Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003740.1

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Forward (+)

5191 .. 8147

Gene Structure 2957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003740.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggagagcttaccgacgacgacgaccacgtcgaaatcggacagacgatcgagatcgaagcctattcaaacttccaagccttccatcttcttggccttcttctcctgcgtcgcttggctctacgtcgccggccggttgtggcaagatgcggagaacagaacagtcttagctaatcttcttaagaaaaacttaggccagagaccgatggtgctttcagttgaagataagttagcagtccttggatgcaaggacctggagaggaggattgttgaagctgagatggacttgacgttggccaagagtcaaggctacctcaagaacaacttgaagcaaacctctggtccatttctcgccgttattggagtttttaccggatttggcagccgtttgcagcggaatgggtttcgagggtcttggatgcctaaagtggatgctttgaaaaaacttgaagaaagaggagtagtcatacgttttgtgattggtcgaagtcccaacaaaggcgatagcttagaccgcaatattgatgaggaaagtcgcgcgacacaggatttcttgattcttaagcaaccattaagtattttggttaggcctgagcgttcgaaacgctatgtgaaacaagttggtgattgcaacatcacctggggcgccatcaccatgatggacgctatccatggcgtgatggatatggactacgccagccctaggctgatggtggacggaggcggtgccctaggcaacagcgtcggtcacacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

251

Amino Acids

27.94

Weight (kDa)

9.73

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AccB1I	GGYRCC	2 cut(s)	644, 725
AccII	CGCG	2 cut(s)	537, 539
AciI	CCGC	4 cut(s)	149, 394, 514, 723
AcoI	YGGCCR	2 cut(s)	130, 294
AcyI	GRCGYC	1 cut(s)	645
AfiI	CCNNNNNNNGG	2 cut(s)	497, 702
AflII	CTTAAG	2 cut(s)	179, 560
AgsI	TTSAA	6 cut(s)	68, 221, 272, 328, 439, 449
AjiI	CACGTC	1 cut(s)	30
AjnI	CCWGG	2 cut(s)	252, 638
AluBI	AGCT	4 cut(s)	9, 170, 275, 507
AluI	AGCT	4 cut(s)	9, 170, 275, 507
Alw26I	GTCTC	1 cut(s)	193
AoxI	GGCC	5 cut(s)	93, 130, 193, 294, 587
ApeKI	GCWGC	2 cut(s)	381, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspA2I	CCTAGG	2 cut(s)	701, 730
AspLEI	GCGC	2 cut(s)	539, 647
AspS9I	GGNCC	2 cut(s)	250, 341
AsuHPI	GGTGA	3 cut(s)	628, 635, 643
AsuII	TTCGAA	1 cut(s)	599
AvaII	GGWCC	2 cut(s)	250, 341
AvrII	CCTAGG	2 cut(s)	701, 730
BaeGI	GKGCMC	1 cut(s)	730
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	644, 725
BbvI	GCAGC	2 cut(s)	393, 403
BccI	CCATC	7 cut(s)	92, 199, 274, 652, 656, 673, 703
BceAI	ACGGC	2 cut(s)	338, 369
BcgI	CGANNNNNNTGC	1 cut(s)	724
BciT130I	CCWGG	2 cut(s)	254, 640
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	702, 731
BfoI	RGCGCY	1 cut(s)	648
BfrI	CTTAAG	2 cut(s)	179, 560
BisI	GCNGC	2 cut(s)	382, 392
BlnI	CCTAGG	2 cut(s)	701, 730
BlsI	GCNGC	2 cut(s)	383, 393
Bme1390I	CCNGG	2 cut(s)	254, 640
Bme18I	GGWCC	2 cut(s)	250, 341
BmgBI	CACGTC	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	250, 341
BmiI	GGNNCC	2 cut(s)	646, 727
BmrFI	CCNGG	2 cut(s)	254, 640
BmsI	GCATC	4 cut(s)	136, 233, 408, 421
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	5 cut(s)	238, 639, 670, 701, 730
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 702
Bse118I	RCCGGY	2 cut(s)	128, 132
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	254, 640
BseDI	CCNNGG	5 cut(s)	238, 639, 670, 701, 730
BseGI	GGATG	3 cut(s)	248, 423, 436
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	497, 702
BseMII	CTCAG	2 cut(s)	267, 582
BseRI	GAGGAG	2 cut(s)	274, 471
BseSI	GKGCMC	1 cut(s)	730
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	393, 403
Bsh1236I	CGCG	2 cut(s)	537, 539
Bsh1285I	CGRYCG	2 cut(s)	50, 133
BshFI	GGCC	5 cut(s)	95, 132, 195, 296, 589
BshNI	GGYRCC	2 cut(s)	644, 725
BsiEI	CGRYCG	2 cut(s)	50, 133
BsiSI	CCGG	3 cut(s)	129, 133, 372
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	497, 702
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	5 cut(s)	95, 132, 195, 296, 589
Bso31I	GGTCTC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	2 cut(s)	47, 53
Bsp19I	CCATGG	1 cut(s)	670
BspACI	CCGC	4 cut(s)	149, 394, 514, 723
BspANI	GGCC	5 cut(s)	95, 132, 195, 296, 589
BspCNI	CTCAG	2 cut(s)	268, 583
BspFNI	CGCG	2 cut(s)	537, 539
BspLI	GGNNCC	2 cut(s)	646, 727
BspT104I	TTCGAA	1 cut(s)	599
BspT107I	GGYRCC	2 cut(s)	644, 725
BspTI	CTTAAG	2 cut(s)	179, 560
BspTNI	GGTCTC	1 cut(s)	193
BsrFI	RCCGGY	2 cut(s)	128, 132
BssAI	RCCGGY	2 cut(s)	128, 132
BssECI	CCNNGG	5 cut(s)	238, 639, 670, 701, 730
BssMI	GATC	2 cut(s)	47, 53
BssNI	GRCGYC	1 cut(s)	645
BssT1I	CCWWGG	4 cut(s)	238, 670, 701, 730
Bst2UI	CCWGG	2 cut(s)	254, 640
Bst4CI	ACNGT	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	645
BstAFI	CTTAAG	2 cut(s)	179, 560
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	130, 697
BstDEI	CTNAG	6 cut(s)	166, 190, 276, 508, 591, 753
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	3 cut(s)	248, 423, 436
BstFNI	CGCG	2 cut(s)	537, 539
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	2 cut(s)	539, 647
BstKTI	GATC	2 cut(s)	50, 56
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	47, 53
BstMCI	CGRYCG	2 cut(s)	50, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNI	CCWGG	2 cut(s)	254, 640
BstSCI	CCNGG	2 cut(s)	252, 638
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	2 cut(s)	537, 539
BstV1I	GCAGC	2 cut(s)	393, 403
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	5 cut(s)	95, 132, 195, 296, 589
BtgI	CCRYGG	1 cut(s)	670
BtrI	CACGTC	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	248, 423, 436
Cac8I	GCNNGC	2 cut(s)	130, 697
CfoI	GCGC	2 cut(s)	539, 647
Cfr10I	RCCGGY	2 cut(s)	128, 132
Cfr13I	GGNCC	2 cut(s)	250, 341
CseI	GACGC	3 cut(s)	97, 671, 730
CviAII	CATG	2 cut(s)	655, 671
DdeI	CTNAG	6 cut(s)	166, 190, 276, 508, 591, 753
DinI	GGCGCC	1 cut(s)	646
DpnI	GATC	2 cut(s)	49, 55
DpnII	GATC	2 cut(s)	47, 53
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	130, 294
EagI	CGGCCG	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	4 cut(s)	238, 670, 701, 730
Eco147I	AGGCCT	1 cut(s)	589
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	250, 341
Eco52I	CGGCCG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	252, 638
EcoT14I	CCWWGG	4 cut(s)	238, 670, 701, 730
EgeI	GGCGCC	1 cut(s)	646
EheI	GGCGCC	1 cut(s)	646
ErhI	CCWWGG	4 cut(s)	238, 670, 701, 730
FaeI	CATG	2 cut(s)	658, 674
FaiI	YATR	5 cut(s)	467, 609, 656, 672, 686
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 308, 340
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	2 cut(s)	654, 670
Fnu4HI	GCNGC	2 cut(s)	382, 392
FokI	GGATG	3 cut(s)	255, 430, 443
Fsp4HI	GCNGC	2 cut(s)	382, 392
FspBI	CTAG	2 cut(s)	702, 731
GlaI	GCGC	2 cut(s)	538, 646
GluI	GCNGC	2 cut(s)	382, 392
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	5 cut(s)	95, 132, 195, 296, 589
HapII	CCGG	3 cut(s)	129, 133, 372
HgaI	GACGC	3 cut(s)	97, 671, 730
HhaI	GCGC	2 cut(s)	539, 647
Hin1I	GRCGYC	1 cut(s)	645
Hin1II	CATG	2 cut(s)	658, 674
Hin6I	GCGC	2 cut(s)	537, 645
HinP1I	GCGC	2 cut(s)	537, 645
HinfI	GANTC	2 cut(s)	301, 556
HpaII	CCGG	3 cut(s)	129, 133, 372
HphI	GGTGA	3 cut(s)	628, 635, 643
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	51, 316, 553
Hpy8I	GTNNAC	1 cut(s)	715
Hpy99I	CGWCG	7 cut(s)	19, 22, 25, 34, 113, 128, 746
HpyAV	CCTTC	2 cut(s)	90, 106
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	4 cut(s)	29, 123, 290, 469
HpyCH4V	TGCA	3 cut(s)	246, 391, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	6 cut(s)	166, 190, 276, 508, 591, 753
HpySE526I	ACGT	4 cut(s)	29, 123, 290, 469
Hsp92I	GRCGYC	1 cut(s)	645
Hsp92II	CATG	2 cut(s)	658, 674
HspAI	GCGC	2 cut(s)	537, 645
KasI	GGCGCC	1 cut(s)	644
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	47, 53
Lsp1109I	GCAGC	2 cut(s)	393, 403
LweI	GCATC	4 cut(s)	136, 233, 408, 421
MaeI	CTAG	2 cut(s)	702, 731
MaeII	ACGT	4 cut(s)	29, 123, 290, 469
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	2 cut(s)	49, 55
MboI	GATC	2 cut(s)	47, 53
MboII	GAAGA	5 cut(s)	79, 91, 167, 233, 461
MhlI	GDGCHC	1 cut(s)	730
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
Mly113I	GGCGCC	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	8 cut(s)	252, 255, 323, 346, 401, 449, 520, 713
Mox20I	TGGCCA	1 cut(s)	296
MroNI	GCCGGC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	3 cut(s)	180, 561, 572
MslI	CAYNNNNRTG	2 cut(s)	653, 656
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	394
MspCI	CTTAAG	2 cut(s)	179, 560
MspI	CCGG	3 cut(s)	129, 133, 372
MspR9I	CCNGG	2 cut(s)	254, 640
MvaI	CCWGG	2 cut(s)	254, 640
MvnI	CGCG	2 cut(s)	537, 539
MwoI	GCNNNNNNNGC	1 cut(s)	513
NaeI	GCCGGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	645
NcoI	CCATGG	1 cut(s)	670
NdeII	GATC	2 cut(s)	47, 53
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	658, 674
NlaIV	GGNNCC	2 cut(s)	646, 727
NmuCI	GTSAC	1 cut(s)	746
NspV	TTCGAA	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 29
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	556
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	383, 393
Ple19I	CGATCG	1 cut(s)	50
PleI	GAGTC	1 cut(s)	309
PluTI	GGCGCC	1 cut(s)	648
PpsI	GAGTC	1 cut(s)	309
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	252, 638
PspGI	CCWGG	2 cut(s)	252, 638
PspN4I	GGNNCC	2 cut(s)	646, 727
PspPI	GGNCC	2 cut(s)	250, 341
PspPPI	RGGWCCY	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	50
RseI	CAYNNNNRTG	2 cut(s)	653, 656
SaqAI	TTAA	3 cut(s)	180, 561, 572
SatI	GCNGC	2 cut(s)	382, 392
Sau3AI	GATC	2 cut(s)	47, 53
Sau96I	GGNCC	2 cut(s)	250, 341
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	254, 640
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	4 cut(s)	136, 233, 408, 421
SfoI	GGCGCC	1 cut(s)	646
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	2 cut(s)	250, 341
SmiMI	CAYNNNNRTG	2 cut(s)	653, 656
SmlI	CTYRAG	3 cut(s)	179, 314, 560
SmoI	CTYRAG	3 cut(s)	179, 314, 560
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	4 cut(s)	149, 394, 514, 723
SspDI	GGCGCC	1 cut(s)	644
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	702, 731
StuI	AGGCCT	1 cut(s)	589
StyD4I	CCNGG	2 cut(s)	252, 638
StyI	CCWWGG	4 cut(s)	238, 670, 701, 730
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	4 cut(s)	32, 126, 293, 472
TaqI	TCGA	6 cut(s)	32, 50, 56, 406, 484, 599
TaqII	GACCGA	2 cut(s)	217, 734
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	3 cut(s)	180, 561, 572
Tru9I	TTAA	3 cut(s)	180, 561, 572
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	2 cut(s)	381, 391
Tsp45I	GTSAC	1 cut(s)	746
TspGWI	ACGGA	1 cut(s)	732
Tth111I	GACNNNGTC	1 cut(s)	28
Vha464I	CTTAAG	2 cut(s)	179, 560
VpaK11BI	GGWCC	2 cut(s)	250, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmaJI	CCTAGG	2 cut(s)	701, 730
XspI	CTAG	2 cut(s)	702, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.