Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Forward (+)

10837290 .. 10841560

Gene Structure 4271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGAGCTTACCGACGACGACGACGACGACGACGTCGAAATCGGACAGACGATCGAGATCGAAGCCTATTCAAACTTCCAAGCCTTCCATTTTCTTGGCCTTCTTCTCCTGCGTCGCTTGGCTCTACGTCGCCGGCCGGTTGTGGCAAGATGCGGAGAACAGAACAGTCTTGGCTAATCTTCTTAAGAAAAACTTAGGCCAGAGACCGATGGTGCTTTCAGTTGAAGATAAGTTAGCAGTCCTTGGATGCAAGGACCTGGAGAGGAGGATTGTTGAAGCTGAGATGGACTTGACTTTGGCCAAGAGTCAAGGCTACCTCAAGAACAACTTGAAGCAAGCCTCTGGTCCATTTCTCGCCGTTATTGGAGTTTTTACCGGATTTGGCAGCCGTTTGCAGCGGAATGGGTTTAGAGGGTCTTGGATGCCTAAAGTTGATGCTTTGAAAAAACTTGAAGAAAGAGGAGTAGTCATACGTTTTGTGATTGGTCGGAGTCCCAACAAAGGTGATAGCTTAGACCGCAATATTGATGAGGAAAGTCGCGCGACACAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAGTTGCCTAAGAAAGCAAAGTTCTTCTTCAGTACCGCAGTTCGAAATTGGGATGCTGAATTTTATGTAAAAGTTGATGACAATATCGATCTTGACCTTGAGGGGATAATTGGACTTCTTGAAAAACGTCGTGGTCAAGACAGTGCTTATATTGGTTGTATGAAGTCAGGAGATGTGATTGCTGAAGAGGGAAAGTCTTGGTATGAACCTGACTGGTGGAAGTTTGGCGATCAGAAATCGTACTTTCGACATGCCGGTACTTCACTCTTCATACTATCGAAGAACTTAGCTCAGTACATAAACGTTAACAGTGCATCTTTGAAGACTTATGCTCATGACGATGTATCAGTGGGTTCATGGATGATGGGTATCCAAGCGACTTATATTGATGACAACCGTCTTTGCTGTAGTAGCATTAGACAAGACAAGGTCTGTTCATTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

345

Amino Acids

38.93

Weight (kDa)

8.4

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	27 - 104	1.5e-06	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	133 - 327	6e-31	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
AatII	GACGTC	1 cut(s)	38
AccII	CGCG	2 cut(s)	543, 545
AciI	CCGC	4 cut(s)	155, 400, 520, 627
AclI	AACGTT	1 cut(s)	894
AcoI	YGGCCR	2 cut(s)	136, 300
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	2 cut(s)	604, 795
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	4 cut(s)	625, 833, 850, 887
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	9 cut(s)	74, 227, 278, 334, 445, 455, 569, 713, 913
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	5 cut(s)	9, 281, 513, 881, 1034
AluI	AGCT	5 cut(s)	9, 281, 513, 881, 1034
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	4 cut(s)	99, 136, 199, 300
ApeKI	GCWGC	2 cut(s)	387, 397
ApoI	RAATTY	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	256, 347
AsuHPI	GGTGA	1 cut(s)	518
AsuII	TTCGAA	1 cut(s)	634
AvaII	GGWCC	2 cut(s)	256, 347
BalI	TGGCCA	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	920
BbvI	GCAGC	2 cut(s)	399, 409
BccI	CCATC	3 cut(s)	205, 280, 949
BceAI	ACGGC	2 cut(s)	344, 375
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	971
BcoDI	GTCTC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	997
BfrI	CTTAAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	971
BisI	GCNGC	2 cut(s)	388, 398
BlsI	GCNGC	2 cut(s)	389, 399
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	2 cut(s)	256, 347
BmgT120I	GGNCC	2 cut(s)	256, 347
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	6 cut(s)	142, 239, 414, 427, 634, 914
BoxI	GACNNNNGTC	1 cut(s)	987
BpiI	GAAGAC	1 cut(s)	920
BpmI	CTGGAG	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	634
BpuEI	CTTGAG	3 cut(s)	305, 570, 710
Bsa29I	ATCGAT	1 cut(s)	678
BsaBI	GATNNNNATC	2 cut(s)	58, 959
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse118I	RCCGGY	3 cut(s)	134, 138, 845
Bse1I	ACTGG	1 cut(s)	809
Bse8I	GATNNNNATC	2 cut(s)	58, 959
BseBI	CCWGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	678
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	4 cut(s)	254, 429, 649, 957
BseJI	GATNNNNATC	2 cut(s)	58, 959
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	2 cut(s)	273, 896
BseNI	ACTGG	1 cut(s)	809
BseRI	GAGGAG	3 cut(s)	280, 477, 593
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	399, 409
Bsh1236I	CGCG	2 cut(s)	543, 545
Bsh1285I	CGRYCG	2 cut(s)	56, 139
BshFI	GGCC	4 cut(s)	101, 138, 201, 302
BshVI	ATCGAT	1 cut(s)	678
BsiEI	CGRYCG	2 cut(s)	56, 139
BsiSI	CCGG	4 cut(s)	135, 139, 378, 846
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	4 cut(s)	101, 138, 201, 302
Bso31I	GGTCTC	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	634
Bsp143I	GATC	4 cut(s)	53, 59, 679, 820
BspACI	CCGC	4 cut(s)	155, 400, 520, 627
BspANI	GGCC	4 cut(s)	101, 138, 201, 302
BspCNI	CTCAG	2 cut(s)	274, 895
BspDI	ATCGAT	1 cut(s)	678
BspFNI	CGCG	2 cut(s)	543, 545
BspHI	TCATGA	2 cut(s)	574, 925
BspT104I	TTCGAA	1 cut(s)	634
BspTI	CTTAAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	199
BsrFI	RCCGGY	3 cut(s)	134, 138, 845
BsrI	ACTGG	1 cut(s)	809
BssAI	RCCGGY	3 cut(s)	134, 138, 845
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	53, 59, 679, 820
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	4 cut(s)	169, 734, 902, 989
Bst6I	CTCTTC	3 cut(s)	585, 771, 863
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	136, 339
BstDEI	CTNAG	6 cut(s)	196, 282, 514, 600, 877, 882
BstF5I	GGATG	4 cut(s)	254, 429, 649, 957
BstFNI	CGCG	2 cut(s)	543, 545
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	4 cut(s)	56, 62, 682, 823
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	4 cut(s)	53, 59, 679, 820
BstMCI	CGRYCG	2 cut(s)	56, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	519, 1002
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	845
BstPAI	GACNNNNGTC	1 cut(s)	987
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	997
BstUI	CGCG	2 cut(s)	543, 545
BstV1I	GCAGC	2 cut(s)	399, 409
BstV2I	GAAGAC	1 cut(s)	920
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstZI	CGGCCG	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	678
BsuI	GTATCC	1 cut(s)	971
BsuRI	GGCC	4 cut(s)	101, 138, 201, 302
BsuTUI	ATCGAT	1 cut(s)	678
BtsCI	GGATG	4 cut(s)	254, 429, 649, 957
BtsIMutI	CAGTG	3 cut(s)	739, 907, 945
Cac8I	GCNNGC	2 cut(s)	136, 339
CciI	TCATGA	2 cut(s)	574, 925
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	3 cut(s)	134, 138, 845
Cfr13I	GGNCC	2 cut(s)	256, 347
ClaI	ATCGAT	1 cut(s)	678
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	4 cut(s)	624, 832, 849, 886
CviAII	CATG	4 cut(s)	575, 842, 926, 948
CviQI	GTAC	4 cut(s)	624, 832, 849, 886
DdeI	CTNAG	6 cut(s)	196, 282, 514, 600, 877, 882
DpnI	GATC	4 cut(s)	55, 61, 681, 822
DpnII	GATC	4 cut(s)	53, 59, 679, 820
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
EaeI	YGGCCR	2 cut(s)	136, 300
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	585, 771, 863
EarI	CTCTTC	3 cut(s)	585, 771, 863
EclXI	CGGCCG	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	256, 347
Eco52I	CGGCCG	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	604, 795
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	4 cut(s)	578, 845, 929, 951
FalI	AAGNNNNNCTT	6 cut(s)	179, 211, 314, 346, 602, 634
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	4 cut(s)	574, 841, 925, 947
Fnu4HI	GCNGC	2 cut(s)	388, 398
FokI	GGATG	4 cut(s)	261, 436, 656, 964
Fsp4HI	GCNGC	2 cut(s)	388, 398
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	2 cut(s)	388, 398
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	4 cut(s)	101, 138, 201, 302
HapII	CCGG	4 cut(s)	135, 139, 378, 846
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	545
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	578, 845, 929, 951
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HinfI	GANTC	3 cut(s)	307, 493, 562
HpaI	GTTAAC	1 cut(s)	898
HpaII	CCGG	4 cut(s)	135, 139, 378, 846
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188I	TCNGA	3 cut(s)	46, 492, 825
Hpy8I	GTNNAC	1 cut(s)	898
HpyAV	CCTTC	3 cut(s)	96, 112, 563
HpyCH4III	ACNGT	4 cut(s)	169, 734, 902, 989
HpyCH4IV	ACGT	5 cut(s)	35, 129, 475, 718, 894
HpyCH4V	TGCA	3 cut(s)	252, 397, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	519, 1002
HpyF3I	CTNAG	6 cut(s)	196, 282, 514, 600, 877, 882
HpySE526I	ACGT	5 cut(s)	35, 129, 475, 718, 894
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	578, 845, 929, 951
HspAI	GCGC	1 cut(s)	543
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	898
Kzo9I	GATC	4 cut(s)	53, 59, 679, 820
Lsp1109I	GCAGC	2 cut(s)	399, 409
LweI	GCATC	6 cut(s)	142, 239, 414, 427, 634, 914
MaeII	ACGT	5 cut(s)	35, 129, 475, 718, 894
MalI	GATC	4 cut(s)	55, 61, 681, 822
MboI	GATC	4 cut(s)	53, 59, 679, 820
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	3 cut(s)	637, 650, 699
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	316, 502
MmeI	TCCRAC	1 cut(s)	470
Mox20I	TGGCCA	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	2 cut(s)	186, 897
MslI	CAYNNNNRTG	1 cut(s)	930
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	400
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	4 cut(s)	135, 139, 378, 846
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	543, 545
MwoI	GCNNNNNNNGC	2 cut(s)	519, 1002
NaeI	GCCGGC	1 cut(s)	136
NdeII	GATC	4 cut(s)	53, 59, 679, 820
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	4 cut(s)	578, 845, 929, 951
NspI	RCATGY	1 cut(s)	845
NspV	TTCGAA	1 cut(s)	634
PagI	TCATGA	2 cut(s)	574, 925
PcsI	WCGNNNNNNNCGW	5 cut(s)	23, 26, 29, 32, 35
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	562
PflFI	GACNNNGTC	2 cut(s)	34, 1019
PkrI	GCNGC	2 cut(s)	389, 399
Ple19I	CGATCG	1 cut(s)	56
PleI	GAGTC	2 cut(s)	315, 501
PpsI	GAGTC	2 cut(s)	315, 501
PpuMI	RGGWCCY	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	987
Psp1406I	AACGTT	1 cut(s)	894
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	256, 347
PspPPI	RGGWCCY	1 cut(s)	256
PsyI	GACNNNGTC	2 cut(s)	34, 1019
PvuI	CGATCG	1 cut(s)	56
RsaI	GTAC	4 cut(s)	625, 833, 850, 887
RsaNI	GTAC	4 cut(s)	624, 832, 849, 886
RseI	CAYNNNNRTG	1 cut(s)	930
SaqAI	TTAA	2 cut(s)	186, 897
SatI	GCNGC	2 cut(s)	388, 398
Sau3AI	GATC	4 cut(s)	53, 59, 679, 820
Sau96I	GGNCC	2 cut(s)	256, 347
SchI	GAGTC	2 cut(s)	316, 502
ScrFI	CCNGG	1 cut(s)	260
SfaNI	GCATC	6 cut(s)	142, 239, 414, 427, 634, 914
SfcI	CTRYAG	1 cut(s)	997
SfuI	TTCGAA	1 cut(s)	634
SinI	GGWCC	2 cut(s)	256, 347
SmiMI	CAYNNNNRTG	1 cut(s)	930
SmlI	CTYRAG	4 cut(s)	185, 320, 585, 689
SmoI	CTYRAG	4 cut(s)	185, 320, 585, 689
Sse9I	AATT	3 cut(s)	637, 650, 699
SsiI	CCGC	4 cut(s)	155, 400, 520, 627
SspI	AATATT	1 cut(s)	526
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	4 cut(s)	169, 734, 902, 989
TaiI	ACGT	5 cut(s)	38, 132, 478, 721, 897
TaqI	TCGA	7 cut(s)	38, 56, 62, 634, 678, 838, 869
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	637, 650, 699
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	2 cut(s)	186, 897
Tru9I	TTAA	2 cut(s)	186, 897
TscAI	CASTG	3 cut(s)	739, 907, 945
TseI	GCWGC	2 cut(s)	387, 397
TspDTI	ATGAA	5 cut(s)	767, 810, 850, 936, 1017
TspRI	CASTG	3 cut(s)	739, 907, 945
Tth111I	GACNNNGTC	2 cut(s)	34, 1019
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	256, 347
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	1 cut(s)	845
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.