AT2G26500

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005452
Physical Location & Seq
Forward (+)
11270082 .. 11271074
993 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26500.3

Sequence Viewer

Length: 378 bp
ATGGCGACAGCAGCAGCACCAGCAGTGATTTCATGGACAAGATCAGGCATTGTGTCCAAATCCGGACAAACCCAGAAGAAATCTGAGATGAAAGTTTCTTACATAACTGGACTTAACTCATATGGTGGTCTCAAGGCACAGAACAACAAGGTTGTCTCAATGGGATCACCACTCTGCACAGAACAGTGTTTTGCTAACGTTGTGATGTCTCTCAAAGGAAGAAGAGGTAATGGAGGAGCCTTATCCACCACGTGTAACGCTGTCGGAGAGATTTTCAAGATTGCAGCAATCATGAACGCTCTTACTCTTGTTGGTGTTGCAGTTGGATTCGTTCTTCTTCGAATCGAAACTTCTGTTGAAGAAGCTGAAGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

125

Amino Acids

12.99

Weight (kDa)

9.15

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 62
AclI AACGTT 1 cut(s) 198
AclWI GGATC 1 cut(s) 172
AcvI CACGTG 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 252
AflIII ACRYGT 1 cut(s) 251
AgsI TTSAA 2 cut(s) 277, 359
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
Alw26I GTCTC 3 cut(s) 134, 160, 213
AlwI GGATC 1 cut(s) 172
Aor13HI TCCGGA 1 cut(s) 62
ApeKI GCWGC 3 cut(s) 11, 14, 284
AsuHPI GGTGA 1 cut(s) 159
AsuII TTCGAA 1 cut(s) 340
BbrPI CACGTG 1 cut(s) 252
BbvI GCAGC 3 cut(s) 23, 26, 296
BcoDI GTCTC 3 cut(s) 134, 160, 213
BisI GCNGC 3 cut(s) 12, 15, 285
BlsI GCNGC 3 cut(s) 13, 16, 286
BmiI GGNNCC 1 cut(s) 238
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 62
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 3 cut(s) 23, 26, 296
BsgI GTGCAG 1 cut(s) 160
BsiSI CCGG 1 cut(s) 63
BsmAI GTCTC 3 cut(s) 134, 160, 213
Bso31I GGTCTC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 2 cut(s) 41, 164
BspCNI CTCAG 1 cut(s) 76
BspEI TCCGGA 1 cut(s) 62
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 112
BssMI GATC 2 cut(s) 41, 164
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 84
BstKTI GATC 2 cut(s) 44, 167
BstMAI GTCTC 3 cut(s) 134, 160, 213
BstMBI GATC 2 cut(s) 41, 164
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstV1I GCAGC 3 cut(s) 23, 26, 296
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 191
CciI TCATGA 1 cut(s) 291
CviAII CATG 2 cut(s) 33, 292
CviJI RGCY 2 cut(s) 239, 365
CviKI_1 RGCY 2 cut(s) 239, 365
DdeI CTNAG 1 cut(s) 84
DpnI GATC 2 cut(s) 43, 166
DpnII GATC 2 cut(s) 41, 164
DraIII CACNNNGTG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 134
Eco72I CACGTG 1 cut(s) 252
FaeI CATG 2 cut(s) 36, 295
FaiI YATR 5 cut(s) 34, 104, 121, 123, 293
FatI CATG 2 cut(s) 32, 291
FauNDI CATATG 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 12, 15, 285
Fsp4HI GCNGC 3 cut(s) 12, 15, 285
GluI GCNGC 3 cut(s) 12, 15, 285
HapII CCGG 1 cut(s) 63
Hin1II CATG 2 cut(s) 36, 295
HinfI GANTC 2 cut(s) 327, 342
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 85, 266
Hpy188III TCNNGA 3 cut(s) 63, 277, 292
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 2 cut(s) 198, 251
HpyCH4V TGCA 3 cut(s) 177, 284, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 198, 251
Hsp92II CATG 2 cut(s) 36, 295
Kpn2I TCCGGA 1 cut(s) 62
Kzo9I GATC 2 cut(s) 41, 164
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 30, 33, 76, 86, 93
Lsp1109I GCAGC 3 cut(s) 23, 26, 296
MaeII ACGT 2 cut(s) 198, 251
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 43, 166
MboI GATC 2 cut(s) 41, 164
MboII GAAGA 6 cut(s) 88, 231, 234, 326, 329, 371
MmeI TCCRAC 2 cut(s) 244, 304
MnlI CCTC 2 cut(s) 218, 227
MroI TCCGGA 1 cut(s) 62
MseI TTAA 1 cut(s) 114
MspI CCGG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NdeI CATATG 1 cut(s) 121
NdeII GATC 2 cut(s) 41, 164
NlaIII CATG 2 cut(s) 36, 295
NlaIV GGNNCC 1 cut(s) 238
NspV TTCGAA 1 cut(s) 340
PagI TCATGA 1 cut(s) 291
PfeI GAWTC 2 cut(s) 327, 342
PkrI GCNGC 3 cut(s) 13, 16, 286
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
Ppu21I YACGTR 1 cut(s) 252
Psp1406I AACGTT 1 cut(s) 198
PspCI CACGTG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 12, 15, 285
Sau3AI GATC 2 cut(s) 41, 164
SetI ASST 5 cut(s) 153, 201, 229, 254, 367
SfuI TTCGAA 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 2 cut(s) 201, 254
TaqI TCGA 2 cut(s) 340, 345
TfiI GAWTC 2 cut(s) 327, 342
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 30, 191
TseI GCWGC 3 cut(s) 11, 14, 284
TspDTI ATGAA 3 cut(s) 21, 104, 308
TspRI CASTG 2 cut(s) 30, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.