RLG00000022998

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005452
Physical Location & Seq
Reverse (-)
16459859 .. 16461455
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022998

Sequence Viewer

Length: 702 bp
ATGGCAACAGCCTCAGCAACAGTCTCACCAGCAATGTTCACCACCACTACCACAGTGGCCAAGTCTATGAGGAAACCATCAAACAACGTGCATTACATTTCAGGAGTCAATTCCTTTTCTGGACTCAAGGCTCACAATAGTGTGGCCTCTCTTGGTCTTCCTCAGTGTACTGATCAATCCTTTGCTAAGATTGTGAGCTCCTTAAGAACTCCATCGCAGAACAAGGGCAGAGGTGGAGGTGCACTATCATCTACCTGCAATGCAATTGGTGAGATTTTCAAGATTGCAGCAATCATGAATGGACTCACTCTTGTTGGAGTTGCAGTTGGATTTGTACTTCTCCGAATCGAAGCATCTGTGGAGGAGGCAGCTGAGATGGCCTTCAAGGATAAGGATATCCAAGAATGGAAATCCCACAATCACTCTTCTCCTAGCATTTCTGGGAACCCATTTGATCCCATTCTATTGGACCGTGCTACAACAAAGCTGGCCATTGCATTTCTAGGACCCTTTCTGGCTCTGTTTTTCTTTGCTGTTCATTGTAAGAATAGTGATGTCACGGTAACCAAAGATCCTGTGGGGAAGTTCCCATATGTCATAGCGTATTCTCCAACAGAGCCAATTCTCCCATCCCAACCGAAAGTTGATCCCACCTTTAGGGGGTGTGGATGTAACCCCTGTTATCTTGTTTGGATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

234

Amino Acids

24.83

Weight (kDa)

8.73

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PetM PF08041 90 - 117 1.9e-11 PetM family of cytochrome b6f complex subunit 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AclWI GGATC 3 cut(s) 449, 566, 641
AcoI YGGCCR 2 cut(s) 57, 489
AfaI GTAC 2 cut(s) 169, 336
AfiI CCNNNNNNNGG 2 cut(s) 657, 660
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 2 cut(s) 280, 385
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 3 cut(s) 198, 371, 487
AluI AGCT 3 cut(s) 198, 371, 487
Alw21I GWGCWC 2 cut(s) 200, 244
Alw26I GTCTC 1 cut(s) 28
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 3 cut(s) 449, 566, 641
AoxI GGCC 4 cut(s) 57, 144, 378, 489
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 287, 368
AspS9I GGNCC 2 cut(s) 469, 506
AsuHPI GGTGA 3 cut(s) 18, 31, 281
AvaII GGWCC 2 cut(s) 469, 506
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 2 cut(s) 59, 491
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 200, 244
BbvCI CCTCAGC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 299, 380
BccI CCATC 4 cut(s) 85, 220, 370, 637
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 2 cut(s) 432, 503
BfrI CTTAAG 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 2 cut(s) 288, 369
BlsI GCNGC 2 cut(s) 289, 370
Bme18I GGWCC 2 cut(s) 469, 506
BmgT120I GGNCC 2 cut(s) 469, 506
BmiI GGNNCC 2 cut(s) 446, 508
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 657, 660
Bse3DI GCAATG 3 cut(s) 39, 265, 492
BseGI GGATG 2 cut(s) 629, 674
BseLI CCNNNNNNNGG 2 cut(s) 657, 660
BseMI GCAATG 3 cut(s) 39, 265, 492
BseMII CTCAG 3 cut(s) 27, 176, 363
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 2 cut(s) 299, 380
BshFI GGCC 4 cut(s) 59, 146, 380, 491
BsiHKAI GWGCWC 2 cut(s) 200, 244
BslI CCNNNNNNNGG 2 cut(s) 657, 660
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 4 cut(s) 59, 146, 380, 491
Bsp1286I GDGCHC 2 cut(s) 200, 244
Bsp143I GATC 4 cut(s) 172, 454, 571, 646
BspANI GGCC 4 cut(s) 59, 146, 380, 491
BspCNI CTCAG 3 cut(s) 26, 175, 364
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 446, 508
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 3 cut(s) 449, 566, 641
BspTI CTTAAG 1 cut(s) 202
BsrDI GCAATG 3 cut(s) 39, 265, 492
BssMI GATC 4 cut(s) 172, 454, 571, 646
Bst4CI ACNGT 4 cut(s) 22, 55, 473, 562
Bst6I CTCTTC 1 cut(s) 430
BstAFI CTTAAG 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 4 cut(s) 13, 162, 186, 372
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 2 cut(s) 629, 674
BstKTI GATC 4 cut(s) 175, 457, 574, 649
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 4 cut(s) 172, 454, 571, 646
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 562
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 299, 380
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 571
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 571
BsuRI GGCC 4 cut(s) 59, 146, 380, 491
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 629, 674
BtsIMutI CAGTG 2 cut(s) 60, 170
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 489
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 469, 506
Csp6I GTAC 2 cut(s) 168, 335
CviAII CATG 1 cut(s) 295
CviQI GTAC 2 cut(s) 168, 335
DdeI CTNAG 4 cut(s) 13, 162, 186, 372
DpnI GATC 4 cut(s) 174, 456, 573, 648
DpnII GATC 4 cut(s) 172, 454, 571, 646
EaeI YGGCCR 2 cut(s) 57, 489
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 469, 506
Eco53kI GAGCTC 1 cut(s) 198
Eco91I GGTNACC 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 506
EcoO65I GGTNACC 1 cut(s) 562
EcoRV GATATC 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 1 cut(s) 298
FaiI YATR 5 cut(s) 68, 296, 592, 594, 599
FatI CATG 1 cut(s) 294
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 288, 369
FokI GGATG 2 cut(s) 616, 681
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 288, 369
FspBI CTAG 2 cut(s) 432, 503
GluI GCNGC 2 cut(s) 288, 369
HaeIII GGCC 4 cut(s) 59, 146, 380, 491
Hin1II CATG 1 cut(s) 298
HinfI GANTC 4 cut(s) 105, 123, 303, 345
HphI GGTGA 3 cut(s) 18, 31, 281
Hpy166II GTNNAC 3 cut(s) 39, 168, 242
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 4 cut(s) 102, 120, 280, 295
Hpy8I GTNNAC 3 cut(s) 39, 168, 242
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 4 cut(s) 22, 55, 473, 562
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 7 cut(s) 91, 242, 258, 263, 287, 323, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 4 cut(s) 13, 162, 186, 372
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 172, 454, 571, 646
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 9 cut(s) 42, 87, 105, 268, 426, 473, 500, 588, 691
Lsp1109I GCAGC 2 cut(s) 299, 380
LweI GCATC 1 cut(s) 362
MaeI CTAG 2 cut(s) 432, 503
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 3 cut(s) 556, 562, 671
MalI GATC 4 cut(s) 174, 456, 573, 648
MboI GATC 4 cut(s) 172, 454, 571, 646
MboII GAAGA 2 cut(s) 149, 417
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 2 cut(s) 200, 244
MlsI TGGCCA 2 cut(s) 59, 491
MluCI AATT 3 cut(s) 109, 264, 621
MluNI TGGCCA 2 cut(s) 59, 491
MlyI GAGTC 3 cut(s) 114, 117, 297
MmeI TCCRAC 3 cut(s) 295, 307, 635
MnlI CCTC 8 cut(s) 22, 63, 157, 171, 224, 230, 355, 358
Mox20I TGGCCA 2 cut(s) 59, 491
MscI TGGCCA 2 cut(s) 59, 491
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 138
Msp20I TGGCCA 2 cut(s) 59, 491
MspA1I CMGCKG 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 202
MunI CAATTG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeI CATATG 1 cut(s) 592
NdeII GATC 4 cut(s) 172, 454, 571, 646
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 2 cut(s) 446, 508
NmuCI GTSAC 1 cut(s) 556
OliI CACNNNNGTG 1 cut(s) 138
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 2 cut(s) 289, 370
PleI GAGTC 3 cut(s) 113, 117, 297
PpsI GAGTC 3 cut(s) 113, 117, 297
PpuMI RGGWCCY 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 506
PspEI GGTNACC 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 446, 508
PspPI GGNCC 2 cut(s) 469, 506
PspPPI RGGWCCY 1 cut(s) 506
PsuI RGATCY 1 cut(s) 571
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 2 cut(s) 169, 336
RsaNI GTAC 2 cut(s) 168, 335
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 2 cut(s) 288, 369
Sau3AI GATC 4 cut(s) 172, 454, 571, 646
Sau96I GGNCC 2 cut(s) 469, 506
SchI GAGTC 3 cut(s) 114, 117, 297
SduI GDGCHC 2 cut(s) 200, 244
SetI ASST 8 cut(s) 90, 200, 235, 241, 257, 373, 489, 656
SfaNI GCATC 1 cut(s) 362
SinI GGWCC 2 cut(s) 469, 506
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 125, 202
SmoI CTYRAG 2 cut(s) 125, 202
Sse9I AATT 3 cut(s) 109, 264, 621
SspMI CTAG 2 cut(s) 432, 503
SstI GAGCTC 1 cut(s) 200
TaaI ACNGT 4 cut(s) 22, 55, 473, 562
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 348
TasI AATT 3 cut(s) 109, 264, 621
TatI WGTACW 2 cut(s) 167, 334
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 2 cut(s) 60, 170
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 2 cut(s) 287, 368
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 2 cut(s) 311, 527
TspRI CASTG 2 cut(s) 60, 170
Vha464I CTTAAG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 469, 506
XcmI CCANNNNNNNNNTGG 2 cut(s) 52, 574
XspI CTAG 2 cut(s) 432, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.