Rh6DG091000

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005452
Physical Location & Seq
Forward (+)
10657031 .. 10659632
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG091000.1

Sequence Viewer

Length: 378 bp
ATGGCAACAGCCTCGGCAACATTCTCACCAGCCATGTTGACCACCACAGCCACAGTTGCTAAATCTGTGAGGAAACCAGCAAACCAAGTCCACTATATTTCAGGGCTCAACTCATTTTCTGGACTCAAAGCTCACAACACTGTTGCCTCTCTTGGTCTTCCTCAGTGCACTGACCAGTCCTTTGCCAACATAGTGAGCTCCTTGAGAGCTCCTTCACAGAACCGAGGCAGAGGTGGAGGTGCACTCTCATCTACCTGCAATGCAATTGGTGAGATTTTCAAGATTGCAGCAATCATGAATGGACTCACTCTTGTTGGAGTTGCAGTGGGATTTGTTCTTCTTCGAATCGAAGCCTTCGTGGAGGAGTCAGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

125

Amino Acids

12.86

Weight (kDa)

9.24

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PetM PF08041 90 - 117 1.5e-11 PetM family of cytochrome b6f complex subunit 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AgsI TTSAA 1 cut(s) 280
AluBI AGCT 4 cut(s) 131, 198, 209, 371
AluI AGCT 4 cut(s) 131, 198, 209, 371
Alw21I GWGCWC 4 cut(s) 170, 200, 211, 244
Alw44I GTGCAC 2 cut(s) 166, 240
ApaLI GTGCAC 2 cut(s) 166, 240
ApeKI GCWGC 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AsuHPI GGTGA 2 cut(s) 18, 281
AsuII TTCGAA 1 cut(s) 343
BaeGI GKGCMC 2 cut(s) 170, 244
BanII GRGCYC 3 cut(s) 108, 200, 211
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 4 cut(s) 170, 200, 211, 244
BbvI GCAGC 1 cut(s) 299
BcgI CGANNNNNNTGC 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 228, 260
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 12, 223
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 12, 223
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 176, 363
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 170, 244
BseXI GCAGC 1 cut(s) 299
BsiHKAI GWGCWC 4 cut(s) 170, 200, 211, 244
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 5 cut(s) 108, 170, 200, 211, 244
BspCNI CTCAG 2 cut(s) 175, 364
BspHI TCATGA 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 12, 223
Bst4CI ACNGT 2 cut(s) 55, 142
BstBI TTCGAA 1 cut(s) 343
BstDEI CTNAG 2 cut(s) 162, 372
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSLI GKGCMC 2 cut(s) 170, 244
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 138, 168, 170, 330
BveI ACCTGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 294
CviAII CATG 2 cut(s) 34, 295
CviJI RGCY 9 cut(s) 11, 32, 50, 106, 131, 198, 209, 353, 371
CviKI_1 RGCY 9 cut(s) 11, 32, 50, 106, 131, 198, 209, 353, 371
DdeI CTNAG 2 cut(s) 162, 372
Ecl136II GAGCTC 2 cut(s) 198, 209
Eco24I GRGCYC 3 cut(s) 108, 200, 211
Eco53kI GAGCTC 2 cut(s) 198, 209
EcoICRI GAGCTC 2 cut(s) 198, 209
EcoT38I GRGCYC 3 cut(s) 108, 200, 211
FaeI CATG 2 cut(s) 37, 298
FaiI YATR 4 cut(s) 35, 96, 191, 296
FatI CATG 2 cut(s) 33, 294
Fnu4HI GCNGC 1 cut(s) 288
FriOI GRGCYC 3 cut(s) 108, 200, 211
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
Hin1II CATG 2 cut(s) 37, 298
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 4 cut(s) 123, 303, 345, 365
HphI GGTGA 2 cut(s) 18, 281
Hpy166II GTNNAC 4 cut(s) 39, 91, 168, 242
Hpy188III TCNNGA 3 cut(s) 120, 280, 295
Hpy8I GTNNAC 4 cut(s) 39, 91, 168, 242
HpyAV CCTTC 2 cut(s) 222, 364
HpyCH4III ACNGT 2 cut(s) 55, 142
HpyCH4V TGCA 6 cut(s) 168, 242, 258, 263, 287, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 162, 372
Hsp92II CATG 2 cut(s) 37, 298
LmnI GCTCC 2 cut(s) 203, 214
LpnPI CCDG 6 cut(s) 42, 87, 90, 105, 188, 268
Lsp1109I GCAGC 1 cut(s) 299
MboII GAAGA 3 cut(s) 149, 329, 332
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 5 cut(s) 108, 170, 200, 211, 244
MluCI AATT 1 cut(s) 264
MlyI GAGTC 3 cut(s) 117, 297, 374
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 8 cut(s) 22, 63, 157, 171, 218, 224, 230, 355
MspA1I CMGCKG 1 cut(s) 371
MunI CAATTG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 37, 298
NspV TTCGAA 1 cut(s) 343
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 3 cut(s) 117, 297, 373
PpsI GAGTC 3 cut(s) 117, 297, 373
Psp124BI GAGCTC 2 cut(s) 200, 211
PvuII CAGCTG 1 cut(s) 371
SacI GAGCTC 2 cut(s) 200, 211
SatI GCNGC 1 cut(s) 288
SchI GAGTC 3 cut(s) 117, 297, 374
SduI GDGCHC 5 cut(s) 108, 170, 200, 211, 244
SetI ASST 7 cut(s) 133, 200, 211, 235, 241, 257, 373
SfuI TTCGAA 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 264
SstI GAGCTC 2 cut(s) 200, 211
TaaI ACNGT 2 cut(s) 55, 142
TaqI TCGA 2 cut(s) 343, 348
TasI AATT 1 cut(s) 264
TfiI GAWTC 1 cut(s) 345
TscAI CASTG 4 cut(s) 145, 170, 175, 330
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 4 cut(s) 145, 170, 175, 330
VneI GTGCAC 2 cut(s) 166, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.