 1207
DdeI CTNAG 6 cut(s) 345, 352, 582, 1111, 1131, 1325
DpnI GATC 9 cut(s) 225, 754, 845, 855, 1147, 1170, 1178, 1194, 1374
DpnII GATC 9 cut(s) 223, 752, 843, 853, 1145, 1168, 1176, 1192, 1372
DraIII CACNNNGTG 2 cut(s) 275, 1165
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 969
Eco147I AGGCCT 1 cut(s) 1075
Eco24I GRGCYC 2 cut(s) 353, 532
Eco47I GGWCC 1 cut(s) 740
Eco53kI GAGCTC 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 986
EcoICRI GAGCTC 1 cut(s) 351
EcoRII CCWGG 3 cut(s) 187, 1209, 1348
EcoT14I CCWWGG 1 cut(s) 969
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 2 cut(s) 353, 532
ErhI CCWWGG 1 cut(s) 969
FaeI CATG 9 cut(s) 66, 118, 740, 752, 768, 824, 1122, 1129, 1177
FaqI GGGAC 2 cut(s) 1277, 1333
FatI CATG 9 cut(s) 62, 114, 736, 748, 764, 820, 1118, 1125, 1173
FauI CCCGC 1 cut(s) 108
FbaI TGATCA 2 cut(s) 1176, 1372
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 798, 1218
FokI GGATG 7 cut(s) 528, 551, 599, 624, 806, 893, 1013
FriOI GRGCYC 2 cut(s) 353, 532
Fsp4HI GCNGC 2 cut(s) 798, 1218
FspBI CTAG 4 cut(s) 371, 471, 1064, 1361
GluI GCNGC 2 cut(s) 798, 1218
GsuI CTGGAG 3 cut(s) 171, 822, 1332
HaeIII GGCC 4 cut(s) 769, 935, 1075, 1124
HapII CCGG 1 cut(s) 526
Hin1II CATG 9 cut(s) 66, 118, 740, 752, 768, 824, 1122, 1129, 1177
HincII GTYRAC 1 cut(s) 1011
HindII GTYRAC 1 cut(s) 1011
HindIII AAGCTT 4 cut(s) 5, 139, 956, 1151
HinfI GANTC 3 cut(s) 214, 680, 1364
HpaII CCGG 1 cut(s) 526
HphI GGTGA 2 cut(s) 138, 689
Hpy166II GTNNAC 3 cut(s) 49, 523, 1011
Hpy188I TCNGA 6 cut(s) 348, 355, 642, 858, 907, 1372
Hpy188III TCNNGA 4 cut(s) 482, 562, 791, 986
Hpy8I GTNNAC 3 cut(s) 49, 523, 1011
Hpy99I CGWCG 1 cut(s) 1277
HpyAV CCTTC 4 cut(s) 190, 203, 358, 1065
HpyCH4III ACNGT 3 cut(s) 88, 439, 575
HpyCH4IV ACGT 1 cut(s) 1275
HpyF10VI GCNNNNNNNGC 3 cut(s) 794, 932, 1223
HpyF3I CTNAG 6 cut(s) 345, 352, 582, 1111, 1131, 1325
HpySE526I ACGT 1 cut(s) 1275
Hsp92II CATG 9 cut(s) 66, 118, 740, 752, 768, 824, 1122, 1129, 1177
Ksp22I TGATCA 2 cut(s) 1176, 1372
Kzo9I GATC 9 cut(s) 223, 752, 843, 853, 1145, 1168, 1176, 1192, 1372
LmnI GCTCC 5 cut(s) 80, 127, 367, 988, 1054
Lsp1109I GCAGC 2 cut(s) 784, 1204
LweI GCATC 7 cut(s) 346, 506, 577, 646, 696, 784, 871
MabI ACCWGGT 1 cut(s) 1209
MaeI CTAG 4 cut(s) 371, 471, 1064, 1361
MaeII ACGT 1 cut(s) 1275
MaeIII GTNAC 8 cut(s) 256, 288, 433, 488, 677, 1114, 1253, 1330
MalI GATC 9 cut(s) 225, 754, 845, 855, 1147, 1170, 1178, 1194, 1374
MboI GATC 9 cut(s) 223, 752, 843, 853, 1145, 1168, 1176, 1192, 1372
MboII GAAGA 4 cut(s) 102, 119, 1080, 1359
MfeI CAATTG 2 cut(s) 159, 731
MflI RGATCY 4 cut(s) 223, 853, 1168, 1192
MhlI GDGCHC 2 cut(s) 353, 532
MlyI GAGTC 2 cut(s) 674, 1373
MmeI TCCRAC 2 cut(s) 58, 397
Mph1103I ATGCAT 1 cut(s) 711
MseI TTAA 3 cut(s) 333, 399, 761
MslI CAYNNNNRTG 3 cut(s) 295, 410, 763
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 1 cut(s) 526
MspR9I CCNGG 4 cut(s) 189, 527, 1211, 1350
MunI CAATTG 2 cut(s) 159, 731
Mva1269I GAATGC 1 cut(s) 1282
MvaI CCWGG 3 cut(s) 189, 1211, 1350
MwoI GCNNNNNNNGC 3 cut(s) 794, 932, 1223
NciI CCSGG 1 cut(s) 527
NdeII GATC 9 cut(s) 223, 752, 843, 853, 1145, 1168, 1176, 1192, 1372
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 9 cut(s) 66, 118, 740, 752, 768, 824, 1122, 1129, 1177
NlaIV GGNNCC 7 cut(s) 82, 225, 742, 934, 967, 1092, 1170
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 5 cut(s) 256, 288, 433, 677, 1114
NsiI ATGCAT 1 cut(s) 711
OliI CACNNNNGTG 1 cut(s) 295
PceI AGGCCT 1 cut(s) 1075
PctI GAATGC 1 cut(s) 1282
PfeI GAWTC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 1165
PfoI TCCNGGA 1 cut(s) 1348
PkrI GCNGC 2 cut(s) 799, 1219
PleI GAGTC 2 cut(s) 674, 1372
PpsI GAGTC 2 cut(s) 674, 1372
Psp124BI GAGCTC 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 187, 1209, 1348
PspGI CCWGG 3 cut(s) 187, 1209, 1348
PspN4I GGNNCC 7 cut(s) 82, 225, 742, 934, 967, 1092, 1170
PspPI GGNCC 3 cut(s) 740, 933, 1122
PsuI RGATCY 4 cut(s) 223, 853, 1168, 1192
RsaI GTAC 5 cut(s) 93, 323, 827, 1047, 1208
RsaNI GTAC 5 cut(s) 92, 322, 826, 1046, 1207
RseI CAYNNNNRTG 3 cut(s) 295, 410, 763
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 3 cut(s) 333, 399, 761
SatI GCNGC 2 cut(s) 798, 1218
Sau3AI GATC 9 cut(s) 223, 752, 843, 853, 1145, 1168, 1176, 1192, 1372
Sau96I GGNCC 3 cut(s) 740, 933, 1122
ScaI AGTACT 1 cut(s) 827
SchI GAGTC 2 cut(s) 674, 1373
ScrFI CCNGG 4 cut(s) 189, 527, 1211, 1350
SduI GDGCHC 2 cut(s) 353, 532
SexAI ACCWGGT 1 cut(s) 1209
SfaNI GCATC 7 cut(s) 346, 506, 577, 646, 696, 784, 871
SfcI CTRYAG 3 cut(s) 664, 1077, 1221
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 3 cut(s) 295, 410, 763
SmlI CTYRAG 2 cut(s) 332, 682
SmoI CTYRAG 2 cut(s) 332, 682
SseBI AGGCCT 1 cut(s) 1075
SsiI CCGC 4 cut(s) 101, 227, 557, 1258
SspI AATATT 1 cut(s) 871
SspMI CTAG 4 cut(s) 371, 471, 1064, 1361
SstI GAGCTC 1 cut(s) 353
StuI AGGCCT 1 cut(s) 1075
StyD4I CCNGG 4 cut(s) 187, 525, 1209, 1348
StyI CCWWGG 1 cut(s) 969
TaaI ACNGT 3 cut(s) 88, 439, 575
TaiI ACGT 1 cut(s) 1278
TaqI TCGA 1 cut(s) 1308
TaqII GACCGA 2 cut(s) 1028, 1158
TatI WGTACW 3 cut(s) 321, 825, 1045
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 3 cut(s) 333, 399, 761
Tru9I TTAA 3 cut(s) 333, 399, 761
TscAI CASTG 1 cut(s) 846
TseFI GTSAC 5 cut(s) 256, 288, 433, 677, 1114
TseI GCWGC 2 cut(s) 797, 1217
Tsp45I GTSAC 5 cut(s) 256, 288, 433, 677, 1114
TspDTI ATGAA 5 cut(s) 17, 156, 679, 714, 794
TspRI CASTG 1 cut(s) 846
Van91I CCANNNNNTGG 1 cut(s) 1165
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 4 cut(s) 25, 395, 599, 630
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 4 cut(s) 371, 471, 1064, 1361
ZrmI AGTACT 1 cut(s) 827
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.