Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008467.1

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2783

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008467.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 544 bp

tcccaacaaaggcgatagcttagaccgcaatattgatgaggaaagtcgcgcgacacaggatttcttgattcttgaaggtcatgaggaggctcaagaagagttgcctaagaaagcaaagttcttcttcagtaccgcggttcgaaattgggatgctgaattttatgtaaaagttgatgacaatatcgatcttgaccttgaggggataatcggactacttgaaaaacgtcatggtcaagacagtgcttatattggttgtatgaagtcaggagatgtcattgctgaagagggaaagtcttggtatgaacctgactggtggaagtttggcgatcagaaatcgtactttcgacatgccggtacttcactcttcatactatcgaagaacttagctcagtacataaacgttaacagtgcatctttgaagacttatgctcatgatgatgtatcagtgggttcatggatgatgggtatccaagcgacttatattgatgacaaccgtctttgctgtagtagcattagacaagacaaggtctgttcattagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

180

Amino Acids

20.48

Weight (kDa)

4.76

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	49, 51, 135
AciI	CCGC	3 cut(s)	26, 133, 135
AclI	AACGTT	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	2 cut(s)	110, 301
AfaI	GTAC	4 cut(s)	131, 339, 356, 393
AfiI	CCNNNNNNNGG	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	75, 219, 419
AluBI	AGCT	3 cut(s)	19, 387, 540
AluI	AGCT	3 cut(s)	19, 387, 540
ApoI	RAATTY	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	51
AsuII	TTCGAA	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	426
BccI	CCATC	1 cut(s)	455
BciVI	GTATCC	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	477
BmsI	GCATC	2 cut(s)	140, 420
BoxI	GACNNNNGTC	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	76, 216
Bsa29I	ATCGAT	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	9
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	155, 463
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	99
Bsh1236I	CGCG	3 cut(s)	49, 51, 135
BshVI	ATCGAT	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	185, 326
BspACI	CCGC	3 cut(s)	26, 133, 135
BspCNI	CTCAG	1 cut(s)	401
BspDI	ATCGAT	1 cut(s)	184
BspFNI	CGCG	3 cut(s)	49, 51, 135
BspHI	TCATGA	2 cut(s)	80, 431
BspT104I	TTCGAA	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	185, 326
Bst4CI	ACNGT	3 cut(s)	240, 408, 495
Bst6I	CTCTTC	3 cut(s)	91, 277, 369
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	4 cut(s)	20, 106, 383, 388
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	155, 463
BstFNI	CGCG	3 cut(s)	49, 51, 135
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	188, 329
BstMBI	GATC	2 cut(s)	185, 326
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 508
BstNSI	RCATGY	1 cut(s)	351
BstPAI	GACNNNNGTC	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	3 cut(s)	49, 51, 135
BstV2I	GAAGAC	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	477
BsuTUI	ATCGAT	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	155, 463
BtsIMutI	CAGTG	3 cut(s)	245, 413, 451
CciI	TCATGA	2 cut(s)	80, 431
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	351
Cfr42I	CCGCGG	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	184
Csp6I	GTAC	4 cut(s)	130, 338, 355, 392
CviAII	CATG	5 cut(s)	81, 228, 348, 432, 454
CviJI	RGCY	4 cut(s)	19, 90, 387, 540
CviKI_1	RGCY	4 cut(s)	19, 90, 387, 540
CviQI	GTAC	4 cut(s)	130, 338, 355, 392
DdeI	CTNAG	4 cut(s)	20, 106, 383, 388
DpnI	GATC	2 cut(s)	187, 328
DpnII	GATC	2 cut(s)	185, 326
Eam1104I	CTCTTC	3 cut(s)	91, 277, 369
EarI	CTCTTC	3 cut(s)	91, 277, 369
Eco57I	CTGAAG	2 cut(s)	110, 301
FaeI	CATG	5 cut(s)	84, 231, 351, 435, 457
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	5 cut(s)	80, 227, 347, 431, 453
FokI	GGATG	2 cut(s)	162, 470
GlaI	GCGC	1 cut(s)	50
HapII	CCGG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	5 cut(s)	84, 231, 351, 435, 457
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HinfI	GANTC	1 cut(s)	68
HpaI	GTTAAC	1 cut(s)	404
HpaII	CCGG	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	210, 331
Hpy188III	TCNNGA	8 cut(s)	65, 72, 81, 93, 189, 234, 265, 432
Hpy8I	GTNNAC	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	3 cut(s)	240, 408, 495
HpyCH4IV	ACGT	2 cut(s)	224, 400
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 508
HpyF3I	CTNAG	4 cut(s)	20, 106, 383, 388
HpySE526I	ACGT	2 cut(s)	224, 400
Hsp92II	CATG	5 cut(s)	84, 231, 351, 435, 457
HspAI	GCGC	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	404
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	185, 326
LpnPI	CCDG	5 cut(s)	42, 250, 296, 319, 365
LweI	GCATC	2 cut(s)	140, 420
MaeII	ACGT	2 cut(s)	224, 400
MalI	GATC	2 cut(s)	187, 328
MboI	GATC	2 cut(s)	185, 326
MboII	GAAGA	7 cut(s)	108, 113, 116, 294, 356, 389, 431
MluCI	AATT	2 cut(s)	143, 156
MnlI	CCTC	5 cut(s)	32, 77, 80, 191, 278
MseI	TTAA	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	436
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	352
MvnI	CGCG	3 cut(s)	49, 51, 135
MwoI	GCNNNNNNNGC	2 cut(s)	25, 508
NdeII	GATC	2 cut(s)	185, 326
NlaIII	CATG	5 cut(s)	84, 231, 351, 435, 457
NspI	RCATGY	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	140
PagI	TCATGA	2 cut(s)	80, 431
PfeI	GAWTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	525
PshAI	GACNNNNGTC	1 cut(s)	493
Psp1406I	AACGTT	1 cut(s)	400
PsyI	GACNNNGTC	1 cut(s)	525
RsaI	GTAC	4 cut(s)	131, 339, 356, 393
RsaNI	GTAC	4 cut(s)	130, 338, 355, 392
RseI	CAYNNNNRTG	1 cut(s)	436
SacII	CCGCGG	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	403
Sau3AI	GATC	2 cut(s)	185, 326
SetI	ASST	9 cut(s)	21, 80, 196, 227, 308, 389, 403, 529, 542
SfaNI	GCATC	2 cut(s)	140, 420
SfcI	CTRYAG	1 cut(s)	503
Sfr303I	CCGCGG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	436
SmlI	CTYRAG	2 cut(s)	91, 195
SmoI	CTYRAG	2 cut(s)	91, 195
Sse9I	AATT	2 cut(s)	143, 156
SsiI	CCGC	3 cut(s)	26, 133, 135
SspI	AATATT	1 cut(s)	32
TaaI	ACNGT	3 cut(s)	240, 408, 495
TaiI	ACGT	2 cut(s)	227, 403
TaqI	TCGA	4 cut(s)	140, 184, 344, 375
TasI	AATT	2 cut(s)	143, 156
TatI	WGTACW	1 cut(s)	391
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	3 cut(s)	245, 413, 451
TspDTI	ATGAA	5 cut(s)	273, 316, 356, 442, 523
TspRI	CASTG	3 cut(s)	245, 413, 451
Tth111I	GACNNNGTC	1 cut(s)	525
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.