Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Reverse (-)

10771585 .. 10774403

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGAGCTTACCCACGACGGTTCCCTCCAAATCAGAACGACGAGCTCGTTCCTCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCAGGTTATGGCAAGATGCAGAGAATAGAGTGGTACTCAATAATATACTTAAGAAGAGTTATGATCAGAAGCCTAAGGTTCTTACGGTGGATGACAAGCTTATGGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGACTCTGGCTAAGAGTCAAGGCTATCTTAAGAACTTAAAAAGTGGTTCGTCTTCAGGGAAGAAATTACTTGCTGTGATTGGAGTGTATTCAGGCTTTGGTAGTCATCTGAGGCGTAATACATTTCGAGGGTCTTATATGCCACAAGGTGATGCTTTGAGGAAACTTGAGGAAAGAGGAATTGTCATACGTTTTGTGATTGGTCGAAGTCCAAATCGAGGTGATAGCTTAGATCGAAAAATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTGAGAATCATGAGGAGGCCCAAGAAGAGCTAGCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGGGATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTGAGGGGTTGATTGGCCTTCTTGAAAGTCGGCGTGGTCAAGATGCTGCTTACATTGGGTGTATGAAGTCTGGTGAAGTGGTTGCTGAAGAGGGAGGGAAATGGTATGAGCCAGAATGGTGGAAATTTGGGGACGAAAAATCGTACTTCCGTCATGCAGCTGGTTCGCTGTTAATACTATCCAAAACTTTGGCTCAGTATGTAAACATAAACAGTGGATCATTGAAGACATATGCATTTGATGATACCTCTATAGGATCTTGGATGATTGGTGTTCAGGCAACTTATATAGACGACAATCGCCTTTGCTGCAGCAGCATCAGACAAGACAAGGTGTGTTCTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

346

Amino Acids

39.06

Weight (kDa)

8.37

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	25 - 103	5.3e-08	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	134 - 328	6.1e-30	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	126
AclWI	GGATC	2 cut(s)	916, 955
AcsI	RAATTY	1 cut(s)	815
AcuI	CTGAAG	2 cut(s)	327, 798
AdeI	CACNNNGTG	1 cut(s)	437
AfaI	GTAC	2 cut(s)	168, 836
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflII	CTTAAG	2 cut(s)	182, 317
AgsI	TTSAA	4 cut(s)	275, 638, 716, 916
AluBI	AGCT	6 cut(s)	9, 47, 232, 516, 598, 851
AluI	AGCT	6 cut(s)	9, 47, 232, 516, 598, 851
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	916, 955
AoxI	GGCC	2 cut(s)	585, 706
ApeKI	GCWGC	6 cut(s)	629, 737, 848, 999, 1002, 1005
ApoI	RAATTY	1 cut(s)	815
Asp700I	GAANNNNTTC	1 cut(s)	617
AspA2I	CCTAGG	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	238, 586
AsuHPI	GGTGA	3 cut(s)	449, 521, 776
AsuNHI	GCTAGC	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	238
AvrII	CCTAGG	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	333, 923
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	6 cut(s)	616, 724, 860, 986, 1014, 1017
BcgI	CGANNNNNNTGC	2 cut(s)	837, 871
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	2 cut(s)	242, 599
BfmI	CTRYAG	2 cut(s)	942, 1000
BfrI	CTTAAG	2 cut(s)	182, 317
BfuAI	ACCTGC	1 cut(s)	126
BglII	AGATCT	2 cut(s)	253, 688
BisI	GCNGC	6 cut(s)	630, 738, 849, 1000, 1003, 1006
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	6 cut(s)	631, 739, 850, 1001, 1004, 1007
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	238, 586
BmiI	GGNNCC	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	652
BmsI	GCATC	6 cut(s)	139, 236, 430, 637, 724, 1017
BmtI	GCTAGC	1 cut(s)	602
BmuI	ACTGGG	1 cut(s)	652
BpiI	GAAGAC	2 cut(s)	333, 923
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpuEI	CTTGAG	4 cut(s)	278, 476, 590, 713
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	647
Bse21I	CCTNAGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	4 cut(s)	229, 251, 652, 960
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	3 cut(s)	80, 389, 899
BseNI	ACTGG	1 cut(s)	647
BseRI	GAGGAG	2 cut(s)	277, 596
BseXI	GCAGC	6 cut(s)	616, 724, 860, 986, 1014, 1017
BshFI	GGCC	2 cut(s)	587, 708
BsiHKAI	GWGCWC	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	836
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	836
BsnI	GGCC	2 cut(s)	587, 708
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	6 cut(s)	196, 253, 520, 688, 908, 947
BspANI	GGCC	2 cut(s)	587, 708
BspCNI	CTCAG	3 cut(s)	79, 390, 898
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	1004
BspMI	ACCTGC	1 cut(s)	126
BspOI	GCTAGC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	916, 955
BspQI	GCTCTTC	1 cut(s)	588
BspTI	CTTAAG	2 cut(s)	182, 317
BsrI	ACTGG	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	6 cut(s)	196, 253, 520, 688, 908, 947
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	22, 220, 905
Bst6I	CTCTTC	3 cut(s)	182, 588, 774
BstAFI	CTTAAG	2 cut(s)	182, 317
BstC8I	GCNNGC	2 cut(s)	133, 600
BstDEI	CTNAG	8 cut(s)	66, 78, 207, 300, 398, 517, 685, 885
BstF5I	GGATG	4 cut(s)	229, 251, 652, 960
BstKTI	GATC	6 cut(s)	199, 256, 523, 691, 911, 950
BstMBI	GATC	6 cut(s)	196, 253, 520, 688, 908, 947
BstMWI	GCNNNNNNNGC	2 cut(s)	999, 1005
BstSFI	CTRYAG	2 cut(s)	942, 1000
BstV1I	GCAGC	6 cut(s)	616, 724, 860, 986, 1014, 1017
BstV2I	GAAGAC	2 cut(s)	333, 923
BstX2I	RGATCY	3 cut(s)	253, 688, 947
BstXI	CCANNNNNNTGG	2 cut(s)	810, 880
BstYI	RGATCY	3 cut(s)	253, 688, 947
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	587, 708
BtsCI	GGATG	4 cut(s)	229, 251, 652, 960
BtsIMutI	CAGTG	1 cut(s)	910
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	133, 600
CciI	TCATGA	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	238, 586
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	167, 835
CviAII	CATG	2 cut(s)	578, 845
CviQI	GTAC	2 cut(s)	167, 835
DdeI	CTNAG	8 cut(s)	66, 78, 207, 300, 398, 517, 685, 885
DpnI	GATC	6 cut(s)	198, 255, 522, 690, 910, 949
DpnII	GATC	6 cut(s)	196, 253, 520, 688, 908, 947
DraIII	CACNNNGTG	1 cut(s)	437
Eam1104I	CTCTTC	3 cut(s)	182, 588, 774
EarI	CTCTTC	3 cut(s)	182, 588, 774
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	327, 798
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	581, 848
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 605, 637
FaqI	GGGAC	1 cut(s)	836
FatI	CATG	2 cut(s)	577, 844
FauNDI	CATATG	1 cut(s)	922
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	6 cut(s)	630, 738, 849, 1000, 1003, 1006
FokI	GGATG	4 cut(s)	236, 258, 659, 967
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	6 cut(s)	630, 738, 849, 1000, 1003, 1006
FspBI	CTAG	2 cut(s)	242, 599
GluI	GCNGC	6 cut(s)	630, 738, 849, 1000, 1003, 1006
HaeIII	GGCC	2 cut(s)	587, 708
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	581, 848
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	4 cut(s)	292, 304, 565, 574
HphI	GGTGA	3 cut(s)	449, 521, 776
Hpy166II	GTNNAC	2 cut(s)	291, 895
Hpy188I	TCNGA	5 cut(s)	37, 69, 201, 399, 1013
Hpy188III	TCNNGA	6 cut(s)	257, 569, 578, 692, 713, 731
Hpy8I	GTNNAC	2 cut(s)	291, 895
Hpy99I	CGWCG	5 cut(s)	22, 45, 116, 131, 536
HpyAV	CCTTC	2 cut(s)	93, 719
HpyCH4III	ACNGT	3 cut(s)	22, 220, 905
HpyCH4IV	ACGT	2 cut(s)	126, 478
HpyCH4V	TGCA	6 cut(s)	152, 249, 650, 848, 926, 1002
HpyF10VI	GCNNNNNNNGC	2 cut(s)	999, 1005
HpyF3I	CTNAG	8 cut(s)	66, 78, 207, 300, 398, 517, 685, 885
HpySE526I	ACGT	2 cut(s)	126, 478
Hsp92II	CATG	2 cut(s)	581, 848
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	6 cut(s)	196, 253, 520, 688, 908, 947
LguI	GCTCTTC	1 cut(s)	588
Lsp1109I	GCAGC	6 cut(s)	616, 724, 860, 986, 1014, 1017
LweI	GCATC	6 cut(s)	139, 236, 430, 637, 724, 1017
MaeI	CTAG	2 cut(s)	242, 599
MaeII	ACGT	2 cut(s)	126, 478
MalI	GATC	6 cut(s)	198, 255, 522, 690, 910, 949
MboI	GATC	6 cut(s)	196, 253, 520, 688, 908, 947
MboII	GAAGA	8 cut(s)	94, 199, 333, 361, 605, 610, 791, 928
MflI	RGATCY	3 cut(s)	253, 688, 947
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	4 cut(s)	267, 353, 468, 815
MlyI	GAGTC	2 cut(s)	286, 313
Mph1103I	ATGCAT	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	4 cut(s)	183, 318, 326, 863
MspA1I	CMGCKG	1 cut(s)	851
MspCI	CTTAAG	2 cut(s)	182, 317
MwoI	GCNNNNNNNGC	2 cut(s)	999, 1005
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	6 cut(s)	196, 253, 520, 688, 908, 947
NheI	GCTAGC	1 cut(s)	598
NlaIII	CATG	2 cut(s)	581, 848
NlaIV	GGNNCC	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	928
PagI	TCATGA	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	565, 574
PkrI	GCNGC	6 cut(s)	631, 739, 850, 1001, 1004, 1007
PleI	GAGTC	2 cut(s)	286, 312
PpsI	GAGTC	2 cut(s)	286, 312
PsiI	TTATAA	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	238, 586
PstI	CTGCAG	1 cut(s)	1004
PsuI	RGATCY	3 cut(s)	253, 688, 947
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	2 cut(s)	168, 836
RsaNI	GTAC	2 cut(s)	167, 835
SacI	GAGCTC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	4 cut(s)	183, 318, 326, 863
SatI	GCNGC	6 cut(s)	630, 738, 849, 1000, 1003, 1006
Sau3AI	GATC	6 cut(s)	196, 253, 520, 688, 908, 947
Sau96I	GGNCC	2 cut(s)	238, 586
SchI	GAGTC	2 cut(s)	286, 313
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	6 cut(s)	139, 236, 430, 637, 724, 1017
SfcI	CTRYAG	2 cut(s)	942, 1000
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	6 cut(s)	182, 257, 317, 455, 569, 692
SmoI	CTYRAG	6 cut(s)	182, 257, 317, 455, 569, 692
Sse9I	AATT	4 cut(s)	267, 353, 468, 815
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	2 cut(s)	242, 599
SstI	GAGCTC	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	3 cut(s)	22, 220, 905
TaiI	ACGT	2 cut(s)	129, 481
TaqI	TCGA	5 cut(s)	415, 493, 505, 523, 531
TasI	AATT	4 cut(s)	267, 353, 468, 815
TfiI	GAWTC	2 cut(s)	565, 574
Tru1I	TTAA	4 cut(s)	183, 318, 326, 863
Tru9I	TTAA	4 cut(s)	183, 318, 326, 863
TscAI	CASTG	1 cut(s)	910
TseI	GCWGC	6 cut(s)	629, 737, 848, 999, 1002, 1005
TspDTI	ATGAA	1 cut(s)	770
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	1 cut(s)	910
Vha464I	CTTAAG	2 cut(s)	182, 317
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	815
XmaJI	CCTAGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	2 cut(s)	242, 599
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.