Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Forward (+)

17513424 .. 17516473

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1157500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTGGATTCGTGATTACTGTAGTCATGTTAAGGAAAAATTAAACTGGCTTACTAACAACCATTGGATCCTATTGGCCTTTGCAGGTGATGCTTTGAGGAAGCTAGAAGAAAGAGGAATAGTAATACGCTTTGTAATTGTTCGGAGTGCCAATCGGGGTGATAGCTTACATCGGAATATTGATAAGGAAAGTCATTCGACAAAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAGATGCCCAAGAAAGCAAAGTTCTTCTTCAGTACTGCAGTTCAGAAATGGGATGCGGAGTTTTATGTCAAAGTTGATGACAAGGGGCTAATTGGACTTCTTGAACATCGTTGTGCTCAAGAAGGTGCTTATATCGGCTGCATGAAGTCAGGAGATGTGATTTCTGAAGAGGGAAAGTCTTGGTATGAACCTGACAGGTGGAAATTTGGGGATCAGAAATCGTACTTCCGACATGCAGGTGGTTCCCTCATTATACTATCCAAGAACTTAGCTCAGTATATCAACATAAACAGACTTATGCTCATGATGATGTATCAGTGGGTCCATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

192

Amino Acids

22.36

Weight (kDa)

7.75

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	38 - 180	7.4e-16	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	74, 470
Acc36I	ACCTGC	2 cut(s)	74, 470
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	3 cut(s)	61, 74, 462
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	2 cut(s)	256, 429
AfaI	GTAC	2 cut(s)	277, 467
AgsI	TTSAA	2 cut(s)	221, 347
AluBI	AGCT	3 cut(s)	103, 165, 515
AluI	AGCT	3 cut(s)	103, 165, 515
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	3 cut(s)	61, 74, 462
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	565
AsuHPI	GGTGA	2 cut(s)	98, 170
AvaII	GGWCC	1 cut(s)	565
BamHI	GGATCC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	2 cut(s)	19, 279
BfuAI	ACCTGC	2 cut(s)	74, 470
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
BmcAI	AGTACT	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	3 cut(s)	68, 487, 566
BmsI	GCATC	3 cut(s)	79, 237, 286
BpuEI	CTTGAG	2 cut(s)	222, 345
BsaJI	CCNNGG	1 cut(s)	568
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	368
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	66, 454
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	529
BspHI	TCATGA	2 cut(s)	226, 546
BspLI	GGNNCC	3 cut(s)	68, 487, 566
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	2 cut(s)	74, 470
BspPI	GGATC	3 cut(s)	61, 74, 462
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	2 cut(s)	66, 454
BssT1I	CCWWGG	1 cut(s)	568
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	237, 405
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	511, 516
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	2 cut(s)	69, 457
BstMBI	GATC	2 cut(s)	66, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	19, 279
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	566
BveI	ACCTGC	2 cut(s)	74, 470
CciI	TCATGA	2 cut(s)	226, 546
Cfr13I	GGNCC	1 cut(s)	565
Csp6I	GTAC	2 cut(s)	276, 466
CviAII	CATG	6 cut(s)	26, 227, 385, 476, 547, 569
CviJI	RGCY	8 cut(s)	49, 77, 103, 165, 236, 331, 381, 515
CviKI_1	RGCY	8 cut(s)	49, 77, 103, 165, 236, 331, 381, 515
CviQI	GTAC	2 cut(s)	276, 466
DdeI	CTNAG	2 cut(s)	511, 516
DpnI	GATC	2 cut(s)	68, 456
DpnII	GATC	2 cut(s)	66, 454
Eam1104I	CTCTTC	2 cut(s)	237, 405
EarI	CTCTTC	2 cut(s)	237, 405
Eco130I	CCWWGG	1 cut(s)	568
Eco47I	GGWCC	1 cut(s)	565
Eco57I	CTGAAG	2 cut(s)	256, 429
EcoT14I	CCWWGG	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	6 cut(s)	29, 230, 388, 479, 550, 572
FalI	AAGNNNNNCTT	4 cut(s)	194, 226, 254, 286
FatI	CATG	6 cut(s)	25, 226, 384, 475, 546, 568
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	382
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	6 cut(s)	29, 230, 388, 479, 550, 572
HinfI	GANTC	2 cut(s)	7, 214
HphI	GGTGA	2 cut(s)	98, 170
Hpy188I	TCNGA	6 cut(s)	144, 174, 288, 409, 459, 473
Hpy188III	TCNNGA	9 cut(s)	11, 211, 218, 227, 239, 344, 362, 393, 547
HpyAV	CCTTC	2 cut(s)	215, 359
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	4 cut(s)	83, 281, 384, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	511, 516
Hsp92II	CATG	6 cut(s)	29, 230, 388, 479, 550, 572
Kzo9I	GATC	2 cut(s)	66, 454
LpnPI	CCDG	6 cut(s)	31, 69, 378, 424, 447, 465
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	3 cut(s)	79, 237, 286
MaeI	CTAG	1 cut(s)	104
MalI	GATC	2 cut(s)	68, 456
MboI	GATC	2 cut(s)	66, 454
MboII	GAAGA	5 cut(s)	119, 254, 259, 262, 422
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	4 cut(s)	38, 135, 333, 446
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	6 cut(s)	90, 107, 223, 226, 406, 500
MseI	TTAA	2 cut(s)	30, 41
MslI	CAYNNNNRTG	3 cut(s)	354, 480, 551
MwoI	GCNNNNNNNGC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	66, 454
NlaIII	CATG	6 cut(s)	29, 230, 388, 479, 550, 572
NlaIV	GGNNCC	3 cut(s)	68, 487, 566
NspI	RCATGY	1 cut(s)	479
PagI	TCATGA	2 cut(s)	226, 546
PaqCI	CACCTGC	2 cut(s)	74, 470
PfeI	GAWTC	2 cut(s)	7, 214
PkrI	GCNGC	1 cut(s)	383
PspN4I	GGNNCC	3 cut(s)	68, 487, 566
PspPI	GGNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	2 cut(s)	277, 467
RsaNI	GTAC	2 cut(s)	276, 466
RseI	CAYNNNNRTG	3 cut(s)	354, 480, 551
SaqAI	TTAA	2 cut(s)	30, 41
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	2 cut(s)	66, 454
Sau96I	GGNCC	1 cut(s)	565
ScaI	AGTACT	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	9 cut(s)	88, 105, 167, 226, 370, 436, 443, 484, 517
SfaNI	GCATC	3 cut(s)	79, 237, 286
SfcI	CTRYAG	2 cut(s)	19, 279
SinI	GGWCC	1 cut(s)	565
SmiMI	CAYNNNNRTG	3 cut(s)	354, 480, 551
SmlI	CTYRAG	2 cut(s)	237, 360
SmoI	CTYRAG	2 cut(s)	237, 360
Sse9I	AATT	4 cut(s)	38, 135, 333, 446
SsiI	CCGC	1 cut(s)	299
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	197
TasI	AATT	4 cut(s)	38, 135, 333, 446
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	2 cut(s)	7, 214
Tru1I	TTAA	2 cut(s)	30, 41
Tru9I	TTAA	2 cut(s)	30, 41
TscAI	CASTG	1 cut(s)	566
TseI	GCWGC	1 cut(s)	381
TspDTI	ATGAA	2 cut(s)	401, 444
TspRI	CASTG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	565
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	1 cut(s)	104
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.