Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Forward (+)

9295390 .. 9299920

Gene Structure 4531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1128400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGGGTTTGCCGACGACGACGAAATCAGATCGGCGATGGCGATCGAAGCCCCTGCAGACCTCCAAGCCATCCATTCTCATGGCATTCTTCTCCTGCGTCGCTTGGCTCTACGTCGCCGGCCGGTTGTGGCAGGATGCGGAGAACAGAACAGTGCTTTCTAATCTTCTAAAGAAGAACTTGGGCCAGAGACCAAAGGTTCTTACGGTAGAAGACAAGTTAGCAGTGCTTGGATGCAAGGACCTGGAGAGGAGGATTGTGGAAGCTGAGATGGACTTGACACTGGCCAAGAGTCAAGGGTACCTCAAGAACCACTTGCAACAAAAGGCGTCTTCTTCTGGCCGATTGCTTGCTGTTGTTGGAGTTTATACTGGATTTGGTAGTCATTTAAACCGAAATATGTTTAGAGGGTCTTGGATGCCTAAAGGTGATGCTTTGAGGAAGCTAGAAGAAAGAGGAGTAGTTATACGCTTTGTAATTGGTCGGAGTGCCAATCGGGGTGATAGCTTAGATCGGAATATTGATAAGGAAAGTGGTTCGACAAAGGATTTCTTAATTCTTGAAGGTCATGAGGAGGCTCAGGAAGAGATGCCCAAGAAAGCAAAGTTCTTCTTCAGTACTGCGGTTCAGAATTGGGATGCTGAGTTTTATGTCAAAGTTGATGACAATATCAATCTTGATCTTGAGGGGCTAATTGGACTTCTTGAACATCGTCGTGCTCAAGATGGTGCTTATATCGGATGCATGAAGTCAGGAGATGTGATTTCTGAAGAGGGAAAGTCTTGGTATGAACCTGACTGGTGGAAATTTGGGGATCAGAAATCGTACTTCCGACATGCAGGTGGTTCCCTCATTATACTATCCAAGAACTTAGCTCAGTATATAAACATAAACAGTGCATCATTGAAGACTTATGCTCATGATGATGTATCAGTGGGTTCATGGATGATGGGTATCCAAGCCACTTATATAGATGACAACCGCCTTTGCTGCGGTAGCATTAGACAAGATAAGGTGTGTTCTTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

344

Amino Acids

38.72

Weight (kDa)

8.74

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	22 - 99	7.8e-07	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	131 - 325	1.4e-30	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	830
Acc36I	ACCTGC	1 cut(s)	830
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	300
AciI	CCGC	4 cut(s)	140, 623, 982, 993
AclWI	GGATC	1 cut(s)	822
AcoI	YGGCCR	3 cut(s)	121, 285, 340
AcsI	RAATTY	1 cut(s)	806
AcuI	CTGAAG	2 cut(s)	598, 789
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	3 cut(s)	302, 619, 827
AgsI	TTSAA	3 cut(s)	563, 707, 907
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	266, 445, 507, 875
AluI	AGCT	4 cut(s)	266, 445, 507, 875
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	822
AoxI	GGCC	4 cut(s)	121, 184, 285, 340
ApeKI	GCWGC	1 cut(s)	990
ApoI	RAATTY	1 cut(s)	806
Asp718I	GGTACC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	184, 241
AsuHPI	GGTGA	2 cut(s)	440, 512
AvaII	GGWCC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	300
BbsI	GAAGAC	3 cut(s)	219, 324, 914
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	977
BccI	CCATC	5 cut(s)	33, 79, 265, 719, 943
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	965
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	965
BisI	GCNGC	1 cut(s)	991
BlsI	GCNGC	1 cut(s)	992
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	184, 241
BmiI	GGNNCC	2 cut(s)	302, 847
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	8 cut(s)	127, 224, 408, 421, 579, 628, 731, 908
BpiI	GAAGAC	3 cut(s)	219, 324, 914
BpmI	CTGGAG	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	3 cut(s)	290, 704, 705
BsaBI	GATNNNNATC	2 cut(s)	43, 953
BsaHI	GRCGYC	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	184
Bse118I	RCCGGY	2 cut(s)	119, 123
Bse1I	ACTGG	3 cut(s)	288, 376, 803
Bse8I	GATNNNNATC	2 cut(s)	43, 953
BseBI	CCWGG	1 cut(s)	245
BseGI	GGATG	7 cut(s)	71, 142, 239, 423, 643, 746, 951
BseJI	GATNNNNATC	2 cut(s)	43, 953
BseMII	CTCAG	4 cut(s)	258, 593, 633, 890
BseNI	ACTGG	3 cut(s)	288, 376, 803
BseRI	GAGGAG	3 cut(s)	265, 471, 587
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	977
Bsh1285I	CGRYCG	2 cut(s)	47, 124
BshFI	GGCC	4 cut(s)	123, 186, 287, 342
BshNI	GGYRCC	1 cut(s)	300
BsiEI	CGRYCG	2 cut(s)	47, 124
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	2 cut(s)	120, 124
BsmAI	GTCTC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	123, 186, 287, 342
Bso31I	GGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	5 cut(s)	31, 44, 511, 679, 814
BspACI	CCGC	4 cut(s)	140, 623, 982, 993
BspANI	GGCC	4 cut(s)	123, 186, 287, 342
BspCNI	CTCAG	4 cut(s)	259, 592, 634, 889
BspHI	TCATGA	2 cut(s)	568, 919
BspLI	GGNNCC	2 cut(s)	302, 847
BspMAI	CTGCAG	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	830
BspPI	GGATC	1 cut(s)	822
BspT107I	GGYRCC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	119, 123
BsrI	ACTGG	3 cut(s)	288, 376, 803
BssAI	RCCGGY	2 cut(s)	119, 123
BssMI	GATC	5 cut(s)	31, 44, 511, 679, 814
BssNI	GRCGYC	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	154, 208, 896
Bst6I	CTCTTC	2 cut(s)	579, 765
BstACI	GRCGYC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	121, 351
BstDEI	CTNAG	6 cut(s)	267, 508, 579, 642, 871, 876
BstF5I	GGATG	7 cut(s)	71, 142, 239, 423, 643, 746, 951
BstKTI	GATC	5 cut(s)	34, 47, 514, 682, 817
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	5 cut(s)	31, 44, 511, 679, 814
BstMCI	CGRYCG	2 cut(s)	47, 124
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 990, 996
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	839
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	977
BstV2I	GAAGAC	3 cut(s)	219, 324, 914
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	965
BsuRI	GGCC	4 cut(s)	123, 186, 287, 342
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	7 cut(s)	71, 142, 239, 423, 643, 746, 951
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	5 cut(s)	159, 231, 281, 901, 939
BveI	ACCTGC	1 cut(s)	830
Cac8I	GCNNGC	2 cut(s)	121, 351
CciI	TCATGA	2 cut(s)	568, 919
Cfr10I	RCCGGY	2 cut(s)	119, 123
Cfr13I	GGNCC	2 cut(s)	184, 241
CseI	GACGC	2 cut(s)	88, 318
Csp6I	GTAC	3 cut(s)	301, 618, 826
CviAII	CATG	6 cut(s)	82, 569, 745, 836, 920, 942
CviQI	GTAC	3 cut(s)	301, 618, 826
DdeI	CTNAG	6 cut(s)	267, 508, 579, 642, 871, 876
DpnI	GATC	5 cut(s)	33, 46, 513, 681, 816
DpnII	GATC	5 cut(s)	31, 44, 511, 679, 814
DraI	TTTAAA	1 cut(s)	390
EaeI	YGGCCR	3 cut(s)	121, 285, 340
EagI	CGGCCG	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	579, 765
EarI	CTCTTC	2 cut(s)	579, 765
EclXI	CGGCCG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	241
Eco52I	CGGCCG	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	598, 789
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	746
FaeI	CATG	6 cut(s)	85, 572, 748, 839, 923, 945
FalI	AAGNNNNNCTT	8 cut(s)	164, 196, 299, 331, 536, 568, 596, 628
FatI	CATG	6 cut(s)	81, 568, 744, 835, 919, 941
Fnu4HI	GCNGC	1 cut(s)	991
FokI	GGATG	7 cut(s)	58, 149, 246, 430, 650, 753, 958
Fsp4HI	GCNGC	1 cut(s)	991
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	1 cut(s)	991
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	4 cut(s)	123, 186, 287, 342
HapII	CCGG	2 cut(s)	120, 124
HgaI	GACGC	2 cut(s)	88, 318
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	6 cut(s)	85, 572, 748, 839, 923, 945
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	120, 124
HphI	GGTGA	2 cut(s)	440, 512
Hpy188I	TCNGA	8 cut(s)	31, 486, 516, 630, 740, 769, 819, 833
Hpy99I	CGWCG	6 cut(s)	19, 22, 25, 104, 119, 717
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	3 cut(s)	154, 208, 896
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	6 cut(s)	58, 237, 319, 744, 839, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 990, 996
HpyF3I	CTNAG	6 cut(s)	267, 508, 579, 642, 871, 876
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	6 cut(s)	85, 572, 748, 839, 923, 945
KpnI	GGTACC	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	31, 44, 511, 679, 814
Lsp1109I	GCAGC	1 cut(s)	977
LweI	GCATC	8 cut(s)	127, 224, 408, 421, 579, 628, 731, 908
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	114
MalI	GATC	5 cut(s)	33, 46, 513, 681, 816
MboI	GATC	5 cut(s)	31, 44, 511, 679, 814
MhlI	GDGCHC	1 cut(s)	721
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	5 cut(s)	477, 555, 631, 693, 806
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	3 cut(s)	340, 464, 856
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	746
MroNI	GCCGGC	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	389, 554
MslI	CAYNNNNRTG	4 cut(s)	80, 714, 840, 924
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	2 cut(s)	120, 124
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	49, 990, 996
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	5 cut(s)	31, 44, 511, 679, 814
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	6 cut(s)	85, 572, 748, 839, 923, 945
NlaIV	GGNNCC	2 cut(s)	302, 847
NsiI	ATGCAT	1 cut(s)	746
NspI	RCATGY	1 cut(s)	839
PagI	TCATGA	2 cut(s)	568, 919
PaqCI	CACCTGC	1 cut(s)	830
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	992
Ple19I	CGATCG	1 cut(s)	47
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	302, 847
PspPI	GGNCC	2 cut(s)	184, 241
PspPPI	RGGWCCY	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	60
PvuI	CGATCG	1 cut(s)	47
RsaI	GTAC	3 cut(s)	302, 619, 827
RsaNI	GTAC	3 cut(s)	301, 618, 826
RseI	CAYNNNNRTG	4 cut(s)	80, 714, 840, 924
SaqAI	TTAA	2 cut(s)	389, 554
SatI	GCNGC	1 cut(s)	991
Sau3AI	GATC	5 cut(s)	31, 44, 511, 679, 814
Sau96I	GGNCC	2 cut(s)	184, 241
ScaI	AGTACT	1 cut(s)	619
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	8 cut(s)	127, 224, 408, 421, 579, 628, 731, 908
SfcI	CTRYAG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	4 cut(s)	80, 714, 840, 924
SmlI	CTYRAG	3 cut(s)	305, 683, 720
SmoI	CTYRAG	3 cut(s)	305, 683, 720
Sse9I	AATT	5 cut(s)	477, 555, 631, 693, 806
SsiI	CCGC	4 cut(s)	140, 623, 982, 993
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	154, 208, 896
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	47, 539
TasI	AATT	5 cut(s)	477, 555, 631, 693, 806
TatI	WGTACW	1 cut(s)	617
Tru1I	TTAA	2 cut(s)	389, 554
Tru9I	TTAA	2 cut(s)	389, 554
TscAI	CASTG	5 cut(s)	159, 231, 288, 901, 939
TseI	GCWGC	1 cut(s)	990
TspDTI	ATGAA	3 cut(s)	761, 804, 930
TspRI	CASTG	5 cut(s)	159, 231, 288, 901, 939
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	806
XceI	RCATGY	1 cut(s)	839
XspI	CTAG	1 cut(s)	446
ZrmI	AGTACT	1 cut(s)	619
Zsp2I	ATGCAT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.