RLG00000014497

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005452
Physical Location & Seq
Reverse (-)
54000226 .. 54000990
765 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014497

Sequence Viewer

Length: 480 bp
ATGGTGTTGTGTTTGAGTTTTGGAAGCTGGGGAAAATTAGACGCTATTGTTGCACAATTGATGATGGATGGCAGGCTACATCGCTCCAATTTAATTTTCACAATGGCAACAGCCTCAGCAACACTCTCACCAGCCATGTTGACCACCACAGCCACAGTTGCTAAATCTGTGAGGAAACCAGCAAACCAAGTCCACTATATTTCAGGGCTCAACTCATTTTCTGGACTCAAAGCTCACAACACTGTTGCCTCTCTTGGTCTTCCTCAGTGCACTGACCAGTCCTTTGCCAACATAGTGAGCTCCTTGAGAGCTCCTTCACAGAACCGAGGCAGAGGTGGAGGTGCACTCTCATCTACCTGCAATGCAATTGGTGAGATTTTCAAGATTGCAGCAATCATGAATGGACTCACTCTTGTTGGAGTTGCAGTGGGATTCGTTCTTCTTCGAATTGAAGCCTTCGTGGAGGAGTCAGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

160

Amino Acids

16.63

Weight (kDa)

9.3

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PetM PF08041 124 - 151 2.3e-11 PetM family of cytochrome b6f complex subunit 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
AgsI TTSAA 2 cut(s) 382, 452
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 5 cut(s) 27, 233, 300, 311, 473
AluI AGCT 5 cut(s) 27, 233, 300, 311, 473
Alw21I GWGCWC 4 cut(s) 272, 302, 313, 346
Alw44I GTGCAC 2 cut(s) 268, 342
ApaLI GTGCAC 2 cut(s) 268, 342
ApeKI GCWGC 1 cut(s) 389
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AsuHPI GGTGA 2 cut(s) 120, 383
AsuII TTCGAA 1 cut(s) 445
BaeGI GKGCMC 2 cut(s) 272, 346
BanII GRGCYC 3 cut(s) 210, 302, 313
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 4 cut(s) 272, 302, 313, 346
BbvCI CCTCAGC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 401
BccI CCATC 2 cut(s) 58, 62
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 330, 362
Bpu10I CCTNAGC 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 129, 278, 465
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 2 cut(s) 272, 346
BseXI GCAGC 1 cut(s) 401
BseYI CCCAGC 1 cut(s) 27
BsiHKAI GWGCWC 4 cut(s) 272, 302, 313, 346
Bsp119I TTCGAA 1 cut(s) 445
Bsp1286I GDGCHC 5 cut(s) 210, 272, 302, 313, 346
BspCNI CTCAG 3 cut(s) 128, 277, 466
BspHI TCATGA 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 157, 244
BstBI TTCGAA 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 115, 264, 474
BstF5I GGATG 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 50, 158
BstSLI GKGCMC 2 cut(s) 272, 346
BstV1I GCAGC 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 4 cut(s) 240, 270, 272, 432
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 396
CseI GACGC 1 cut(s) 50
CviAII CATG 2 cut(s) 136, 397
DdeI CTNAG 3 cut(s) 115, 264, 474
Ecl136II GAGCTC 2 cut(s) 300, 311
Eco24I GRGCYC 3 cut(s) 210, 302, 313
Eco53kI GAGCTC 2 cut(s) 300, 311
EcoICRI GAGCTC 2 cut(s) 300, 311
EcoT38I GRGCYC 3 cut(s) 210, 302, 313
FaeI CATG 2 cut(s) 139, 400
FaiI YATR 4 cut(s) 137, 198, 293, 398
FatI CATG 2 cut(s) 135, 396
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 3 cut(s) 210, 302, 313
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
GsaI CCCAGC 1 cut(s) 31
HgaI GACGC 1 cut(s) 50
Hin1II CATG 2 cut(s) 139, 400
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 4 cut(s) 225, 405, 432, 467
HphI GGTGA 2 cut(s) 120, 383
Hpy166II GTNNAC 4 cut(s) 141, 193, 270, 344
Hpy188III TCNNGA 3 cut(s) 222, 382, 397
Hpy8I GTNNAC 4 cut(s) 141, 193, 270, 344
HpyAV CCTTC 2 cut(s) 324, 466
HpyCH4III ACNGT 2 cut(s) 157, 244
HpyCH4V TGCA 7 cut(s) 53, 270, 344, 360, 365, 389, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 158
HpyF3I CTNAG 3 cut(s) 115, 264, 474
Hsp92II CATG 2 cut(s) 139, 400
LmnI GCTCC 3 cut(s) 89, 305, 316
LpnPI CCDG 8 cut(s) 13, 58, 144, 189, 192, 207, 290, 370
Lsp1109I GCAGC 1 cut(s) 401
MboII GAAGA 3 cut(s) 251, 431, 434
MfeI CAATTG 2 cut(s) 56, 366
MhlI GDGCHC 5 cut(s) 210, 272, 302, 313, 346
MluCI AATT 6 cut(s) 35, 56, 88, 93, 366, 447
MlyI GAGTC 3 cut(s) 219, 399, 476
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 8 cut(s) 124, 165, 259, 273, 320, 326, 332, 457
MseI TTAA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 473
MunI CAATTG 2 cut(s) 56, 366
MwoI GCNNNNNNNGC 2 cut(s) 50, 158
NlaIII CATG 2 cut(s) 139, 400
NspV TTCGAA 1 cut(s) 445
PagI TCATGA 1 cut(s) 396
PfeI GAWTC 1 cut(s) 432
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 3 cut(s) 219, 399, 475
PpsI GAGTC 3 cut(s) 219, 399, 475
Psp124BI GAGCTC 2 cut(s) 302, 313
PspFI CCCAGC 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 473
SacI GAGCTC 2 cut(s) 302, 313
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 390
SchI GAGTC 3 cut(s) 219, 399, 476
SduI GDGCHC 5 cut(s) 210, 272, 302, 313, 346
SetI ASST 8 cut(s) 29, 235, 302, 313, 337, 343, 359, 475
SfuI TTCGAA 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 6 cut(s) 35, 56, 88, 93, 366, 447
SstI GAGCTC 2 cut(s) 302, 313
TaaI ACNGT 2 cut(s) 157, 244
TaqI TCGA 1 cut(s) 445
TasI AATT 6 cut(s) 35, 56, 88, 93, 366, 447
TfiI GAWTC 1 cut(s) 432
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 4 cut(s) 247, 272, 277, 432
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 413
TspRI CASTG 4 cut(s) 247, 272, 277, 432
VneI GTGCAC 2 cut(s) 268, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.