Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Forward (+)

40318249 .. 40322173

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G483700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAAGGCTTACCCACAACGACGAAATCAGAGAGGCGATGGAGATCGAAGCCTCTTCAGACGTCCAAGCCATCTATCCTAATGGCCTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCCGGTTGTGGCAAGACGCAGAGAACAGAACAGTACTCACTAATATTCTTAAGAAGAACTTAGGCCAGAGACCAAAGGTTCTTTCAGTTGAAGACAAGTTAGCGGTCCTTGGATGCAAAGACCTGGAGAGGAGGATTGTGGAAGCTGAGATGGACCTGACGTTGGCCAAGAGTCAAGGATACCTCAAGAATCACTTGCAACAAAAGGTGTCTTCTTCTGGTCAATTGCTCGCTGTTATTGGAGTTTATACTGGATTTGGTAGTCATTTGAACCGAAATATGTTTAGAGGGTCTTGGATGCCTAAAGGTGATGCTTTGAGAAAACTAGAAGAAAGAGGAGTAGTCATACGCTTTGTAATTGGTCGGAGTCCCAATCAGGGTGATAGCTTAGATCGCAATATTGATAAGGAAAGTCGGTCGACAAAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAGTTGACCAAAAAAGTAAAGTTCTTCTTCAGTACTGCAGTTCAAAATTGGGATGCTGAGTTTTATGTCAAAGTCGATGACAATATCAATCTTGATCTTGAGGGGCTAATTGGACTTCTTGAACATCGTCGTGCTCAAGATGGTGCTTATATCGGTTGCATGAAGTCAGGAGATGTGATTTCTGAAGAGGGAAAGGCTTGGTATGAGCCTGACTGGTGGAAATTTGGGGATCAGAAATCGTATTTCCGTCATGCAGGTAGTTCACTCATAATACTATCCAAGAACTTAGCTCAGTATATAAACATAAACAGTGCATCTTTGAAGACTTATGCTCATGATGATGTATCAGTGGGTTCATGGATGATGGGTATCCAAGCCACATATATAGATGACAACCGCCTTTGTTGTGGTAGCATTAGACAAGACAAGGTGTGTTCTTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

344

Amino Acids

38.9

Weight (kDa)

8.59

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	830
AccI	GTMKAC	1 cut(s)	539
AciI	CCGC	2 cut(s)	224, 982
AclWI	GGATC	1 cut(s)	822
AcoI	YGGCCR	2 cut(s)	121, 285
AcsI	RAATTY	1 cut(s)	806
AcuI	CTGAAG	3 cut(s)	41, 598, 789
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	156, 619
AfiI	CCNNNNNNNGG	2 cut(s)	283, 497
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	212, 391, 563, 629, 707, 907
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	3 cut(s)	266, 507, 875
AluI	AGCT	3 cut(s)	266, 507, 875
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	822
AoxI	GGCC	4 cut(s)	84, 121, 184, 285
ApoI	RAATTY	1 cut(s)	806
AspS9I	GGNCC	2 cut(s)	226, 274
AsuHPI	GGTGA	2 cut(s)	440, 512
AvaII	GGWCC	2 cut(s)	226, 274
BalI	TGGCCA	1 cut(s)	287
BbsI	GAAGAC	3 cut(s)	219, 324, 914
Bbv12I	GWGCWC	1 cut(s)	721
BccI	CCATC	5 cut(s)	33, 79, 265, 719, 943
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	2 cut(s)	293, 965
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	830
BfuI	GTATCC	2 cut(s)	293, 965
BmcAI	AGTACT	2 cut(s)	156, 619
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	226, 274
BmgT120I	GGNCC	2 cut(s)	226, 274
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	5 cut(s)	224, 408, 421, 628, 908
BpiI	GAAGAC	3 cut(s)	219, 324, 914
BpmI	CTGGAG	1 cut(s)	266
BpuEI	CTTGAG	4 cut(s)	290, 564, 704, 705
BsaBI	GATNNNNATC	2 cut(s)	43, 953
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 497
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	376, 803
Bse8I	GATNNNNATC	2 cut(s)	43, 953
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	4 cut(s)	239, 423, 643, 951
BseJI	GATNNNNATC	2 cut(s)	43, 953
BseLI	CCNNNNNNNGG	2 cut(s)	283, 497
BseMII	CTCAG	3 cut(s)	258, 633, 890
BseNI	ACTGG	2 cut(s)	376, 803
BseRI	GAGGAG	3 cut(s)	265, 471, 587
Bsh1285I	CGRYCG	1 cut(s)	539
BshFI	GGCC	4 cut(s)	86, 123, 186, 287
BsiEI	CGRYCG	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	283, 497
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	4 cut(s)	86, 123, 186, 287
Bso31I	GGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	4 cut(s)	44, 511, 679, 814
BspACI	CCGC	2 cut(s)	224, 982
BspANI	GGCC	4 cut(s)	86, 123, 186, 287
BspCNI	CTCAG	3 cut(s)	259, 634, 889
BspHI	TCATGA	2 cut(s)	568, 919
BspMAI	CTGCAG	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	830
BspPI	GGATC	1 cut(s)	822
BspTI	CTTAAG	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	376, 803
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	4 cut(s)	44, 511, 679, 814
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	154, 896
Bst6I	CTCTTC	3 cut(s)	60, 579, 765
BstACI	GRCGYC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	121, 351
BstDEI	CTNAG	6 cut(s)	181, 267, 508, 642, 871, 876
BstF5I	GGATG	4 cut(s)	239, 423, 643, 951
BstKTI	GATC	4 cut(s)	47, 514, 682, 817
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	4 cut(s)	44, 511, 679, 814
BstMCI	CGRYCG	1 cut(s)	539
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	621
BstV2I	GAAGAC	3 cut(s)	219, 324, 914
BsuI	GTATCC	2 cut(s)	293, 965
BsuRI	GGCC	4 cut(s)	86, 123, 186, 287
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	4 cut(s)	239, 423, 643, 951
BtsIMutI	CAGTG	2 cut(s)	901, 939
BveI	ACCTGC	1 cut(s)	830
Cac8I	GCNNGC	2 cut(s)	121, 351
CciI	TCATGA	2 cut(s)	568, 919
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	226, 274
CseI	GACGC	2 cut(s)	88, 146
Csp6I	GTAC	2 cut(s)	155, 618
CviAII	CATG	5 cut(s)	569, 745, 836, 920, 942
CviQI	GTAC	2 cut(s)	155, 618
DdeI	CTNAG	6 cut(s)	181, 267, 508, 642, 871, 876
DpnI	GATC	4 cut(s)	46, 513, 681, 816
DpnII	GATC	4 cut(s)	44, 511, 679, 814
EaeI	YGGCCR	2 cut(s)	121, 285
Eam1104I	CTCTTC	3 cut(s)	60, 579, 765
EarI	CTCTTC	3 cut(s)	60, 579, 765
Eco130I	CCWWGG	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	226, 274
Eco57I	CTGAAG	3 cut(s)	41, 598, 789
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	5 cut(s)	572, 748, 839, 923, 945
FalI	AAGNNNNNCTT	8 cut(s)	164, 196, 299, 331, 536, 568, 596, 628
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	5 cut(s)	568, 744, 835, 919, 941
FblI	GTMKAC	1 cut(s)	539
FokI	GGATG	4 cut(s)	246, 430, 650, 958
FspBI	CTAG	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	4 cut(s)	86, 123, 186, 287
HapII	CCGG	1 cut(s)	124
HgaI	GACGC	2 cut(s)	88, 146
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	5 cut(s)	572, 748, 839, 923, 945
HincII	GTYRAC	2 cut(s)	540, 591
HindII	GTYRAC	2 cut(s)	540, 591
HinfI	GANTC	4 cut(s)	292, 310, 487, 556
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	440, 512
Hpy166II	GTNNAC	3 cut(s)	540, 591, 848
Hpy188I	TCNGA	5 cut(s)	31, 60, 486, 769, 819
Hpy8I	GTNNAC	3 cut(s)	540, 591, 848
Hpy99I	CGWCG	4 cut(s)	25, 104, 119, 717
HpyAV	CCTTC	2 cut(s)	97, 557
HpyCH4III	ACNGT	2 cut(s)	154, 896
HpyCH4IV	ACGT	3 cut(s)	62, 114, 281
HpyCH4V	TGCA	6 cut(s)	237, 319, 623, 744, 839, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	6 cut(s)	181, 267, 508, 642, 871, 876
HpySE526I	ACGT	3 cut(s)	62, 114, 281
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	572, 748, 839, 923, 945
Kzo9I	GATC	4 cut(s)	44, 511, 679, 814
LweI	GCATC	5 cut(s)	224, 408, 421, 628, 908
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	3 cut(s)	62, 114, 281
MalI	GATC	4 cut(s)	46, 513, 681, 816
MboI	GATC	4 cut(s)	44, 511, 679, 814
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	721
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	5 cut(s)	344, 477, 631, 693, 806
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	301, 496
MmeI	TCCRAC	1 cut(s)	464
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	2 cut(s)	714, 924
Msp20I	TGGCCA	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	513
NdeII	GATC	4 cut(s)	44, 511, 679, 814
NlaIII	CATG	5 cut(s)	572, 748, 839, 923, 945
PagI	TCATGA	2 cut(s)	568, 919
PfeI	GAWTC	2 cut(s)	310, 556
PleI	GAGTC	2 cut(s)	300, 495
PpsI	GAGTC	2 cut(s)	300, 495
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	226, 274
PstI	CTGCAG	1 cut(s)	625
RsaI	GTAC	2 cut(s)	156, 619
RsaNI	GTAC	2 cut(s)	155, 618
RseI	CAYNNNNRTG	2 cut(s)	714, 924
SalI	GTCGAC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	44, 511, 679, 814
Sau96I	GGNCC	2 cut(s)	226, 274
ScaI	AGTACT	2 cut(s)	156, 619
SchI	GAGTC	2 cut(s)	301, 496
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	5 cut(s)	224, 408, 421, 628, 908
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	2 cut(s)	226, 274
SmiMI	CAYNNNNRTG	2 cut(s)	714, 924
SmlI	CTYRAG	5 cut(s)	170, 305, 579, 683, 720
SmoI	CTYRAG	5 cut(s)	170, 305, 579, 683, 720
Sse9I	AATT	5 cut(s)	344, 477, 631, 693, 806
SsiI	CCGC	2 cut(s)	224, 982
SspI	AATATT	2 cut(s)	166, 520
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	154, 896
TaiI	ACGT	3 cut(s)	65, 117, 284
TaqI	TCGA	3 cut(s)	47, 539, 660
TaqII	GACCGA	1 cut(s)	525
TasI	AATT	5 cut(s)	344, 477, 631, 693, 806
TatI	WGTACW	2 cut(s)	154, 617
TfiI	GAWTC	2 cut(s)	310, 556
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	901, 939
TspDTI	ATGAA	2 cut(s)	761, 930
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	2 cut(s)	901, 939
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	226, 274
XapI	RAATTY	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	1 cut(s)	446
ZraI	GACGTC	1 cut(s)	63
ZrmI	AGTACT	2 cut(s)	156, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.