Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042947.1

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1167

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042947.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

tcccaacaaaggcgatagcttagaccgcaatattgatgaggaaagtcgcgcgacacaggatttcttgattcttgaaggtcatgaggaggctcaagaagagttgcctaagaaagcaaagttcttcttcagtaccgcggttcgaaattgggatgctgaattttatgtaaaagttgatgacaatatcgatcttgaccttgaggggataatcggactacttgaaaaacgtcgtggtcaagacagtgcttatattggttgtatgaagtcaggagatgtcattgctgaagagtacatacttctctatccctatacctttgtgcaacgggaaagtcttggtatgaacctgactggtggaagtttggcgatcagaaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

4.51

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	49, 51, 135
AciI	CCGC	3 cut(s)	26, 133, 135
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	2 cut(s)	110, 301
AfaI	GTAC	2 cut(s)	131, 288
AfiI	CCNNNNNNNGG	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	75, 219
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	51
AsuII	TTCGAA	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BmsI	GCATC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	76, 216
Bsa29I	ATCGAT	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	274
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	99
Bsh1236I	CGCG	3 cut(s)	49, 51, 135
BshVI	ATCGAT	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	185, 361
BspACI	CCGC	3 cut(s)	26, 133, 135
BspDI	ATCGAT	1 cut(s)	184
BspFNI	CGCG	3 cut(s)	49, 51, 135
BspHI	TCATGA	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	185, 361
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	2 cut(s)	91, 277
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	20, 106
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	155
BstFNI	CGCG	3 cut(s)	49, 51, 135
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	188, 364
BstMBI	GATC	2 cut(s)	185, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstUI	CGCG	3 cut(s)	49, 51, 135
Bsu15I	ATCGAT	1 cut(s)	184
BsuTUI	ATCGAT	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	80
CfoI	GCGC	1 cut(s)	51
Cfr42I	CCGCGG	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	130, 287
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	2 cut(s)	19, 90
CviKI_1	RGCY	2 cut(s)	19, 90
CviQI	GTAC	2 cut(s)	130, 287
DdeI	CTNAG	2 cut(s)	20, 106
DpnI	GATC	2 cut(s)	187, 363
DpnII	GATC	2 cut(s)	185, 361
Eam1104I	CTCTTC	2 cut(s)	91, 277
EarI	CTCTTC	2 cut(s)	91, 277
Eco57I	CTGAAG	2 cut(s)	110, 301
FaeI	CATG	1 cut(s)	84
FaiI	YATR	7 cut(s)	82, 163, 247, 258, 291, 307, 336
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	1 cut(s)	80
FokI	GGATG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	210, 366
Hpy188III	TCNNGA	7 cut(s)	65, 72, 81, 93, 189, 234, 265
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	20, 106
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	84
HspAI	GCGC	1 cut(s)	49
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	185, 361
LpnPI	CCDG	4 cut(s)	42, 250, 331, 354
LweI	GCATC	1 cut(s)	140
MaeII	ACGT	1 cut(s)	224
MalI	GATC	2 cut(s)	187, 363
MboI	GATC	2 cut(s)	185, 361
MboII	GAAGA	4 cut(s)	108, 113, 116, 294
MluCI	AATT	2 cut(s)	143, 156
MnlI	CCTC	4 cut(s)	32, 77, 80, 191
MspA1I	CMGCKG	1 cut(s)	135
MvnI	CGCG	3 cut(s)	49, 51, 135
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	185, 361
NlaIII	CATG	1 cut(s)	84
NspV	TTCGAA	1 cut(s)	140
PagI	TCATGA	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	68
RsaI	GTAC	2 cut(s)	131, 288
RsaNI	GTAC	2 cut(s)	130, 287
SacII	CCGCGG	1 cut(s)	136
Sau3AI	GATC	2 cut(s)	185, 361
SetI	ASST	6 cut(s)	21, 80, 196, 227, 312, 343
SfaNI	GCATC	1 cut(s)	140
Sfr303I	CCGCGG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	91, 195
SmoI	CTYRAG	2 cut(s)	91, 195
Sse9I	AATT	2 cut(s)	143, 156
SsiI	CCGC	3 cut(s)	26, 133, 135
SspI	AATATT	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	140, 184
TasI	AATT	2 cut(s)	143, 156
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	273, 351
TspRI	CASTG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.