Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Reverse (-)

57780733 .. 57785098

Gene Structure 4366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG384700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGAGCTTACCGACGACGACGTCGAAATCGGACAGACGATCGAGATCGAAGCCTATTCAAACTTCCAAGCCTTCCATCTTCTTGGCCTTCTTCTCCTGCGTCGCTTGGCTCTACGTCGCCGGCCGGTTGTGGCAAGATGCGGAGAACAGAACAGTCTTAGCTAATCTTCTTCAGAAAAACTTAGGCCAGAGACCGATGGTGCTTTCAGTTGAAGATAAGTTAGCAGTCCTTGGATGCAAGGACCTGGAGAGGAGGATTGTTGAAGCTGAGATGGACTTGACGTTGGCCAAGAGTCAAGGCTACCTCAAGAACAACTTGAAGCAAACCTCTGGTCCATTTCTTGCCGTTATTGGAGTTTTTACCGGATTTGGCAGCCGTTTGCAGCGGAATGGGTTTCGAGGGTCTTGGATGCCTAAAGTTGATGCTTTGAAAAAACTTGAAGAAAGAGGAGTAGTCATACGTTTTGTGATTGGTCGGAGTCCCAACAAAGGTGATAGCTTAGACCGCAATATTGATGAGGAAAGTCGCGCGACACAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAGTTGCCTAAGAAAGCAAAGTTCTTCTTCAGTACCGCAGTTCGAAATTGGGATGCTGAATTTTATGTAAAAGTTGATGACAATATCGATCTTGACCTTGAGGGGATAATCGGACTTCTTGAAAAACGTCGTGGTCAAGACAGTGCTTATATTGGTTGTATGAAGTCAGGAGATGTGATTGCTGAAGAGTACATACTTCTCTATCCCTATACCTTTGTGCAACGTTATTGTATTCTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

274

Amino Acids

31.13

Weight (kDa)

8.24

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	23 - 100	9.8e-07	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	129 - 256	2.8e-18	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AatII	GACGTC	1 cut(s)	26
AccII	CGCG	2 cut(s)	531, 533
AciI	CCGC	4 cut(s)	143, 388, 508, 615
AclI	AACGTT	1 cut(s)	802
AcoI	YGGCCR	2 cut(s)	124, 288
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	3 cut(s)	158, 592, 783
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	2 cut(s)	613, 770
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	8 cut(s)	62, 215, 266, 322, 433, 443, 557, 701
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	4 cut(s)	9, 164, 269, 501
AluI	AGCT	4 cut(s)	9, 164, 269, 501
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	4 cut(s)	87, 124, 187, 288
ApeKI	GCWGC	2 cut(s)	375, 385
ApoI	RAATTY	1 cut(s)	638
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	244, 335
AsuHPI	GGTGA	1 cut(s)	506
AsuII	TTCGAA	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	244, 335
BalI	TGGCCA	1 cut(s)	290
BarI	GAAGNNNNNNTAC	2 cut(s)	756, 788
BbvI	GCAGC	2 cut(s)	387, 397
BccI	CCATC	3 cut(s)	86, 193, 268
BceAI	ACGGC	2 cut(s)	332, 363
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	376, 386
BlsI	GCNGC	2 cut(s)	377, 387
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	244, 335
BmgT120I	GGNCC	2 cut(s)	244, 335
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	5 cut(s)	130, 227, 402, 415, 622
BpmI	CTGGAG	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	622
BpuEI	CTTGAG	3 cut(s)	293, 558, 698
Bsa29I	ATCGAT	1 cut(s)	666
BsaBI	GATNNNNATC	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse118I	RCCGGY	2 cut(s)	122, 126
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	242, 417, 637
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	3 cut(s)	268, 465, 581
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	387, 397
Bsh1236I	CGCG	2 cut(s)	531, 533
Bsh1285I	CGRYCG	2 cut(s)	44, 127
BshFI	GGCC	4 cut(s)	89, 126, 189, 290
BshVI	ATCGAT	1 cut(s)	666
BsiEI	CGRYCG	2 cut(s)	44, 127
BsiSI	CCGG	3 cut(s)	123, 127, 366
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	4 cut(s)	89, 126, 189, 290
Bso31I	GGTCTC	1 cut(s)	187
Bsp119I	TTCGAA	1 cut(s)	622
Bsp143I	GATC	3 cut(s)	41, 47, 667
BspACI	CCGC	4 cut(s)	143, 388, 508, 615
BspANI	GGCC	4 cut(s)	89, 126, 189, 290
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	666
BspFNI	CGCG	2 cut(s)	531, 533
BspHI	TCATGA	1 cut(s)	562
BspT104I	TTCGAA	1 cut(s)	622
BspTNI	GGTCTC	1 cut(s)	187
BsrFI	RCCGGY	2 cut(s)	122, 126
BssAI	RCCGGY	2 cut(s)	122, 126
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	41, 47, 667
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	157, 722
Bst6I	CTCTTC	2 cut(s)	573, 759
BstACI	GRCGYC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	5 cut(s)	160, 184, 270, 502, 588
BstF5I	GGATG	3 cut(s)	242, 417, 637
BstFNI	CGCG	2 cut(s)	531, 533
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	3 cut(s)	44, 50, 670
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	41, 47, 667
BstMCI	CGRYCG	2 cut(s)	44, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstUI	CGCG	2 cut(s)	531, 533
BstV1I	GCAGC	2 cut(s)	387, 397
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstZI	CGGCCG	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	666
BsuRI	GGCC	4 cut(s)	89, 126, 189, 290
BsuTUI	ATCGAT	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	242, 417, 637
BtsIMutI	CAGTG	1 cut(s)	727
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	533
Cfr10I	RCCGGY	2 cut(s)	122, 126
Cfr13I	GGNCC	2 cut(s)	244, 335
ClaI	ATCGAT	1 cut(s)	666
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	612, 769
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	2 cut(s)	612, 769
DdeI	CTNAG	5 cut(s)	160, 184, 270, 502, 588
DpnI	GATC	3 cut(s)	43, 49, 669
DpnII	GATC	3 cut(s)	41, 47, 667
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	2 cut(s)	124, 288
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	573, 759
EarI	CTCTTC	2 cut(s)	573, 759
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	244, 335
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	3 cut(s)	158, 592, 783
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	1 cut(s)	566
FaiI	YATR	7 cut(s)	461, 564, 645, 729, 740, 773, 789
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 590, 622
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	376, 386
FokI	GGATG	3 cut(s)	249, 424, 644
Fsp4HI	GCNGC	2 cut(s)	376, 386
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	2 cut(s)	376, 386
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	4 cut(s)	89, 126, 189, 290
HapII	CCGG	3 cut(s)	123, 127, 366
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	533
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	566
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HinfI	GANTC	3 cut(s)	295, 481, 550
HpaII	CCGG	3 cut(s)	123, 127, 366
HphI	GGTGA	1 cut(s)	506
Hpy188I	TCNGA	4 cut(s)	34, 177, 480, 692
Hpy99I	CGWCG	7 cut(s)	19, 22, 25, 28, 107, 122, 711
HpyAV	CCTTC	3 cut(s)	84, 100, 551
HpyCH4III	ACNGT	2 cut(s)	157, 722
HpyCH4IV	ACGT	6 cut(s)	23, 117, 284, 463, 706, 802
HpyCH4V	TGCA	3 cut(s)	240, 385, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	5 cut(s)	160, 184, 270, 502, 588
HpySE526I	ACGT	6 cut(s)	23, 117, 284, 463, 706, 802
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	566
HspAI	GCGC	1 cut(s)	531
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	41, 47, 667
Lsp1109I	GCAGC	2 cut(s)	387, 397
LweI	GCATC	5 cut(s)	130, 227, 402, 415, 622
MaeII	ACGT	6 cut(s)	23, 117, 284, 463, 706, 802
MalI	GATC	3 cut(s)	43, 49, 669
MboI	GATC	3 cut(s)	41, 47, 667
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	2 cut(s)	625, 638
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	304, 490
MmeI	TCCRAC	1 cut(s)	458
Mox20I	TGGCCA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	3 cut(s)	123, 127, 366
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	2 cut(s)	531, 533
MwoI	GCNNNNNNNGC	1 cut(s)	507
NaeI	GCCGGC	1 cut(s)	124
NdeII	GATC	3 cut(s)	41, 47, 667
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	622
PagI	TCATGA	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	550
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	377, 387
Ple19I	CGATCG	1 cut(s)	44
PleI	GAGTC	2 cut(s)	303, 489
PpsI	GAGTC	2 cut(s)	303, 489
PpuMI	RGGWCCY	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	802
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	244, 335
PspPPI	RGGWCCY	1 cut(s)	244
PsyI	GACNNNGTC	1 cut(s)	22
PvuI	CGATCG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	613, 770
RsaNI	GTAC	2 cut(s)	612, 769
SatI	GCNGC	2 cut(s)	376, 386
Sau3AI	GATC	3 cut(s)	41, 47, 667
Sau96I	GGNCC	2 cut(s)	244, 335
SchI	GAGTC	2 cut(s)	304, 490
ScrFI	CCNGG	1 cut(s)	248
SfaNI	GCATC	5 cut(s)	130, 227, 402, 415, 622
SfuI	TTCGAA	1 cut(s)	622
SinI	GGWCC	2 cut(s)	244, 335
SmlI	CTYRAG	3 cut(s)	308, 573, 677
SmoI	CTYRAG	3 cut(s)	308, 573, 677
Sse9I	AATT	2 cut(s)	625, 638
SsiI	CCGC	4 cut(s)	143, 388, 508, 615
SspI	AATATT	1 cut(s)	514
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	157, 722
TaiI	ACGT	6 cut(s)	26, 120, 287, 466, 709, 805
TaqI	TCGA	6 cut(s)	26, 44, 50, 400, 622, 666
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	625, 638
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	1 cut(s)	550
TscAI	CASTG	1 cut(s)	727
TseI	GCWGC	2 cut(s)	375, 385
TspDTI	ATGAA	1 cut(s)	755
TspRI	CASTG	1 cut(s)	727
Tth111I	GACNNNGTC	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	244, 335
XapI	RAATTY	1 cut(s)	638
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.