RchiOBHm_Chr6g0297161

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
58927541 .. 58931324
3784 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26670

Sequence Viewer

Length: 1383 bp
ATGAAGCTTTTTTTTGTTGTTGTTGTAAATTTTGTTGCTTTTGTGCTTGTAGACCAAAACAAGCCATGCCCTTTTTGTGTTGGAGCCACAGTTGTACCTGACCCGCTTGTTTCTTCCATGTCTGCTCCTCTTCCCCCACCAAGCTTCTCACCCACTTCCCCAATTGCTTCATCAATGGCTTCCTTCTCTCCAGGAATTCAACAAGGAAGTGAAGGGAATCAAATGGATCGGCATAAGAAGCCGCTCATTGCCCTCATTGTGACTTGTGCAACACTTGGTGCAGTTTTGTTGTCACTATTGTGTTTGTGGTTTTATCACAGGAAGTACAAGTTCCTTAAGAGAAATGCTCAGAGCTCAGATGCCGAGAAGGAGCTGGCATTGTCTCCATTTTTCGGTAAATTCAATTCCATAAAGATGGTTGGAAACAAAGGGTCTGTGACAGTAATTGAGTATAAGCTAATAGAAAAGGGCACTAGCAATTTTCGGGAGAGTAATATCTTGGGCGAGGGTGGATTTGGATGCGTTTACCAGGCTCGTTTGGATGATAGTTTGATTGTTGCTGTCAAGAAACTGGACTGTGCAACTGAGGATGCTGAAAAAGAATTTGAGAATGAGGTGGAGTTATTACATAAAATTCAGCATCCGAATATAATTTCTTTTTTGGGCTGTAGTAATGATGGTGACTCAAGGTTCATTGTTTACGAATTGATGCATAATGGTTCTGTGGAAACTCAATTGCATGGACCCTCTCATGGATCGGCATTAACATGGCCTATGCGAATGAAAATCGCTTTGGATGCTGCAAGAGGATTAGAGTATTTGCATGAGTACTGCAACCCTCCAGTGATCCATAGAGATCTGAAAACATCTAATATTCTTTTGGATGCCAACTTCAATGCCAAGCTCTCTGATTTTGGTCTTGCTGTGGCTGATGGGGCCAAAAACAATAATAACATCAAGCTTTCTGGCACCTTGGGTTATGTTGCTCCCGAGTATCTTTTGGATGGTAAGTTGACGGACAAGAGTGATGTCTATGCTTTTGGAGTTGTACTTTTGGAGCTTCTACTAGGAAGAAGGCCTGTAGAAAAACTGGCACCAACTCAATGCCAATCCTTAGTCACATGGGCCATGCCTCAGCTTACTGACCGATCAAAGCTTCCCCACATTGTGGATCCCATGATCAAAGATACAATGGATCTAAAGCACTTGTACCAGGTTGCTGCTGTAGCTGTGTTATGTGTGCAACCCGAACCAAGTTACCGCCCACTAATAACAGATGTTTTGCATTCCCTTGTCCCTCTCGTTCCTGTCGAGCTCGGAGGGACACTTAGAGTTACACAAGCTGCACCTCCAGGAAACCCCCAAGAGTCTTCTGATCACTGA

Protein Analysis

460

Amino Acids

50.4

Weight (kDa)

6.24

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 162 - 380 2.3e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 165 - 396 5.4e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 968, 1093
AccB7I CCANNNNNTGG 1 cut(s) 1168
AccBSI CCGCTC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 51
AciI CCGC 3 cut(s) 104, 242, 1261
AclWI GGATC 6 cut(s) 234, 763, 841, 1166, 1179, 1203
AcsI RAATTY 5 cut(s) 28, 195, 398, 602, 633
AdeI CACNNNGTG 2 cut(s) 278, 1168
AfaI GTAC 5 cut(s) 96, 326, 830, 1050, 1211
AfiI CCNNNNNNNGG 3 cut(s) 392, 752, 1168
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 3 cut(s) 200, 403, 895
AjnI CCWGG 4 cut(s) 190, 528, 1212, 1351
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AleI CACNNNNGTG 1 cut(s) 298
Alw21I GWGCWC 2 cut(s) 356, 1317
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 6 cut(s) 234, 763, 841, 1166, 1179, 1203
Ama87I CYCGRG 1 cut(s) 989
AoxI GGCC 4 cut(s) 770, 936, 1076, 1125
ApeKI GCWGC 3 cut(s) 800, 1220, 1343
ApoI RAATTY 5 cut(s) 28, 195, 398, 602, 633
AspS9I GGNCC 3 cut(s) 743, 936, 1125
AsuHPI GGTGA 2 cut(s) 141, 692
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 473
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BamHI GGATCC 1 cut(s) 1171
BanI GGYRCC 2 cut(s) 968, 1093
BanII GRGCYC 2 cut(s) 356, 1317
BbsI GAAGAC 1 cut(s) 1362
Bbv12I GWGCWC 2 cut(s) 356, 1317
BbvCI CCTCAGC 1 cut(s) 1134
BbvI GCAGC 3 cut(s) 787, 1207, 1330
BccI CCATC 4 cut(s) 409, 671, 926, 998
BciT130I CCWGG 4 cut(s) 192, 530, 1214, 1353
BclI TGATCA 2 cut(s) 1179, 1375
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 2 cut(s) 474, 1067
BfmI CTRYAG 3 cut(s) 667, 1080, 1224
BfrI CTTAAG 1 cut(s) 335
BglII AGATCT 1 cut(s) 856
BisI GCNGC 4 cut(s) 242, 801, 1221, 1344
BlsI GCNGC 4 cut(s) 243, 802, 1222, 1345
BmcAI AGTACT 1 cut(s) 830
Bme1390I CCNGG 4 cut(s) 192, 530, 1214, 1353
Bme18I GGWCC 1 cut(s) 743
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 3 cut(s) 743, 936, 1125
BmiI GGNNCC 6 cut(s) 85, 745, 937, 970, 1095, 1173
BmrFI CCNGG 4 cut(s) 192, 530, 1214, 1353
BmsI GCATC 7 cut(s) 349, 509, 580, 649, 699, 787, 874
BpiI GAAGAC 1 cut(s) 1362
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpmI CTGGAG 3 cut(s) 174, 825, 1335
Bpu10I CCTNAGC 1 cut(s) 1134
BpuEI CTTGAG 1 cut(s) 670
BsaJI CCNNGG 1 cut(s) 972
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 752, 1168
Bse1I ACTGG 3 cut(s) 576, 842, 1095
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 4 cut(s) 192, 530, 1214, 1353
BseDI CCNNGG 1 cut(s) 972
BseGI GGATG 7 cut(s) 524, 547, 595, 640, 802, 889, 1009
BseLI CCNNNNNNNGG 3 cut(s) 392, 752, 1168
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 4 cut(s) 362, 369, 576, 1148
BseNI ACTGG 3 cut(s) 576, 842, 1095
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 3 cut(s) 787, 1207, 1330
BsgI GTGCAG 2 cut(s) 300, 1329
BshFI GGCC 4 cut(s) 772, 938, 1078, 1127
BshNI GGYRCC 2 cut(s) 968, 1093
BsiHKAI GWGCWC 2 cut(s) 356, 1317
BsiHKCI CYCGRG 1 cut(s) 989
BslFI GGGAC 2 cut(s) 1280, 1336
BslI CCNNNNNNNGG 3 cut(s) 392, 752, 1168
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 2 cut(s) 1280, 1336
BsmI GAATGC 1 cut(s) 1285
BsnI GGCC 4 cut(s) 772, 938, 1078, 1127
BsoBI CYCGRG 1 cut(s) 989
Bsp1286I GDGCHC 3 cut(s) 356, 473, 1317
Bsp143I GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
BspACI CCGC 3 cut(s) 104, 242, 1261
BspANI GGCC 4 cut(s) 772, 938, 1078, 1127
BspCNI CTCAG 4 cut(s) 361, 368, 577, 1147
BspLI GGNNCC 6 cut(s) 85, 745, 937, 970, 1095, 1173
BspPI GGATC 6 cut(s) 234, 763, 841, 1166, 1179, 1203
BspT107I GGYRCC 2 cut(s) 968, 1093
BspTI CTTAAG 1 cut(s) 335
BsrBI CCGCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 3 cut(s) 576, 842, 1095
BssECI CCNNGG 1 cut(s) 972
BssMI GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
BssT1I CCWWGG 1 cut(s) 972
Bst2UI CCWGG 4 cut(s) 192, 530, 1214, 1353
Bst4CI ACNGT 3 cut(s) 91, 442, 578
Bst6I CTCTTC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 6 cut(s) 348, 355, 585, 1114, 1134, 1328
BstF5I GGATG 7 cut(s) 524, 547, 595, 640, 802, 889, 1009
BstKTI GATC 9 cut(s) 229, 758, 849, 859, 1151, 1174, 1182, 1198, 1378
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
BstMWI GCNNNNNNNGC 4 cut(s) 238, 797, 935, 1226
BstNI CCWGG 4 cut(s) 192, 530, 1214, 1353
BstSCI CCNGG 4 cut(s) 190, 528, 1212, 1351
BstSFI CTRYAG 3 cut(s) 667, 1080, 1224
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 3 cut(s) 787, 1207, 1330
BstV2I GAAGAC 1 cut(s) 1362
BstX2I RGATCY 3 cut(s) 856, 1171, 1195
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 3 cut(s) 856, 1171, 1195
BsuRI GGCC 4 cut(s) 772, 938, 1078, 1127
BtsCI GGATG 7 cut(s) 524, 547, 595, 640, 802, 889, 1009
BtsIMutI CAGTG 2 cut(s) 849, 1378
Cac8I GCNNGC 1 cut(s) 375
Cfr13I GGNCC 3 cut(s) 743, 936, 1125
CsiI ACCWGGT 1 cut(s) 1212
Csp6I GTAC 5 cut(s) 95, 325, 829, 1049, 1210
CviAII CATG 9 cut(s) 66, 118, 740, 752, 768, 824, 1122, 1129, 1177
CviQI GTAC 5 cut(s) 95, 325, 829, 1049, 1210
DdeI CTNAG 6 cut(s) 348, 355, 585, 1114, 1134, 1328
DpnI GATC 9 cut(s) 228, 757, 848, 858, 1150, 1173, 1181, 1197, 1377
DpnII GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
DraIII CACNNNGTG 2 cut(s) 278, 1168
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Ecl136II GAGCTC 2 cut(s) 354, 1315
Eco130I CCWWGG 1 cut(s) 972
Eco147I AGGCCT 1 cut(s) 1078
Eco24I GRGCYC 2 cut(s) 356, 1317
Eco47I GGWCC 1 cut(s) 743
Eco53kI GAGCTC 2 cut(s) 354, 1315
Eco88I CYCGRG 1 cut(s) 989
EcoICRI GAGCTC 2 cut(s) 354, 1315
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 4 cut(s) 190, 528, 1212, 1351
EcoT14I CCWWGG 1 cut(s) 972
EcoT22I ATGCAT 1 cut(s) 714
EcoT38I GRGCYC 2 cut(s) 356, 1317
ErhI CCWWGG 1 cut(s) 972
FaeI CATG 9 cut(s) 69, 121, 743, 755, 771, 827, 1125, 1132, 1180
FaqI GGGAC 2 cut(s) 1280, 1336
FatI CATG 9 cut(s) 65, 117, 739, 751, 767, 823, 1121, 1128, 1176
FauI CCCGC 1 cut(s) 111
FbaI TGATCA 2 cut(s) 1179, 1375
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 242, 801, 1221, 1344
FokI GGATG 7 cut(s) 531, 554, 602, 627, 809, 896, 1016
FriOI GRGCYC 2 cut(s) 356, 1317
Fsp4HI GCNGC 4 cut(s) 242, 801, 1221, 1344
FspBI CTAG 2 cut(s) 474, 1067
GluI GCNGC 4 cut(s) 242, 801, 1221, 1344
GsuI CTGGAG 3 cut(s) 174, 825, 1335
HaeIII GGCC 4 cut(s) 772, 938, 1078, 1127
Hin1II CATG 9 cut(s) 69, 121, 743, 755, 771, 827, 1125, 1132, 1180
HincII GTYRAC 1 cut(s) 1014
HindII GTYRAC 1 cut(s) 1014
HindIII AAGCTT 4 cut(s) 5, 142, 959, 1154
HinfI GANTC 3 cut(s) 217, 683, 1367
HphI GGTGA 2 cut(s) 141, 692
Hpy166II GTNNAC 4 cut(s) 52, 526, 700, 1014
Hpy188I TCNGA 7 cut(s) 351, 358, 645, 861, 910, 1319, 1375
Hpy188III TCNNGA 3 cut(s) 485, 565, 989
Hpy8I GTNNAC 4 cut(s) 52, 526, 700, 1014
HpyAV CCTTC 4 cut(s) 193, 206, 361, 1068
HpyCH4III ACNGT 3 cut(s) 91, 442, 578
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 797, 935, 1226
HpyF3I CTNAG 6 cut(s) 348, 355, 585, 1114, 1134, 1328
Hsp92II CATG 9 cut(s) 69, 121, 743, 755, 771, 827, 1125, 1132, 1180
Ksp22I TGATCA 2 cut(s) 1179, 1375
Kzo9I GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
LmnI GCTCC 5 cut(s) 83, 130, 370, 991, 1057
Lsp1109I GCAGC 3 cut(s) 787, 1207, 1330
LweI GCATC 7 cut(s) 349, 509, 580, 649, 699, 787, 874
MabI ACCWGGT 1 cut(s) 1212
MaeI CTAG 2 cut(s) 474, 1067
MaeIII GTNAC 7 cut(s) 259, 291, 436, 680, 1117, 1256, 1333
MalI GATC 9 cut(s) 228, 757, 848, 858, 1150, 1173, 1181, 1197, 1377
MbiI CCGCTC 1 cut(s) 244
MboI GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
MboII GAAGA 4 cut(s) 105, 122, 1083, 1362
MfeI CAATTG 2 cut(s) 162, 734
MflI RGATCY 3 cut(s) 856, 1171, 1195
MhlI GDGCHC 3 cut(s) 356, 473, 1317
MlyI GAGTC 2 cut(s) 677, 1376
MmeI TCCRAC 2 cut(s) 61, 400
Mph1103I ATGCAT 1 cut(s) 714
MseI TTAA 2 cut(s) 336, 764
MslI CAYNNNNRTG 3 cut(s) 298, 413, 766
MspCI CTTAAG 1 cut(s) 335
MspR9I CCNGG 4 cut(s) 192, 530, 1214, 1353
MunI CAATTG 2 cut(s) 162, 734
Mva1269I GAATGC 1 cut(s) 1285
MvaI CCWGG 4 cut(s) 192, 530, 1214, 1353
MwoI GCNNNNNNNGC 4 cut(s) 238, 797, 935, 1226
NdeII GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
NlaIII CATG 9 cut(s) 69, 121, 743, 755, 771, 827, 1125, 1132, 1180
NlaIV GGNNCC 6 cut(s) 85, 745, 937, 970, 1095, 1173
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 5 cut(s) 259, 291, 436, 680, 1117
NsiI ATGCAT 1 cut(s) 714
OliI CACNNNNGTG 1 cut(s) 298
PceI AGGCCT 1 cut(s) 1078
PcsI WCGNNNNNNNCGW 1 cut(s) 1308
PctI GAATGC 1 cut(s) 1285
PfeI GAWTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 1168
PfoI TCCNGGA 2 cut(s) 190, 1351
PkrI GCNGC 4 cut(s) 243, 802, 1222, 1345
PleI GAGTC 2 cut(s) 677, 1375
PpsI GAGTC 2 cut(s) 677, 1375
Psp124BI GAGCTC 2 cut(s) 356, 1317
Psp6I CCWGG 4 cut(s) 190, 528, 1212, 1351
PspGI CCWGG 4 cut(s) 190, 528, 1212, 1351
PspN4I GGNNCC 6 cut(s) 85, 745, 937, 970, 1095, 1173
PspPI GGNCC 3 cut(s) 743, 936, 1125
PsuI RGATCY 3 cut(s) 856, 1171, 1195
RsaI GTAC 5 cut(s) 96, 326, 830, 1050, 1211
RsaNI GTAC 5 cut(s) 95, 325, 829, 1049, 1210
RseI CAYNNNNRTG 3 cut(s) 298, 413, 766
SacI GAGCTC 2 cut(s) 356, 1317
SaqAI TTAA 2 cut(s) 336, 764
SatI GCNGC 4 cut(s) 242, 801, 1221, 1344
Sau3AI GATC 9 cut(s) 226, 755, 846, 856, 1148, 1171, 1179, 1195, 1375
Sau96I GGNCC 3 cut(s) 743, 936, 1125
ScaI AGTACT 1 cut(s) 830
SchI GAGTC 2 cut(s) 677, 1376
ScrFI CCNGG 4 cut(s) 192, 530, 1214, 1353
SduI GDGCHC 3 cut(s) 356, 473, 1317
SexAI ACCWGGT 1 cut(s) 1212
SfaNI GCATC 7 cut(s) 349, 509, 580, 649, 699, 787, 874
SfcI CTRYAG 3 cut(s) 667, 1080, 1224
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 3 cut(s) 298, 413, 766
SmlI CTYRAG 2 cut(s) 335, 685
SmoI CTYRAG 2 cut(s) 335, 685
SseBI AGGCCT 1 cut(s) 1078
SsiI CCGC 3 cut(s) 104, 242, 1261
SspI AATATT 1 cut(s) 874
SspMI CTAG 2 cut(s) 474, 1067
SstI GAGCTC 2 cut(s) 356, 1317
StuI AGGCCT 1 cut(s) 1078
StyD4I CCNGG 4 cut(s) 190, 528, 1212, 1351
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 3 cut(s) 91, 442, 578
TaqI TCGA 1 cut(s) 1311
TaqII GACCGA 1 cut(s) 1161
TatI WGTACW 3 cut(s) 324, 828, 1048
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 336, 764
Tru9I TTAA 2 cut(s) 336, 764
TscAI CASTG 1 cut(s) 849
TseFI GTSAC 5 cut(s) 259, 291, 436, 680, 1117
TseI GCWGC 3 cut(s) 800, 1220, 1343
Tsp45I GTSAC 5 cut(s) 259, 291, 436, 680, 1117
TspDTI ATGAA 4 cut(s) 17, 159, 682, 797
TspGWI ACGGA 1 cut(s) 1031
TspRI CASTG 1 cut(s) 849
Van91I CCANNNNNTGG 1 cut(s) 1168
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 5 cut(s) 28, 195, 398, 602, 633
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 2 cut(s) 474, 1067
ZrmI AGTACT 1 cut(s) 830
Zsp2I ATGCAT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.