Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003140

Physical Location & Seq

Genomic Coordinates Reverse (-)

3486242 .. 3489316

Gene Structure 3075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAAGCAAATTGTTATAACAGCTCTTGTTTTACTACAAGCTTATGTTCTTCATCAATCCACATGTGTTATGTCCCTTACTACACAAGAATCTCCTTCTCCTCAACCTTCTGCTTTCACTCCCGCCTTATCTCCTGATTATCAACAGAGAGAGAAGGAATTGCATAAACAAGAGAGTAACAACATGAGACTGGTTATTTCACTAGCAGCTACATTTTCCTTAGTTGGTATAATCTTACTTTGCTCTCTGCTTTATTGGTTTTGCCATAGGAGAAGAAACCTCAAGAGCTCAGGTTGTGGGTGTAGTGGAATCACATTCTTGAATCGGTTTAGTCGCTCAAAAACATTAGACAAGAGAACTACAAAGCAGGGAACAGTGTCATTGATCGATTACAATATACTAGAAGAAGGAACTAGTGGTTTCAAGGAGAGTAACATTTTGGGTCAAGGTGGATTTGGATGTGTATATTCTGCCACATTAGAGAACAACATTTCAGCTGCGGTTAAGAAGCTAGACTGTGCCAATGAAGATGCAGCAAAGGAATTTAAGAGTGAGGTTGAGATATTGAGTAAGCTCCAGCACCCGAATATAATATCCCTTTTGGGTTATAGCACGAATGATACTGCGAGATTCATTGTCTATGAGCTGATGCCAAACGTTTCTCTGGAATCTCATTTACACGGATCTTCTCAGGGTTCGGCGATCACATGGCCTATGAGGATGAAGATTGCTCTTGATGTAACAAGGGGATTAGAATATTTGCATGAACATTGTCATCCAGCAATCATTCACAGGGACTTGAAATCATCCAACATCTTATTAGATAGCAATTTCAATGCTAAGATTTCAGATTTTGGTCTAGCTGTTGTTGATGGGCCAAAGAACAAGAACCATAAACTTTCCGGGACAGTTGGCTACGTTGCACCAGAGTATCTTCTCAACGGCCAATTGACAGAAAAGAGCGACGTGTATGCTTTTGGAGTAGTGTTATTAGAGCTTTTACTCGGGAAAAAACCTGTGGAGAAACTAGCTCCCGGTGAATGCCAATCCATCATCACTTGGGCAATGCCTTATCTCACTGATAGAACCAAGTTACCAAGCGTCATAGATCCTGCGATTAAAGATACGATGGACTTGAAACACCTTTACCAGGTAGCGGCAGTGGCGATTTTGTGCGTGCAGCCAGAACCGAGTTATAGACCGTTGATTACAGACGTCTTGCATTCTCTTATACCTTTGGTTCCAATGGAACTTGGTGGAACCTTAAAAACCATCAAATGTGCTTCAATGGATCACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

433

Amino Acids

47.81

Weight (kDa)

7.57

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	108 - 313	4.1e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	110 - 318	2.4e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT2G25220 AT4G32000 AT4G32000 AT4G32000 AT4G32000 AT5G11020 AT5G11020 AT5G11020 AT5G11020
fragaria_vesca	FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240 FvH4_2g28240
malus_domestica	MD08G1154200.v1.1 MD15G1131500.v1.1
prunus_persica	Prupe.1G486900_v2.0.a1 Prupe.1G486900_v2.0.a1
pyrus_communis	pycom08g13380 pycom15g11870
rosa_chinensis	RchiOBHm_Chr6g0297161
rosa_laevigata	RLG00000011626
rosa_multiflora	Rmu_sc0005385.1_g000026
rosa_roxburghii	Rroxscaffold_7G00170830
rosa_rugosa	Rorug06G0269300 Rorug06G0269400
rosa_samantha	Rh6AG380500
rosa_wichuraiana	Rw6G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AatII	GACGTC	1 cut(s)	1218
AciI	CCGC	3 cut(s)	123, 500, 1157
AclI	AACGTT	1 cut(s)	657
AclWI	GGATC	3 cut(s)	691, 1103, 1299
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	1215
AfiI	CCNNNNNNNGG	2 cut(s)	1150, 1156
AflIII	ACRYGT	2 cut(s)	62, 966
AgsI	TTSAA	6 cut(s)	322, 424, 802, 835, 1138, 1287
AhlI	ACTAGT	1 cut(s)	413
AjiI	CACGTC	1 cut(s)	967
AjnI	CCWGG	1 cut(s)	1149
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	3 cut(s)	691, 1103, 1299
Ama87I	CYCGRG	1 cut(s)	1004
AoxI	GGCC	3 cut(s)	710, 875, 943
ApeKI	GCWGC	4 cut(s)	206, 497, 533, 1180
ApoI	RAATTY	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	875
AsuC2I	CCSGG	2 cut(s)	904, 1035
AsuHPI	GGTGA	1 cut(s)	1049
AvaI	CYCGRG	1 cut(s)	1004
BaeI	ACNNNNGTAYC	2 cut(s)	914, 947
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	218, 484, 545, 1192
BccI	CCATC	4 cut(s)	866, 1058, 1123, 1280
BceAI	ACGGC	1 cut(s)	958
BcgI	CGANNNNNNTGC	2 cut(s)	953, 987
BciT130I	CCWGG	1 cut(s)	1151
BcnI	CCSGG	2 cut(s)	904, 1035
BcoDI	GTCTC	1 cut(s)	181
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	6 cut(s)	203, 401, 414, 512, 860, 1028
BisI	GCNGC	5 cut(s)	207, 498, 534, 1158, 1181
BlsI	GCNGC	5 cut(s)	208, 499, 535, 1159, 1182
Bme1390I	CCNGG	3 cut(s)	904, 1035, 1151
BmeT110I	CYCGRG	1 cut(s)	1004
BmgBI	CACGTC	1 cut(s)	967
BmgT120I	GGNCC	1 cut(s)	875
BmiI	GGNNCC	2 cut(s)	1242, 1261
BmrFI	CCNGG	3 cut(s)	904, 1035, 1151
BmsI	GCATC	2 cut(s)	520, 639
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	2 cut(s)	904, 1035
Bsa29I	ATCGAT	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	1215
Bsc4I	CCNNNNNNNGG	2 cut(s)	1150, 1156
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	1071
BseBI	CCWGG	1 cut(s)	1151
BseCI	ATCGAT	1 cut(s)	387
BseGI	GGATG	4 cut(s)	464, 726, 775, 806
BseLI	CCNNNNNNNGG	2 cut(s)	1150, 1156
BseMI	GCAATG	1 cut(s)	1071
BseMII	CTCAG	2 cut(s)	303, 704
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	4 cut(s)	218, 484, 545, 1192
BsgI	GTGCAG	1 cut(s)	1199
BshFI	GGCC	3 cut(s)	712, 877, 945
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	2 cut(s)	903, 1035
BslFI	GGGAC	3 cut(s)	58, 809, 919
BslI	CCNNNNNNNGG	2 cut(s)	1150, 1156
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	3 cut(s)	58, 809, 919
BsmI	GAATGC	2 cut(s)	1046, 1222
BsnI	GGCC	3 cut(s)	712, 877, 945
BsoBI	CYCGRG	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	5 cut(s)	384, 683, 702, 1108, 1291
BspACI	CCGC	3 cut(s)	123, 500, 1157
BspANI	GGCC	3 cut(s)	712, 877, 945
BspCNI	CTCAG	2 cut(s)	302, 703
BspDI	ATCGAT	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	1242, 1261
BspPI	GGATC	3 cut(s)	691, 1103, 1299
BsrDI	GCAATG	1 cut(s)	1071
BsrI	ACTGG	1 cut(s)	195
BssMI	GATC	5 cut(s)	384, 683, 702, 1108, 1291
BssNI	GRCGYC	1 cut(s)	1215
Bst2UI	CCWGG	1 cut(s)	1151
Bst4CI	ACNGT	5 cut(s)	376, 518, 910, 1203, 1298
BstACI	GRCGYC	1 cut(s)	1215
BstC8I	GCNNGC	1 cut(s)	1178
BstDEI	CTNAG	4 cut(s)	220, 289, 690, 840
BstENI	CCTNNNNNAGG	1 cut(s)	1148
BstF5I	GGATG	4 cut(s)	464, 726, 775, 806
BstKTI	GATC	5 cut(s)	387, 686, 705, 1111, 1294
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	5 cut(s)	384, 683, 702, 1108, 1291
BstMWI	GCNNNNNNNGC	1 cut(s)	1163
BstNI	CCWGG	1 cut(s)	1151
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	3 cut(s)	902, 1033, 1149
BstV1I	GCAGC	4 cut(s)	218, 484, 545, 1192
BstX2I	RGATCY	2 cut(s)	683, 1108
BstYI	RGATCY	2 cut(s)	683, 1108
Bsu15I	ATCGAT	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	712, 877, 945
BsuTUI	ATCGAT	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	967
BtsCI	GGATG	4 cut(s)	464, 726, 775, 806
BtsI	GCAGTG	1 cut(s)	1167
BtsIMutI	CAGTG	4 cut(s)	381, 1077, 1167, 1294
Cac8I	GCNNGC	1 cut(s)	1178
Cfr13I	GGNCC	1 cut(s)	875
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	1090
CsiI	ACCWGGT	1 cut(s)	1149
CviAII	CATG	4 cut(s)	63, 184, 708, 764
DdeI	CTNAG	4 cut(s)	220, 289, 690, 840
DpnI	GATC	5 cut(s)	386, 685, 704, 1110, 1293
DpnII	GATC	5 cut(s)	384, 683, 702, 1108, 1291
EaeI	YGGCCR	1 cut(s)	943
Ecl136II	GAGCTC	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	1004
EcoICRI	GAGCTC	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	1148
EcoRII	CCWGG	1 cut(s)	1149
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	4 cut(s)	66, 187, 711, 767
FaqI	GGGAC	3 cut(s)	58, 809, 919
FatI	CATG	4 cut(s)	62, 183, 707, 763
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	5 cut(s)	207, 498, 534, 1158, 1181
FokI	GGATG	4 cut(s)	471, 733, 762, 793
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	5 cut(s)	207, 498, 534, 1158, 1181
FspBI	CTAG	6 cut(s)	203, 401, 414, 512, 860, 1028
GluI	GCNGC	5 cut(s)	207, 498, 534, 1158, 1181
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	3 cut(s)	712, 877, 945
HapII	CCGG	2 cut(s)	903, 1035
HgaI	GACGC	1 cut(s)	1090
Hin1I	GRCGYC	1 cut(s)	1215
Hin1II	CATG	4 cut(s)	66, 187, 711, 767
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	5 cut(s)	89, 309, 322, 630, 668
HpaII	CCGG	2 cut(s)	903, 1035
HphI	GGTGA	1 cut(s)	1049
Hpy188I	TCNGA	1 cut(s)	850
Hpy188III	TCNNGA	6 cut(s)	134, 283, 319, 665, 734, 1006
Hpy99I	CGWCG	1 cut(s)	968
HpyAV	CCTTC	4 cut(s)	105, 117, 148, 401
HpyCH4III	ACNGT	5 cut(s)	376, 518, 910, 1203, 1298
HpyCH4IV	ACGT	4 cut(s)	657, 918, 966, 1215
HpyCH4V	TGCA	6 cut(s)	163, 533, 763, 923, 1180, 1222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1163
HpyF3I	CTNAG	4 cut(s)	220, 289, 690, 840
HpySE526I	ACGT	4 cut(s)	657, 918, 966, 1215
Hsp92I	GRCGYC	1 cut(s)	1215
Hsp92II	CATG	4 cut(s)	66, 187, 711, 767
Kzo9I	GATC	5 cut(s)	384, 683, 702, 1108, 1291
LmnI	GCTCC	2 cut(s)	579, 1036
Lsp1109I	GCAGC	4 cut(s)	218, 484, 545, 1192
LweI	GCATC	2 cut(s)	520, 639
MabI	ACCWGGT	1 cut(s)	1149
MaeI	CTAG	6 cut(s)	203, 401, 414, 512, 860, 1028
MaeII	ACGT	4 cut(s)	657, 918, 966, 1215
MaeIII	GTNAC	4 cut(s)	176, 431, 739, 1092
MalI	GATC	5 cut(s)	386, 685, 704, 1110, 1293
MboI	GATC	5 cut(s)	384, 683, 702, 1108, 1291
MboII	GAAGA	7 cut(s)	41, 285, 416, 539, 678, 736, 926
MfeI	CAATTG	1 cut(s)	947
MflI	RGATCY	2 cut(s)	683, 1108
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	5 cut(s)	9, 158, 542, 829, 947
MmeI	TCCRAC	1 cut(s)	834
MnlI	CCTC	4 cut(s)	111, 290, 547, 711
MseI	TTAA	5 cut(s)	504, 546, 1119, 1265, 1300
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	903, 1035
MspR9I	CCNGG	3 cut(s)	904, 1035, 1151
MunI	CAATTG	1 cut(s)	947
Mva1269I	GAATGC	2 cut(s)	1046, 1222
MvaI	CCWGG	1 cut(s)	1151
MwoI	GCNNNNNNNGC	1 cut(s)	1163
NciI	CCSGG	2 cut(s)	904, 1035
NdeII	GATC	5 cut(s)	384, 683, 702, 1108, 1291
NlaIII	CATG	4 cut(s)	66, 187, 711, 767
NlaIV	GGNNCC	2 cut(s)	1242, 1261
NspI	RCATGY	1 cut(s)	66
PciI	ACATGT	1 cut(s)	62
PctI	GAATGC	2 cut(s)	1046, 1222
PfeI	GAWTC	5 cut(s)	89, 309, 322, 630, 668
PfoI	TCCNGGA	1 cut(s)	902
PkrI	GCNGC	5 cut(s)	208, 499, 535, 1159, 1182
PscI	ACATGT	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	290
Psp1406I	AACGTT	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	1149
PspGI	CCWGG	1 cut(s)	1149
PspN4I	GGNNCC	2 cut(s)	1242, 1261
PspPI	GGNCC	1 cut(s)	875
PsuI	RGATCY	2 cut(s)	683, 1108
PvuII	CAGCTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	5 cut(s)	504, 546, 1119, 1265, 1300
SatI	GCNGC	5 cut(s)	207, 498, 534, 1158, 1181
Sau3AI	GATC	5 cut(s)	384, 683, 702, 1108, 1291
Sau96I	GGNCC	1 cut(s)	875
ScrFI	CCNGG	3 cut(s)	904, 1035, 1151
SduI	GDGCHC	1 cut(s)	290
SexAI	ACCWGGT	1 cut(s)	1149
SfaNI	GCATC	2 cut(s)	520, 639
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	5 cut(s)	9, 158, 542, 829, 947
SsiI	CCGC	3 cut(s)	123, 500, 1157
SspI	AATATT	1 cut(s)	758
SspMI	CTAG	6 cut(s)	203, 401, 414, 512, 860, 1028
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	902, 1033, 1149
TaaI	ACNGT	5 cut(s)	376, 518, 910, 1203, 1298
TaiI	ACGT	4 cut(s)	660, 921, 969, 1218
TaqI	TCGA	1 cut(s)	387
TasI	AATT	5 cut(s)	9, 158, 542, 829, 947
TauI	GCSGC	1 cut(s)	1160
TfiI	GAWTC	5 cut(s)	89, 309, 322, 630, 668
Tru1I	TTAA	5 cut(s)	504, 546, 1119, 1265, 1300
Tru9I	TTAA	5 cut(s)	504, 546, 1119, 1265, 1300
TscAI	CASTG	4 cut(s)	381, 1084, 1167, 1301
TseI	GCWGC	4 cut(s)	206, 497, 533, 1180
TspDTI	ATGAA	6 cut(s)	17, 41, 540, 622, 737, 780
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	4 cut(s)	381, 1084, 1167, 1301
XagI	CCTNNNNNAGG	1 cut(s)	1148
XapI	RAATTY	1 cut(s)	542
XceI	RCATGY	1 cut(s)	66
XspI	CTAG	6 cut(s)	203, 401, 414, 512, 860, 1028
ZraI	GACGTC	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.