Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Reverse (-)

58030874 .. 58034443

Gene Structure 3570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGAGCTTACCGACGACGACGACGACGTCGAAATCGGACAGACGATCGAGATCGAAGCCTATTCAAACTTCCAAGCCTTCCATCTTCTTGGCCTTCTTCTCCTGCGTCGCTTGGCTCTACGTCGCCGGCCGGTTGTGGCAAGATGCGGAGAACAGAACAGTCTTAGCTAATCTTCTTAAGAAAAACTTAGGCCAGAGACCGATGGTGCTTTCAGTTGAAGATAAGTTAGCAGTCCTTGGATGCAAGGACCTGGAGAGGAGGATTGTTGAAGCTGAGATGGACTTGACGTTGGCCAAGAGTCAAGGCTACCTCAAGAACAACTTGAAGCAAACCTCTGGTCCATTTCTCGCCGTTATTGGAGTTTTTACCGGATTTGGCAGCCGTTTGCAGCGGAATGGGTTTCGAGGGTCTTGGATGCCTAAAGTTGATGCTTTGAAAAAACTTGAAGAAAGAGGAGTAGTCATACGTTTTGTGATTGGTCGGAGTCCCAACAAAGGCGATAGCTTAGACCGCAATATCGATGAGGAAAGTCGCGCGACACAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAGTTGCCTAAGAAAGCAAAGTTCTTCTTCAGTACCGCGGTTCGAAATTGGGATGCTGAATTTTATGTAAAAGTTGATGACAATATCGATCTTGACCTTGAGGGGATAATCGGACTACTTGAAAAACGTCGTGGTCAAGACAGTGCTTATATTGGTTGTATGAAGTCAGGAGATGTCATTGCTGAAGAGGGAAAGTCTTGGTATGAACCTGACTGGTGGAAGTTTGGCGATCAGAAATCGTACTTTCGACATGCCGGTACTTCACTCTTCATACTATCGAAGAACTTAGCTCAGTACATAAACGTTAACAGTGCATCTTTGAAGACTTATGCTCATGATGATGTATCAGTGGGTTCATGGATGATGGGTATCCAAGCGACTTATATTGATGACAACCGTCTTTGCTGTAGTAGCATTAGACAAGACAAGGTCTGTTCATTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

343

Amino Acids

38.76

Weight (kDa)

8.4

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	25 - 102	1.5e-06	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	131 - 325	5.9e-31	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AatII	GACGTC	1 cut(s)	32
AccII	CGCG	3 cut(s)	537, 539, 623
AciI	CCGC	5 cut(s)	149, 394, 514, 621, 623
AclI	AACGTT	1 cut(s)	888
AcoI	YGGCCR	2 cut(s)	130, 294
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	2 cut(s)	598, 789
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	4 cut(s)	619, 827, 844, 881
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	9 cut(s)	68, 221, 272, 328, 439, 449, 563, 707, 907
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	6 cut(s)	9, 170, 275, 507, 875, 1028
AluI	AGCT	6 cut(s)	9, 170, 275, 507, 875, 1028
Alw26I	GTCTC	1 cut(s)	193
AoxI	GGCC	4 cut(s)	93, 130, 193, 294
ApeKI	GCWGC	2 cut(s)	381, 391
ApoI	RAATTY	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	250, 341
AsuII	TTCGAA	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	250, 341
BalI	TGGCCA	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	914
BbvI	GCAGC	2 cut(s)	393, 403
BccI	CCATC	4 cut(s)	92, 199, 274, 943
BceAI	ACGGC	2 cut(s)	338, 369
BciT130I	CCWGG	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	965
BcoDI	GTCTC	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	991
BfrI	CTTAAG	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	965
BisI	GCNGC	2 cut(s)	382, 392
BlsI	GCNGC	2 cut(s)	383, 393
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	2 cut(s)	250, 341
BmgT120I	GGNCC	2 cut(s)	250, 341
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	6 cut(s)	136, 233, 408, 421, 628, 908
BoxI	GACNNNNGTC	1 cut(s)	981
BpiI	GAAGAC	1 cut(s)	914
BpmI	CTGGAG	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	628
BpuEI	CTTGAG	3 cut(s)	299, 564, 704
Bsa29I	ATCGAT	2 cut(s)	522, 672
BsaBI	GATNNNNATC	2 cut(s)	52, 953
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	238, 621
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	3 cut(s)	128, 132, 839
Bse1I	ACTGG	1 cut(s)	803
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	2 cut(s)	52, 953
BseBI	CCWGG	1 cut(s)	254
BseCI	ATCGAT	2 cut(s)	522, 672
BseDI	CCNNGG	2 cut(s)	238, 621
BseGI	GGATG	4 cut(s)	248, 423, 643, 951
BseJI	GATNNNNATC	2 cut(s)	52, 953
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	2 cut(s)	267, 890
BseNI	ACTGG	1 cut(s)	803
BseRI	GAGGAG	3 cut(s)	274, 471, 587
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	393, 403
Bsh1236I	CGCG	3 cut(s)	537, 539, 623
Bsh1285I	CGRYCG	2 cut(s)	50, 133
BshFI	GGCC	4 cut(s)	95, 132, 195, 296
BshVI	ATCGAT	2 cut(s)	522, 672
BsiEI	CGRYCG	2 cut(s)	50, 133
BsiSI	CCGG	4 cut(s)	129, 133, 372, 840
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	4 cut(s)	95, 132, 195, 296
Bso31I	GGTCTC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	47, 53, 673, 814
BspACI	CCGC	5 cut(s)	149, 394, 514, 621, 623
BspANI	GGCC	4 cut(s)	95, 132, 195, 296
BspCNI	CTCAG	2 cut(s)	268, 889
BspDI	ATCGAT	2 cut(s)	522, 672
BspFNI	CGCG	3 cut(s)	537, 539, 623
BspHI	TCATGA	2 cut(s)	568, 919
BspT104I	TTCGAA	1 cut(s)	628
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	762
BsrFI	RCCGGY	3 cut(s)	128, 132, 839
BsrI	ACTGG	1 cut(s)	803
BssAI	RCCGGY	3 cut(s)	128, 132, 839
BssECI	CCNNGG	2 cut(s)	238, 621
BssMI	GATC	4 cut(s)	47, 53, 673, 814
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	4 cut(s)	163, 728, 896, 983
Bst6I	CTCTTC	3 cut(s)	579, 765, 857
BstACI	GRCGYC	1 cut(s)	29
BstAFI	CTTAAG	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	7 cut(s)	166, 190, 276, 508, 594, 871, 876
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	4 cut(s)	248, 423, 643, 951
BstFNI	CGCG	3 cut(s)	537, 539, 623
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	4 cut(s)	50, 56, 676, 817
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	4 cut(s)	47, 53, 673, 814
BstMCI	CGRYCG	2 cut(s)	50, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 996
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	839
BstPAI	GACNNNNGTC	1 cut(s)	981
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	991
BstUI	CGCG	3 cut(s)	537, 539, 623
BstV1I	GCAGC	2 cut(s)	393, 403
BstV2I	GAAGAC	1 cut(s)	914
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstZI	CGGCCG	1 cut(s)	130
Bsu15I	ATCGAT	2 cut(s)	522, 672
BsuI	GTATCC	1 cut(s)	965
BsuRI	GGCC	4 cut(s)	95, 132, 195, 296
BsuTUI	ATCGAT	2 cut(s)	522, 672
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	4 cut(s)	248, 423, 643, 951
BtsIMutI	CAGTG	3 cut(s)	733, 901, 939
Cac8I	GCNNGC	1 cut(s)	130
CciI	TCATGA	2 cut(s)	568, 919
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	3 cut(s)	128, 132, 839
Cfr13I	GGNCC	2 cut(s)	250, 341
Cfr42I	CCGCGG	1 cut(s)	624
ClaI	ATCGAT	2 cut(s)	522, 672
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	4 cut(s)	618, 826, 843, 880
CviAII	CATG	4 cut(s)	569, 836, 920, 942
CviQI	GTAC	4 cut(s)	618, 826, 843, 880
DdeI	CTNAG	7 cut(s)	166, 190, 276, 508, 594, 871, 876
DpnI	GATC	4 cut(s)	49, 55, 675, 816
DpnII	GATC	4 cut(s)	47, 53, 673, 814
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	130, 294
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	579, 765, 857
EarI	CTCTTC	3 cut(s)	579, 765, 857
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	250, 341
Eco52I	CGGCCG	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	598, 789
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	4 cut(s)	572, 839, 923, 945
FalI	AAGNNNNNCTT	6 cut(s)	173, 205, 308, 340, 596, 628
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	4 cut(s)	568, 835, 919, 941
Fnu4HI	GCNGC	2 cut(s)	382, 392
FokI	GGATG	4 cut(s)	255, 430, 650, 958
Fsp4HI	GCNGC	2 cut(s)	382, 392
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	2 cut(s)	382, 392
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	4 cut(s)	95, 132, 195, 296
HapII	CCGG	4 cut(s)	129, 133, 372, 840
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	4 cut(s)	572, 839, 923, 945
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	3 cut(s)	301, 487, 556
HpaI	GTTAAC	1 cut(s)	892
HpaII	CCGG	4 cut(s)	129, 133, 372, 840
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	4 cut(s)	40, 486, 698, 819
Hpy8I	GTNNAC	1 cut(s)	892
Hpy99I	CGWCG	9 cut(s)	19, 22, 25, 28, 31, 34, 113, 128, 717
HpyAV	CCTTC	3 cut(s)	90, 106, 557
HpyCH4III	ACNGT	4 cut(s)	163, 728, 896, 983
HpyCH4IV	ACGT	6 cut(s)	29, 123, 290, 469, 712, 888
HpyCH4V	TGCA	3 cut(s)	246, 391, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 996
HpyF3I	CTNAG	7 cut(s)	166, 190, 276, 508, 594, 871, 876
HpySE526I	ACGT	6 cut(s)	29, 123, 290, 469, 712, 888
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	4 cut(s)	572, 839, 923, 945
HspAI	GCGC	1 cut(s)	537
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	892
KspI	CCGCGG	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	47, 53, 673, 814
Lsp1109I	GCAGC	2 cut(s)	393, 403
LweI	GCATC	6 cut(s)	136, 233, 408, 421, 628, 908
MaeII	ACGT	6 cut(s)	29, 123, 290, 469, 712, 888
MalI	GATC	4 cut(s)	49, 55, 675, 816
MboI	GATC	4 cut(s)	47, 53, 673, 814
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	2 cut(s)	631, 644
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	310, 496
MmeI	TCCRAC	1 cut(s)	464
Mox20I	TGGCCA	1 cut(s)	296
MroNI	GCCGGC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	2 cut(s)	180, 891
MslI	CAYNNNNRTG	1 cut(s)	924
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	394, 623
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	4 cut(s)	129, 133, 372, 840
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	3 cut(s)	537, 539, 623
MwoI	GCNNNNNNNGC	2 cut(s)	513, 996
NaeI	GCCGGC	1 cut(s)	130
NdeII	GATC	4 cut(s)	47, 53, 673, 814
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	4 cut(s)	572, 839, 923, 945
NspI	RCATGY	1 cut(s)	839
NspV	TTCGAA	1 cut(s)	628
PagI	TCATGA	2 cut(s)	568, 919
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 26, 29
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	556
PflFI	GACNNNGTC	2 cut(s)	28, 1013
PkrI	GCNGC	2 cut(s)	383, 393
Ple19I	CGATCG	1 cut(s)	50
PleI	GAGTC	2 cut(s)	309, 495
PpsI	GAGTC	2 cut(s)	309, 495
PpuMI	RGGWCCY	1 cut(s)	250
PshAI	GACNNNNGTC	1 cut(s)	981
Psp1406I	AACGTT	1 cut(s)	888
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	250, 341
PspPPI	RGGWCCY	1 cut(s)	250
PsyI	GACNNNGTC	2 cut(s)	28, 1013
PvuI	CGATCG	1 cut(s)	50
RsaI	GTAC	4 cut(s)	619, 827, 844, 881
RsaNI	GTAC	4 cut(s)	618, 826, 843, 880
RseI	CAYNNNNRTG	1 cut(s)	924
SacII	CCGCGG	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	180, 891
SatI	GCNGC	2 cut(s)	382, 392
Sau3AI	GATC	4 cut(s)	47, 53, 673, 814
Sau96I	GGNCC	2 cut(s)	250, 341
SchI	GAGTC	2 cut(s)	310, 496
ScrFI	CCNGG	1 cut(s)	254
SfaNI	GCATC	6 cut(s)	136, 233, 408, 421, 628, 908
SfcI	CTRYAG	1 cut(s)	991
Sfr303I	CCGCGG	1 cut(s)	624
SfuI	TTCGAA	1 cut(s)	628
SgrBI	CCGCGG	1 cut(s)	624
SinI	GGWCC	2 cut(s)	250, 341
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	4 cut(s)	179, 314, 579, 683
SmoI	CTYRAG	4 cut(s)	179, 314, 579, 683
Sse9I	AATT	2 cut(s)	631, 644
SsiI	CCGC	5 cut(s)	149, 394, 514, 621, 623
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	4 cut(s)	163, 728, 896, 983
TaiI	ACGT	6 cut(s)	32, 126, 293, 472, 715, 891
TaqI	TCGA	9 cut(s)	32, 50, 56, 406, 522, 628, 672, 832, 863
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	631, 644
TatI	WGTACW	1 cut(s)	879
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	2 cut(s)	180, 891
Tru9I	TTAA	2 cut(s)	180, 891
TscAI	CASTG	3 cut(s)	733, 901, 939
TseI	GCWGC	2 cut(s)	381, 391
TspDTI	ATGAA	5 cut(s)	761, 804, 844, 930, 1011
TspRI	CASTG	3 cut(s)	733, 901, 939
Tth111I	GACNNNGTC	2 cut(s)	28, 1013
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	250, 341
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	1 cut(s)	839
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.