Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003140

Physical Location & Seq

Genomic Coordinates Forward (+)

41629369 .. 41655255

Gene Structure 25887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCAGCAAATAAGCTTATGCATGCGGTTCAGTATGACAGTTATGGTGGAGGACCTTCTGGTTTAAAGCATGTTCAAGTTCCAATCCCATCTCCAAAGAAAAATGAGGTTTTGCTCAAGTTGGAAGCAGCAAGTCTAAATCCAGGTGATTGTAAGATTCAGAAAGGCATGGCGCGGCCTCTTTTCCCTCGCAAGTTGCCTCACATTCCTGTTACTGATGTGGCTGGAGAGGTTGTAGAAGTTGGAGAAGGAGTCACAAACTTCAAAGTGGGTGACAAAGTTGTGGCGATGCTCAGCTATGGTTACGGAGGTGGGTTGGCTGAGTTTGCTATCTCTAATAAGAGACTGATGGTTACTAGGCCACCTGAAGTTAGCGCAGCTGAAGGTGCAGGCTTACCTATTGCTGGTCTCACAGCTCACCAGGCTGTCACACAAGCTGCAGGGATCAAGCTCGATGGCACTGGTCAGAAGCAGAAGAACATATTGGTCACTGCGGCCTCTGGTGGAGTCGGTCACTACGCAGTCCAACTAGCAAAGCTTGGAAACACTCATGTTACCGCCACTTGTGGAGCTCGGAACATTGAATTGGTGAAGAGCTTAGGGGCAGATGAGGTTCTTGATTACAAGTCCCCTGAAGGGGCTGCTCTAAAGAGTCCATCTGGTCGGAAATATGATGCCGTGATCCACTGTGCAACTGGCATTCCTTGGTCTACTTTTGAGCCTAACTTGAGTGCAAAGGGGAAGGTCATAGACATTACTCCTGGTCCAAGTGCCTTCTCTACTTGTGTTCTGAAGATGCTAACTTTCTCCAAAAAGAAGTTGGTGCCACTTATGTTGTATCCCAAGACTAAGAACCTGGATTATCTTGTGAAGCTAGTGAAGGAAGAAAAGCTCAAGACGGTGATCGACTCGAGGCAACCTCTGAGCAAGGCTGAAGATGCTTGGGCTAAGAGTATTGATGGCCATGCAACTGGGAAGATCATTGTGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

331

Amino Acids

34.95

Weight (kDa)

9.37

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	34 - 119	9.8e-16	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	169 - 250	4.1e-10	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	200 - 329	1.3e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT4G32000 AT4G32000 AT4G32000 AT4G32000 AT5G11020 AT5G11020 AT5G11020 AT5G11020
fragaria_vesca	FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240
malus_domestica	MD08G1154200.v1.1 MD15G1131500.v1.1
prunus_persica	Prupe.1G486900_v2.0.a1 Prupe.1G486900_v2.0.a1
pyrus_communis	pycom08g13380 pycom15g11870
rosa_chinensis	RchiOBHm_Chr6g0297161
rosa_laevigata	RLG00000011626
rosa_multiflora	Rmu_sc0005385.1_g000026
rosa_roxburghii	Rroxscaffold_7G00170830
rosa_rugosa	Rorug06G0269300 Rorug06G0269400
rosa_samantha	Rh6AG380500
rosa_wichuraiana	Rw6G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	710
AccII	CGCG	1 cut(s)	175
AciI	CCGC	4 cut(s)	26, 175, 494, 558
AclWI	GGATC	2 cut(s)	452, 676
AcoI	YGGCCR	1 cut(s)	961
AcuI	CTGAAG	5 cut(s)	387, 402, 654, 812, 954
AfiI	CCNNNNNNNGG	3 cut(s)	404, 636, 637
AgsI	TTSAA	3 cut(s)	77, 265, 584
AjnI	CCWGG	4 cut(s)	142, 420, 760, 855
AjuI	GAANNNNNNNTTGG	4 cut(s)	467, 499, 569, 601
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	337, 413
AlwI	GGATC	2 cut(s)	452, 676
Ama87I	CYCGRG	1 cut(s)	910
AoxI	GGCC	4 cut(s)	176, 359, 495, 961
ApeKI	GCWGC	5 cut(s)	5, 128, 377, 437, 641
AspLEI	GCGC	2 cut(s)	175, 377
AspS9I	GGNCC	2 cut(s)	53, 764
AsuHPI	GGTGA	5 cut(s)	158, 284, 410, 601, 913
AvaI	CYCGRG	1 cut(s)	910
AvaII	GGWCC	2 cut(s)	53, 764
BalI	TGGCCA	1 cut(s)	963
BanI	GGYRCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	574
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	5 cut(s)	17, 140, 389, 424, 628
BccI	CCATC	5 cut(s)	97, 343, 449, 664, 953
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	4 cut(s)	144, 422, 762, 857
BciVI	GTATCC	1 cut(s)	849
BcoDI	GTCTC	2 cut(s)	337, 413
BfaI	CTAG	3 cut(s)	357, 530, 875
BfmI	CTRYAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	849
BisI	GCNGC	7 cut(s)	6, 129, 176, 378, 438, 495, 642
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	7 cut(s)	7, 130, 177, 379, 439, 496, 643
Bme1390I	CCNGG	4 cut(s)	144, 422, 762, 857
Bme18I	GGWCC	2 cut(s)	53, 764
BmeT110I	CYCGRG	1 cut(s)	910
BmgT120I	GGNCC	2 cut(s)	53, 764
BmiI	GGNNCC	2 cut(s)	825, 990
BmrFI	CCNGG	4 cut(s)	144, 422, 762, 857
BmrI	ACTGGG	1 cut(s)	981
BmsI	GCATC	4 cut(s)	279, 664, 786, 928
BmuI	ACTGGG	1 cut(s)	981
BplI	GAGNNNNNCTC	2 cut(s)	904, 936
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	598
Bpu1102I	GCTNAGC	1 cut(s)	293
BpuEI	CTTGAG	3 cut(s)	101, 748, 878
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	704
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 237, 249, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	404, 636, 637
Bse1I	ACTGG	3 cut(s)	466, 700, 976
BseBI	CCWGG	4 cut(s)	144, 422, 762, 857
BseDI	CCNNGG	1 cut(s)	704
BseLI	CCNNNNNNNGG	3 cut(s)	404, 636, 637
BseMII	CTCAG	3 cut(s)	307, 312, 914
BseNI	ACTGG	3 cut(s)	466, 700, 976
BseXI	GCAGC	5 cut(s)	17, 140, 389, 424, 628
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	4 cut(s)	178, 361, 497, 963
BshNI	GGYRCC	1 cut(s)	823
BsiHKAI	GWGCWC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	910
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	3 cut(s)	404, 636, 637
BsmAI	GTCTC	2 cut(s)	337, 413
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	4 cut(s)	178, 361, 497, 963
Bso31I	GGTCTC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	910
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	444, 681, 903, 978
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	4 cut(s)	26, 175, 494, 558
BspANI	GGCC	4 cut(s)	178, 361, 497, 963
BspCNI	CTCAG	3 cut(s)	306, 313, 915
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	825, 990
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	2 cut(s)	452, 676
BspQI	GCTCTTC	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	823
BspTNI	GGTCTC	1 cut(s)	413
BsrI	ACTGG	3 cut(s)	466, 700, 976
BssECI	CCNNGG	1 cut(s)	704
BssMI	GATC	4 cut(s)	444, 681, 903, 978
BssT1I	CCWWGG	1 cut(s)	704
Bst2UI	CCWGG	4 cut(s)	144, 422, 762, 857
Bst4CI	ACNGT	3 cut(s)	41, 689, 901
Bst6I	CTCTTC	1 cut(s)	587
BstC8I	GCNNGC	2 cut(s)	24, 391
BstDEI	CTNAG	6 cut(s)	293, 321, 598, 849, 923, 948
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	2 cut(s)	175, 377
BstKTI	GATC	4 cut(s)	447, 684, 906, 981
BstMAI	GTCTC	2 cut(s)	337, 413
BstMBI	GATC	4 cut(s)	444, 681, 903, 978
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 386, 422, 938
BstNI	CCWGG	4 cut(s)	144, 422, 762, 857
BstNSI	RCATGY	2 cut(s)	26, 74
BstSCI	CCNGG	4 cut(s)	142, 420, 760, 855
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	5 cut(s)	17, 140, 389, 424, 628
BstXI	CCANNNNNNTGG	1 cut(s)	971
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	4 cut(s)	178, 361, 497, 963
BtgZI	GCGATG	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	459, 489, 685
Cac8I	GCNNGC	2 cut(s)	24, 391
CfoI	GCGC	2 cut(s)	175, 377
Cfr13I	GGNCC	2 cut(s)	53, 764
CspCI	CAANNNNNGTGG	2 cut(s)	816, 851
CviAII	CATG	5 cut(s)	23, 71, 169, 551, 965
DdeI	CTNAG	6 cut(s)	293, 321, 598, 849, 923, 948
DpnI	GATC	4 cut(s)	446, 683, 905, 980
DpnII	GATC	4 cut(s)	444, 681, 903, 978
DraI	TTTAAA	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	961
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	572
Eco130I	CCWWGG	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	53, 764
Eco53kI	GAGCTC	1 cut(s)	572
Eco57I	CTGAAG	5 cut(s)	387, 402, 654, 812, 954
Eco88I	CYCGRG	1 cut(s)	910
EcoICRI	GAGCTC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	4 cut(s)	142, 420, 760, 855
EcoT14I	CCWWGG	1 cut(s)	704
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	704
FaeI	CATG	5 cut(s)	26, 74, 172, 554, 968
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	5 cut(s)	22, 70, 168, 550, 964
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	7 cut(s)	6, 129, 176, 378, 438, 495, 642
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	7 cut(s)	6, 129, 176, 378, 438, 495, 642
FspBI	CTAG	3 cut(s)	357, 530, 875
GlaI	GCGC	2 cut(s)	174, 376
GluI	GCNGC	7 cut(s)	6, 129, 176, 378, 438, 495, 642
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	4 cut(s)	178, 361, 497, 963
HhaI	GCGC	2 cut(s)	175, 377
Hin1II	CATG	5 cut(s)	26, 74, 172, 554, 968
Hin6I	GCGC	2 cut(s)	173, 375
HinP1I	GCGC	2 cut(s)	173, 375
HindIII	AAGCTT	2 cut(s)	14, 536
HinfI	GANTC	5 cut(s)	157, 252, 507, 652, 908
HphI	GGTGA	5 cut(s)	158, 284, 410, 601, 913
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	6 cut(s)	162, 468, 576, 666, 792, 924
Hpy188III	TCNNGA	2 cut(s)	617, 895
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	7 cut(s)	66, 242, 377, 629, 736, 784, 874
HpyCH4III	ACNGT	3 cut(s)	41, 689, 901
HpyCH4V	TGCA	6 cut(s)	22, 389, 440, 692, 734, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 386, 422, 938
HpyF3I	CTNAG	6 cut(s)	293, 321, 598, 849, 923, 948
Hsp92II	CATG	5 cut(s)	26, 74, 172, 554, 968
HspAI	GCGC	2 cut(s)	173, 375
Kzo9I	GATC	4 cut(s)	444, 681, 903, 978
LguI	GCTCTTC	1 cut(s)	587
LmnI	GCTCC	2 cut(s)	569, 988
Lsp1109I	GCAGC	5 cut(s)	17, 140, 389, 424, 628
LweI	GCATC	4 cut(s)	279, 664, 786, 928
MaeI	CTAG	3 cut(s)	357, 530, 875
MaeIII	GTNAC	9 cut(s)	211, 253, 272, 302, 352, 427, 487, 512, 553
MalI	GATC	4 cut(s)	446, 683, 905, 980
MboI	GATC	4 cut(s)	444, 681, 903, 978
MboII	GAAGA	6 cut(s)	487, 604, 805, 896, 947, 988
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	1 cut(s)	963
MluCI	AATT	1 cut(s)	584
MluNI	TGGCCA	1 cut(s)	963
MlyI	GAGTC	4 cut(s)	261, 516, 661, 902
MmeI	TCCRAC	4 cut(s)	102, 223, 550, 644
Mox20I	TGGCCA	1 cut(s)	963
Mph1103I	ATGCAT	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	963
MseI	TTAA	2 cut(s)	65, 994
Msp20I	TGGCCA	1 cut(s)	963
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	4 cut(s)	144, 422, 762, 857
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	4 cut(s)	144, 422, 762, 857
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	4 cut(s)	326, 386, 422, 938
NdeII	GATC	4 cut(s)	444, 681, 903, 978
NlaIII	CATG	5 cut(s)	26, 74, 172, 554, 968
NlaIV	GGNNCC	2 cut(s)	825, 990
NmuCI	GTSAC	5 cut(s)	253, 272, 427, 487, 512
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	2 cut(s)	26, 74
PaeI	GCATGC	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	910
PciSI	GCTCTTC	1 cut(s)	587
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	7 cut(s)	7, 130, 177, 379, 439, 496, 643
PleI	GAGTC	4 cut(s)	260, 515, 660, 902
PpsI	GAGTC	4 cut(s)	260, 515, 660, 902
PpuMI	RGGWCCY	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	4 cut(s)	142, 420, 760, 855
PspGI	CCWGG	4 cut(s)	142, 420, 760, 855
PspN4I	GGNNCC	2 cut(s)	825, 990
PspPI	GGNCC	2 cut(s)	53, 764
PspPPI	RGGWCCY	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	910
PstI	CTGCAG	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	574
SapI	GCTCTTC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	65, 994
SatI	GCNGC	7 cut(s)	6, 129, 176, 378, 438, 495, 642
Sau3AI	GATC	4 cut(s)	444, 681, 903, 978
Sau96I	GGNCC	2 cut(s)	53, 764
SchI	GAGTC	4 cut(s)	261, 516, 661, 902
ScrFI	CCNGG	4 cut(s)	144, 422, 762, 857
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	4 cut(s)	279, 664, 786, 928
SfcI	CTRYAG	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	910
SinI	GGWCC	2 cut(s)	53, 764
SlaI	CTCGAG	1 cut(s)	910
SmlI	CTYRAG	4 cut(s)	116, 727, 893, 910
SmoI	CTYRAG	4 cut(s)	116, 727, 893, 910
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	584
SsiI	CCGC	4 cut(s)	26, 175, 494, 558
SspMI	CTAG	3 cut(s)	357, 530, 875
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	4 cut(s)	142, 420, 760, 855
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	3 cut(s)	41, 689, 901
TaqI	TCGA	3 cut(s)	453, 906, 911
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	1 cut(s)	584
TauI	GCSGC	2 cut(s)	178, 497
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	2 cut(s)	65, 994
Tru9I	TTAA	2 cut(s)	65, 994
TscAI	CASTG	3 cut(s)	466, 496, 692
TseFI	GTSAC	5 cut(s)	253, 272, 427, 487, 512
TseI	GCWGC	5 cut(s)	5, 128, 377, 437, 641
Tsp45I	GTSAC	5 cut(s)	253, 272, 427, 487, 512
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	3 cut(s)	466, 496, 692
VpaK11BI	GGWCC	2 cut(s)	53, 764
XceI	RCATGY	2 cut(s)	26, 74
XcmI	CCANNNNNNNNNTGG	2 cut(s)	692, 817
XhoI	CTCGAG	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	710
XspI	CTAG	3 cut(s)	357, 530, 875
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.