Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007164

Physical Location & Seq

Genomic Coordinates Reverse (-)

22462255 .. 22464964

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAAAGCTTACCGACGACGACGTTGAAATCCGATAGACGATCGAGATCGAAGCCTACTCAAACTTCCAAGCCCTCCATCTTCCTCGCCTTCTTCTCCTGCGTCGCTTGGCTCTACGTCGCCGGCCGGTTGTGGCAAGATGCGGAGAACAGAACAGTCCTAGCTAATCTTCTCAACAAGAACTTAGCCCAGAGACCTATGGTGCTTTCAGTTGAAGATAAGCTAGCAGTCCTTGGATGCAAAGATTTGGAGAGGAGGATTGTTGAAGCTGAGATGGACTTGACGTTGGCCAAGAGTCAAGGCTACCTCAAGAACAATTTGCAGCAAAAGGTGTCTTCTTCTGGTCCATTTCTTGCTGTTATTGGAGTTTATACTGGATTTGGTAGCCGATTGAAGCGAAATGGGTTTAGAGGGTCTTGGATGCCTAAAGTTGATGCTTTGAGAAAACTTGAGGAAAGAGGAGTAGTCATACGTTTTGTGATTGGTCGGAGCCCCAATAAAGGCGATAGCTTAGACCGCAATATTGATCAGGAAAGTCAAGCGACACAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAGATGCCTAAAAAAGCAAAGTTCTTCTTCAGTACTGCAGTTCGAAATTGGGATGCTGAATTTTATGTAAAAGTTGATGACAATATTGATCTTGACCTTGAGGGGCTAATTGGACTTCTTGAAAAACGTCGTGGTCAAGCCAGTGCTTATATTGGTTGTATGAAGTCAGGAGATGTCATTGCTGAAGAGGGAAAGCCTTGGTATGAACCTGACTGGTGGAAATTTGGGGATCAGAAATCGTACTTCCGACATGCTGGTACTTCACTCTTCATACTATCCAAGAACTTGGCTCAGTACATAAACGTAAACAGGTGTGTTCTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0070085 GO:0071554 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

305

Amino Acids

34.51

Weight (kDa)

9.02

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	23 - 100	1.1e-06	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	132 - 297	5.3e-24	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25300 AT2G25300 AT4G32120
fragaria_vesca	FvH4_2g28760
malus_domestica	MD08G1157300.v1.1 MD08G1157500.v1.1 MD15G1128400.v1.1
prunus_persica	Prupe.1G483700_v2.0.a1 Prupe.1G483700_v2.0.a1
pyrus_communis	pycom08g12950
rosa_chinensis	RchiOBHm_Chr6g0297521
rosa_laevigata	RLG00000011587
rosa_multiflora	Rmu_sc0003740.1_g000002 Rmu_sc0008467.1_g000001 Rmu_sc0042947.1_g000001 Rmu_ssc0000319.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170400
rosa_rugosa	Rorug06G0273100 Rorug06G0273100 Rorug06G0273200
rosa_samantha	Rh6AG384200 Rh6BG392300 Rh6CG398200 Rh6DG384700
rosa_wichuraiana	Rw6G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	143, 517
AclWI	GGATC	1 cut(s)	825
AcoI	YGGCCR	2 cut(s)	124, 288
AcsI	RAATTY	2 cut(s)	647, 809
AcuI	CTGAAG	2 cut(s)	601, 792
AfaI	GTAC	4 cut(s)	622, 830, 847, 884
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	6 cut(s)	28, 215, 266, 394, 566, 710
AluBI	AGCT	6 cut(s)	9, 164, 223, 269, 510, 912
AluI	AGCT	6 cut(s)	9, 164, 223, 269, 510, 912
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	825
AoxI	GGCC	2 cut(s)	124, 288
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	2 cut(s)	647, 809
AspS9I	GGNCC	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	631
AsuNHI	GCTAGC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	86, 268
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	3 cut(s)	161, 224, 913
BfmI	CTRYAG	1 cut(s)	624
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
BmcAI	AGTACT	1 cut(s)	622
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	491
BmsI	GCATC	6 cut(s)	130, 227, 411, 424, 582, 631
BmtI	GCTAGC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	631
BpuEI	CTTGAG	4 cut(s)	293, 470, 567, 707
BsaBI	GATNNNNATC	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	232, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse118I	RCCGGY	2 cut(s)	122, 126
Bse1I	ACTGG	3 cut(s)	379, 729, 806
Bse3DI	GCAATG	1 cut(s)	765
Bse8I	GATNNNNATC	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	232, 785
BseGI	GGATG	3 cut(s)	242, 426, 646
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	261, 893
BseNI	ACTGG	3 cut(s)	379, 729, 806
BseRI	GAGGAG	3 cut(s)	268, 474, 590
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	334
Bsh1285I	CGRYCG	2 cut(s)	44, 127
BshFI	GGCC	2 cut(s)	126, 290
BsiEI	CGRYCG	2 cut(s)	44, 127
BsiSI	CCGG	2 cut(s)	123, 127
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	126, 290
Bso31I	GGTCTC	1 cut(s)	187
Bsp119I	TTCGAA	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	5 cut(s)	41, 47, 526, 676, 817
BspACI	CCGC	2 cut(s)	143, 517
BspANI	GGCC	2 cut(s)	126, 290
BspCNI	CTCAG	2 cut(s)	262, 892
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	1 cut(s)	491
BspMAI	CTGCAG	1 cut(s)	628
BspOI	GCTAGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	825
BspT104I	TTCGAA	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	765
BsrFI	RCCGGY	2 cut(s)	122, 126
BsrI	ACTGG	3 cut(s)	379, 729, 806
BssAI	RCCGGY	2 cut(s)	122, 126
BssECI	CCNNGG	2 cut(s)	232, 785
BssMI	GATC	5 cut(s)	41, 47, 526, 676, 817
BssT1I	CCWWGG	2 cut(s)	232, 785
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	3 cut(s)	582, 768, 860
BstBI	TTCGAA	1 cut(s)	631
BstC8I	GCNNGC	2 cut(s)	124, 225
BstDEI	CTNAG	5 cut(s)	184, 270, 511, 879, 908
BstF5I	GGATG	3 cut(s)	242, 426, 646
BstKTI	GATC	5 cut(s)	44, 50, 529, 679, 820
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	5 cut(s)	41, 47, 526, 676, 817
BstMCI	CGRYCG	2 cut(s)	44, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	842
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	874
BstZI	CGGCCG	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	126, 290
BtsCI	GGATG	3 cut(s)	242, 426, 646
BtsIMutI	CAGTG	1 cut(s)	736
Cac8I	GCNNGC	2 cut(s)	124, 225
CciI	TCATGA	1 cut(s)	571
Cfr10I	RCCGGY	2 cut(s)	122, 126
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	4 cut(s)	621, 829, 846, 883
CviAII	CATG	2 cut(s)	572, 839
CviQI	GTAC	4 cut(s)	621, 829, 846, 883
DdeI	CTNAG	5 cut(s)	184, 270, 511, 879, 908
DpnI	GATC	5 cut(s)	43, 49, 528, 678, 819
DpnII	GATC	5 cut(s)	41, 47, 526, 676, 817
EaeI	YGGCCR	2 cut(s)	124, 288
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	3 cut(s)	582, 768, 860
EarI	CTCTTC	3 cut(s)	582, 768, 860
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	232, 785
Eco24I	GRGCYC	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	344
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	601, 792
EcoT14I	CCWWGG	2 cut(s)	232, 785
EcoT38I	GRGCYC	1 cut(s)	494
ErhI	CCWWGG	2 cut(s)	232, 785
FaeI	CATG	2 cut(s)	575, 842
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FatI	CATG	2 cut(s)	571, 838
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	3 cut(s)	249, 433, 653
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	3 cut(s)	161, 224, 913
GluI	GCNGC	1 cut(s)	323
HaeIII	GGCC	2 cut(s)	126, 290
HapII	CCGG	2 cut(s)	123, 127
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	575, 842
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	2 cut(s)	295, 559
HpaII	CCGG	2 cut(s)	123, 127
Hpy166II	GTNNAC	1 cut(s)	895
Hpy188I	TCNGA	4 cut(s)	34, 489, 822, 836
Hpy8I	GTNNAC	1 cut(s)	895
Hpy99I	CGWCG	6 cut(s)	19, 22, 25, 107, 122, 720
HpyAV	CCTTC	2 cut(s)	100, 560
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	6 cut(s)	23, 117, 284, 472, 715, 891
HpyCH4V	TGCA	3 cut(s)	240, 322, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	516
HpyF3I	CTNAG	5 cut(s)	184, 270, 511, 879, 908
HpySE526I	ACGT	6 cut(s)	23, 117, 284, 472, 715, 891
Hsp92II	CATG	2 cut(s)	575, 842
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	5 cut(s)	41, 47, 526, 676, 817
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	6 cut(s)	130, 227, 411, 424, 582, 631
MaeI	CTAG	3 cut(s)	161, 224, 913
MaeII	ACGT	6 cut(s)	23, 117, 284, 472, 715, 891
MalI	GATC	5 cut(s)	43, 49, 528, 678, 819
MboI	GATC	5 cut(s)	41, 47, 526, 676, 817
MhlI	GDGCHC	1 cut(s)	494
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	5 cut(s)	316, 634, 647, 696, 809
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	2 cut(s)	467, 859
Mox20I	TGGCCA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	2 cut(s)	123, 127
MwoI	GCNNNNNNNGC	1 cut(s)	516
NaeI	GCCGGC	1 cut(s)	124
NdeII	GATC	5 cut(s)	41, 47, 526, 676, 817
NgoMIV	GCCGGC	1 cut(s)	122
NheI	GCTAGC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	575, 842
NlaIV	GGNNCC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	842
NspV	TTCGAA	1 cut(s)	631
PagI	TCATGA	1 cut(s)	571
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	324
Ple19I	CGATCG	1 cut(s)	44
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	628
PvuI	CGATCG	1 cut(s)	44
RsaI	GTAC	4 cut(s)	622, 830, 847, 884
RsaNI	GTAC	4 cut(s)	621, 829, 846, 883
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	5 cut(s)	41, 47, 526, 676, 817
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	6 cut(s)	130, 227, 411, 424, 582, 631
SfcI	CTRYAG	1 cut(s)	624
SfuI	TTCGAA	1 cut(s)	631
SinI	GGWCC	1 cut(s)	344
SmlI	CTYRAG	4 cut(s)	308, 449, 582, 686
SmoI	CTYRAG	4 cut(s)	308, 449, 582, 686
Sse9I	AATT	5 cut(s)	316, 634, 647, 696, 809
SsiI	CCGC	2 cut(s)	143, 517
SspI	AATATT	2 cut(s)	523, 673
SspMI	CTAG	3 cut(s)	161, 224, 913
StyI	CCWWGG	2 cut(s)	232, 785
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	6 cut(s)	26, 120, 287, 475, 718, 894
TaqI	TCGA	3 cut(s)	44, 50, 631
TasI	AATT	5 cut(s)	316, 634, 647, 696, 809
TatI	WGTACW	2 cut(s)	620, 882
TfiI	GAWTC	1 cut(s)	559
TscAI	CASTG	1 cut(s)	736
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	764, 807, 847
TspRI	CASTG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	2 cut(s)	647, 809
XceI	RCATGY	1 cut(s)	842
XspI	CTAG	3 cut(s)	161, 224, 913
ZrmI	AGTACT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.