Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Forward (+)

10727866 .. 10731964

Gene Structure 4099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGAGCTTACCGACGACGACGACGACGACGACGACGTCGAAATCGGACAGACGATCGAGATCGAAGCCTATTCAAACTTCCAAGCCTTCCATCTTCATGGCCTTCTTCTCCTGCGTCGCTTGGCTCTACGTCGCCGGCCGGTTGTGGCAAGATGCGGAGAACAGAACAGTCTTGGCTAATCTTCTTAAGAAAAACTTAGGCCAGAGACCGATGGTGCTTTCAGTTGAAGATAAGTTAGCAGTCCTTGGATGCAAGGACCTGGAGAGGAGGATTGTTGAAGCTGAGATGGACTTGACTTTGGCCAAGAGTCAAGGCTACCTCAAGAACAACTTGAAACAAACCTCTGGTCCATTTCTCGCCGTTATTGGAGTTTTTACCGGATTTGGCAGCCGTTTGCAGCGCAATGGGTTTAGAGGGTCTTGGATGCCTAAAGTTGATGCTTTGAAAAAACTTGAAGAAAGAGGAGTAGTCATACGTTTTGTGATTGGTCGGAGTCCCAACAAAGGTGATAGCTTAGACCGCAATATTGATGCGGAAAGTCGCGCGACACAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAGTTGCCTAAGAAAGCAAAGTTCTTCTTCAGTACCGCAGTTCGAAATTGGGATGCTGAATTTTATGTAAAAGTTGATGACAATATCGATCTTGACCTTGAGGGGATAATCGGACTTCTTGAAAAACGTCGTGGTCAAGACAGTGCTTATATTGGTTGTATGAAGTCAGGAGATGTCATTGCTGAAGAGTACATACTCCTCTATCCCTATACCTTTGTGCAACGTTATTGTATTCTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

280

Amino Acids

31.6

Weight (kDa)

8.76

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	28 - 105	2.2e-06	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	134 - 261	6.2e-18	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	37
AatII	GACGTC	1 cut(s)	41
AccII	CGCG	2 cut(s)	546, 548
AciI	CCGC	4 cut(s)	158, 523, 536, 630
AclI	AACGTT	1 cut(s)	817
AcoI	YGGCCR	2 cut(s)	139, 303
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	2 cut(s)	607, 798
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	628, 785
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	8 cut(s)	77, 230, 281, 337, 448, 458, 572, 716
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	3 cut(s)	9, 284, 516
AluI	AGCT	3 cut(s)	9, 284, 516
Alw26I	GTCTC	1 cut(s)	202
AoxI	GGCC	4 cut(s)	102, 139, 202, 303
ApeKI	GCWGC	2 cut(s)	390, 400
ApoI	RAATTY	1 cut(s)	653
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AspLEI	GCGC	2 cut(s)	405, 548
AspS9I	GGNCC	2 cut(s)	259, 350
AsuHPI	GGTGA	1 cut(s)	521
AsuII	TTCGAA	1 cut(s)	637
AvaII	GGWCC	2 cut(s)	259, 350
BalI	TGGCCA	1 cut(s)	305
BarI	GAAGNNNNNNTAC	2 cut(s)	771, 803
BbvI	GCAGC	2 cut(s)	402, 412
BccI	CCATC	3 cut(s)	101, 208, 283
BceAI	ACGGC	2 cut(s)	347, 378
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	202
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	391, 401
BlsI	GCNGC	2 cut(s)	392, 402
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	259, 350
BmgT120I	GGNCC	2 cut(s)	259, 350
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	6 cut(s)	145, 242, 417, 430, 523, 637
BpmI	CTGGAG	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	3 cut(s)	308, 573, 713
Bsa29I	ATCGAT	1 cut(s)	681
BsaBI	GATNNNNATC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse118I	RCCGGY	2 cut(s)	137, 141
Bse3DI	GCAATG	2 cut(s)	412, 771
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	263
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	3 cut(s)	257, 432, 652
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMI	GCAATG	2 cut(s)	412, 771
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	4 cut(s)	283, 480, 596, 782
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	402, 412
Bsh1236I	CGCG	2 cut(s)	546, 548
Bsh1285I	CGRYCG	2 cut(s)	59, 142
BshFI	GGCC	4 cut(s)	104, 141, 204, 305
BshVI	ATCGAT	1 cut(s)	681
BsiEI	CGRYCG	2 cut(s)	59, 142
BsiSI	CCGG	3 cut(s)	138, 142, 381
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	4 cut(s)	104, 141, 204, 305
Bso31I	GGTCTC	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	56, 62, 682
BspACI	CCGC	4 cut(s)	158, 523, 536, 630
BspANI	GGCC	4 cut(s)	104, 141, 204, 305
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	2 cut(s)	546, 548
BspHI	TCATGA	1 cut(s)	577
BspT104I	TTCGAA	1 cut(s)	637
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	412, 771
BsrFI	RCCGGY	2 cut(s)	137, 141
BssAI	RCCGGY	2 cut(s)	137, 141
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	56, 62, 682
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	172, 737
Bst6I	CTCTTC	2 cut(s)	588, 774
BstACI	GRCGYC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	188
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	4 cut(s)	199, 285, 517, 603
BstF5I	GGATG	3 cut(s)	257, 432, 652
BstFNI	CGCG	2 cut(s)	546, 548
BstHHI	GCGC	2 cut(s)	405, 548
BstKTI	GATC	3 cut(s)	59, 65, 685
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	56, 62, 682
BstMCI	CGRYCG	2 cut(s)	59, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	522
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstUI	CGCG	2 cut(s)	546, 548
BstV1I	GCAGC	2 cut(s)	402, 412
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstZI	CGGCCG	1 cut(s)	139
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	4 cut(s)	104, 141, 204, 305
BsuTUI	ATCGAT	1 cut(s)	681
BtsCI	GGATG	3 cut(s)	257, 432, 652
BtsIMutI	CAGTG	1 cut(s)	742
Cac8I	GCNNGC	1 cut(s)	139
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	2 cut(s)	405, 548
Cfr10I	RCCGGY	2 cut(s)	137, 141
Cfr13I	GGNCC	2 cut(s)	259, 350
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	627, 784
CviAII	CATG	2 cut(s)	100, 578
CviQI	GTAC	2 cut(s)	627, 784
DdeI	CTNAG	4 cut(s)	199, 285, 517, 603
DpnI	GATC	3 cut(s)	58, 64, 684
DpnII	GATC	3 cut(s)	56, 62, 682
DrdI	GACNNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	2 cut(s)	139, 303
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	588, 774
EarI	CTCTTC	2 cut(s)	588, 774
EclXI	CGGCCG	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	259, 350
Eco52I	CGGCCG	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	607, 798
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	103, 581
FaiI	YATR	8 cut(s)	101, 476, 579, 660, 744, 755, 788, 804
FalI	AAGNNNNNCTT	6 cut(s)	182, 214, 317, 349, 605, 637
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	2 cut(s)	99, 577
Fnu4HI	GCNGC	2 cut(s)	391, 401
FokI	GGATG	3 cut(s)	264, 439, 659
Fsp4HI	GCNGC	2 cut(s)	391, 401
GlaI	GCGC	2 cut(s)	404, 547
GluI	GCNGC	2 cut(s)	391, 401
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	4 cut(s)	104, 141, 204, 305
HapII	CCGG	3 cut(s)	138, 142, 381
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	2 cut(s)	405, 548
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	103, 581
Hin6I	GCGC	2 cut(s)	403, 546
HinP1I	GCGC	2 cut(s)	403, 546
HinfI	GANTC	3 cut(s)	310, 496, 565
HpaII	CCGG	3 cut(s)	138, 142, 381
HphI	GGTGA	1 cut(s)	521
Hpy188I	TCNGA	3 cut(s)	49, 495, 707
HpyAV	CCTTC	3 cut(s)	99, 115, 566
HpyCH4III	ACNGT	2 cut(s)	172, 737
HpyCH4IV	ACGT	5 cut(s)	38, 132, 478, 721, 817
HpyCH4V	TGCA	3 cut(s)	255, 400, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	522
HpyF3I	CTNAG	4 cut(s)	199, 285, 517, 603
HpySE526I	ACGT	5 cut(s)	38, 132, 478, 721, 817
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	103, 581
HspAI	GCGC	2 cut(s)	403, 546
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	56, 62, 682
Lsp1109I	GCAGC	2 cut(s)	402, 412
LweI	GCATC	6 cut(s)	145, 242, 417, 430, 523, 637
MaeII	ACGT	5 cut(s)	38, 132, 478, 721, 817
MalI	GATC	3 cut(s)	58, 64, 684
MboI	GATC	3 cut(s)	56, 62, 682
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	2 cut(s)	640, 653
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	2 cut(s)	319, 505
MmeI	TCCRAC	1 cut(s)	473
Mox20I	TGGCCA	1 cut(s)	305
MroNI	GCCGGC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	3 cut(s)	138, 142, 381
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	2 cut(s)	546, 548
MwoI	GCNNNNNNNGC	1 cut(s)	522
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	3 cut(s)	56, 62, 682
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	2 cut(s)	103, 581
NspV	TTCGAA	1 cut(s)	637
PagI	TCATGA	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	6 cut(s)	23, 26, 29, 32, 35, 38
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	565
PflFI	GACNNNGTC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	392, 402
Ple19I	CGATCG	1 cut(s)	59
PleI	GAGTC	2 cut(s)	318, 504
PpsI	GAGTC	2 cut(s)	318, 504
PpuMI	RGGWCCY	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	817
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	259, 350
PspPPI	RGGWCCY	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	37
PvuI	CGATCG	1 cut(s)	59
RsaI	GTAC	2 cut(s)	628, 785
RsaNI	GTAC	2 cut(s)	627, 784
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	391, 401
Sau3AI	GATC	3 cut(s)	56, 62, 682
Sau96I	GGNCC	2 cut(s)	259, 350
SchI	GAGTC	2 cut(s)	319, 505
ScrFI	CCNGG	1 cut(s)	263
SfaNI	GCATC	6 cut(s)	145, 242, 417, 430, 523, 637
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	2 cut(s)	259, 350
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	4 cut(s)	188, 323, 588, 692
SmoI	CTYRAG	4 cut(s)	188, 323, 588, 692
Sse9I	AATT	2 cut(s)	640, 653
SsiI	CCGC	4 cut(s)	158, 523, 536, 630
SspI	AATATT	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	172, 737
TaiI	ACGT	5 cut(s)	41, 135, 481, 724, 820
TaqI	TCGA	5 cut(s)	41, 59, 65, 637, 681
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	640, 653
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	2 cut(s)	390, 400
TspDTI	ATGAA	2 cut(s)	88, 770
TspRI	CASTG	1 cut(s)	742
Tth111I	GACNNNGTC	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	259, 350
XapI	RAATTY	1 cut(s)	653
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.