Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Forward (+)

17505893 .. 17507817

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1157300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAAGGCTTGCCGACGATGATGAAATCAGAGCGGCGATGGCGATCGAAGCCGCTTCAGACCTCCAAGCCCTCCATTCTCATGGCCTTCTCCTGCGTCGCTTGGCTCTACGTCGCCGGCCGGTTGTGGCAGGATGCGGAGAACAGAACAGTGCTTTCTAATCTTCTAAACAAGAACTTGGGCCAGAGACCAAAGGTTCTCTCGGTAGAGGACAAGTTAGCAGTGCTTGGATGCAAAGACCTGGAGAGGAGGATTGTGAAAGCTGAGATGGACTTGACGCTGGCCAAGAGTCAAGGGTACCTCAAGAACCACTTGCAACCAAAGGTGTCTTCTTCTGGCCGATTGCTCGCTGTTATTGGAGTTTATACTGGATTTGGTAGTCATTTGAACCGAAATATGTTTAGAGGGTCTTGGATGCCTAAAGGTCAGTTGGAATTTCTGATGGCAATTTATACAGATTTACCACGTGTTCTCTCTCTGACTAAACTTACGGTGGCATCGCTTGAATTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

172

Amino Acids

19.38

Weight (kDa)

10.15

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	25 - 98	5e-06	Domain of unknown function (DUF4094)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	3 cut(s)	34, 53, 137
AcoI	YGGCCR	3 cut(s)	118, 282, 337
AcsI	RAATTY	2 cut(s)	434, 506
AcuI	CTGAAG	1 cut(s)	41
AcvI	CACGTG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	2 cut(s)	388, 506
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	181
AoxI	GGCC	5 cut(s)	84, 118, 181, 282, 337
ApoI	RAATTY	2 cut(s)	434, 506
Asp718I	GGTACC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	297
BbrPI	CACGTG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	321
BccI	CCATC	3 cut(s)	33, 262, 436
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	181
BisI	GCNGC	2 cut(s)	35, 53
BlsI	GCNGC	2 cut(s)	36, 54
Bme1390I	CCNGG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	4 cut(s)	124, 221, 405, 506
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	181
Bse118I	RCCGGY	2 cut(s)	116, 120
Bse1I	ACTGG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	242
BseGI	GGATG	3 cut(s)	139, 236, 420
BseJI	GATNNNNATC	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	262
BseX3I	CGGCCG	1 cut(s)	118
Bsh1285I	CGRYCG	2 cut(s)	47, 121
BshFI	GGCC	5 cut(s)	86, 120, 183, 284, 339
BshNI	GGYRCC	1 cut(s)	297
BsiEI	CGRYCG	2 cut(s)	47, 121
BsiSI	CCGG	2 cut(s)	117, 121
BsmAI	GTCTC	1 cut(s)	181
BsnI	GGCC	5 cut(s)	86, 120, 183, 284, 339
Bso31I	GGTCTC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	3 cut(s)	34, 53, 137
BspANI	GGCC	5 cut(s)	86, 120, 183, 284, 339
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	181
BsrBI	CCGCTC	1 cut(s)	34
BsrFI	RCCGGY	2 cut(s)	116, 120
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	2 cut(s)	116, 120
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	151, 493
BstBAI	YACGTR	1 cut(s)	467
BstC8I	GCNNGC	4 cut(s)	11, 118, 282, 348
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	139, 236, 420
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	44
BstMCI	CGRYCG	2 cut(s)	47, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 49
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	5 cut(s)	86, 120, 183, 284, 339
BtgZI	GCGATG	2 cut(s)	52, 483
BtsCI	GGATG	3 cut(s)	139, 236, 420
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	156, 228
Cac8I	GCNNGC	4 cut(s)	11, 118, 282, 348
Cfr10I	RCCGGY	2 cut(s)	116, 120
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	2 cut(s)	85, 286
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	82
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EaeI	YGGCCR	3 cut(s)	118, 282, 337
EagI	CGGCCG	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	181
Eco52I	CGGCCG	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	467
EcoRI	GAATTC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	85
FaiI	YATR	4 cut(s)	83, 366, 398, 453
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	35, 53
FokI	GGATG	3 cut(s)	146, 243, 427
Fsp4HI	GCNGC	2 cut(s)	35, 53
GluI	GCNGC	2 cut(s)	35, 53
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	5 cut(s)	86, 120, 183, 284, 339
HapII	CCGG	2 cut(s)	117, 121
HgaI	GACGC	2 cut(s)	85, 286
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	117, 121
Hpy188I	TCNGA	5 cut(s)	31, 60, 441, 480, 512
Hpy188III	TCNNGA	1 cut(s)	304
Hpy99I	CGWCG	3 cut(s)	19, 101, 116
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	151, 493
HpyCH4IV	ACGT	2 cut(s)	111, 466
HpyCH4V	TGCA	2 cut(s)	234, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 49
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	2 cut(s)	111, 466
Hsp92II	CATG	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	301
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	44
LweI	GCATC	4 cut(s)	124, 221, 405, 506
MaeII	ACGT	2 cut(s)	111, 466
MalI	GATC	1 cut(s)	46
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	1 cut(s)	44
MboII	GAAGA	3 cut(s)	155, 321, 324
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	3 cut(s)	434, 447, 506
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	7 cut(s)	73, 82, 202, 240, 243, 311, 398
Mox20I	TGGCCA	1 cut(s)	284
MroNI	GCCGGC	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	284
MspI	CCGG	2 cut(s)	117, 121
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	40, 49
NaeI	GCCGGC	1 cut(s)	118
NdeII	GATC	1 cut(s)	44
NgoMIV	GCCGGC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	36, 54
Ple19I	CGATCG	1 cut(s)	47
PleI	GAGTC	1 cut(s)	297
PmaCI	CACGTG	1 cut(s)	467
PmlI	CACGTG	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	297
Ppu21I	YACGTR	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	240
PspCI	CACGTG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	80
SatI	GCNGC	2 cut(s)	35, 53
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	9 cut(s)	65, 114, 198, 243, 265, 303, 327, 427, 469
SfaNI	GCATC	4 cut(s)	124, 221, 405, 506
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	434, 447, 506
SsiI	CCGC	3 cut(s)	34, 53, 137
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	151, 493
TaiI	ACGT	2 cut(s)	114, 469
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	434, 447, 506
TauI	GCSGC	2 cut(s)	37, 55
TscAI	CASTG	2 cut(s)	156, 228
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	156, 228
XapI	RAATTY	2 cut(s)	434, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.