FvH4_7g04430

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005452
Physical Location & Seq
Forward (+)
5000660 .. 5001561
902 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04430.t1

Sequence Viewer

Length: 378 bp
ATGGCAACAGCCTCAGCAACACTCTCCCCAGCCATGTTCACCACCACTGCTACTGTTGCCAAATCTGTGAAGAAATCAGCAAACAGAGTCCACTACATTTCAGGGCTCAACTCCTTTTCTGGACTCAAAGCTCACAACACTGTTGCATCTCTTGGCCTTCCTCAGTGCACTGACCAGTCATTTGCCAACATTGTGAGCTCCTTGAGAGCTCCTTCACAGAACCAAGGCAGAGGTGGAGGTGCACTCTCATCAACCTGCAATGCAATTGGTGAGATTTTCAAGATTGCAGCAATCATGAATGGACTCACTCTTGTTGGAGTTGCAGTGGGATTCGTACTTCTTCGAATAGAAGCCTTCGTGGAGGAGTCAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

126

Amino Acids

12.88

Weight (kDa)

8.74

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PetM PF08041 90 - 117 1.5e-11 PetM family of cytochrome b6f complex subunit 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AfaI GTAC 1 cut(s) 336
AgsI TTSAA 1 cut(s) 280
AluBI AGCT 3 cut(s) 131, 198, 209
AluI AGCT 3 cut(s) 131, 198, 209
Alw21I GWGCWC 4 cut(s) 170, 200, 211, 244
Alw44I GTGCAC 2 cut(s) 166, 240
AoxI GGCC 1 cut(s) 154
ApaLI GTGCAC 2 cut(s) 166, 240
ApeKI GCWGC 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AsuHPI GGTGA 2 cut(s) 31, 281
AsuII TTCGAA 1 cut(s) 343
BaeGI GKGCMC 2 cut(s) 170, 244
BanII GRGCYC 3 cut(s) 108, 200, 211
Bbv12I GWGCWC 4 cut(s) 170, 200, 211, 244
BbvCI CCTCAGC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmsI GCATC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 228, 260
Bpu10I CCTNAGC 1 cut(s) 13
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 27, 176
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 170, 244
BseXI GCAGC 1 cut(s) 299
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 156
BsiHKAI GWGCWC 4 cut(s) 170, 200, 211, 244
BsnI GGCC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 5 cut(s) 108, 170, 200, 211, 244
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 26, 175
BspHI TCATGA 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 55, 142
Bst6I CTCTTC 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 343
BstDEI CTNAG 2 cut(s) 13, 162
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSLI GKGCMC 2 cut(s) 170, 244
BstV1I GCAGC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 156
BtsI GCAGTG 2 cut(s) 45, 330
BtsIMutI CAGTG 5 cut(s) 45, 138, 168, 170, 330
BveI ACCTGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 294
Csp6I GTAC 1 cut(s) 335
CviAII CATG 2 cut(s) 34, 295
CviJI RGCY 8 cut(s) 11, 32, 106, 131, 156, 198, 209, 353
CviKI_1 RGCY 8 cut(s) 11, 32, 106, 131, 156, 198, 209, 353
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 2 cut(s) 13, 162
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Ecl136II GAGCTC 2 cut(s) 198, 209
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 3 cut(s) 108, 200, 211
Eco53kI GAGCTC 2 cut(s) 198, 209
EcoICRI GAGCTC 2 cut(s) 198, 209
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 3 cut(s) 108, 200, 211
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 37, 298
FaiI YATR 2 cut(s) 35, 296
FatI CATG 2 cut(s) 33, 294
Fnu4HI GCNGC 1 cut(s) 288
FriOI GRGCYC 3 cut(s) 108, 200, 211
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 156
Hin1II CATG 2 cut(s) 37, 298
HinfI GANTC 5 cut(s) 87, 123, 303, 330, 365
HphI GGTGA 2 cut(s) 31, 281
Hpy166II GTNNAC 4 cut(s) 39, 91, 168, 242
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 3 cut(s) 120, 280, 295
Hpy8I GTNNAC 4 cut(s) 39, 91, 168, 242
HpyAV CCTTC 3 cut(s) 167, 222, 364
HpyCH4III ACNGT 2 cut(s) 55, 142
HpyCH4V TGCA 7 cut(s) 146, 168, 242, 258, 263, 287, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 13, 162
Hsp92II CATG 2 cut(s) 37, 298
LmnI GCTCC 2 cut(s) 203, 214
LpnPI CCDG 5 cut(s) 42, 87, 105, 188, 268
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 155
MboII GAAGA 2 cut(s) 82, 332
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 5 cut(s) 108, 170, 200, 211, 244
MluCI AATT 1 cut(s) 264
MlyI GAGTC 4 cut(s) 96, 117, 297, 374
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 5 cut(s) 22, 171, 224, 230, 355
MunI CAATTG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 37, 298
NspV TTCGAA 1 cut(s) 343
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 4 cut(s) 95, 117, 297, 373
PpsI GAGTC 4 cut(s) 95, 117, 297, 373
Psp124BI GAGCTC 2 cut(s) 200, 211
PspFI CCCAGC 1 cut(s) 28
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SacI GAGCTC 2 cut(s) 200, 211
SatI GCNGC 1 cut(s) 288
SchI GAGTC 4 cut(s) 96, 117, 297, 374
SduI GDGCHC 5 cut(s) 108, 170, 200, 211, 244
SetI ASST 6 cut(s) 133, 200, 211, 235, 241, 257
SfaNI GCATC 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 264
SstI GAGCTC 2 cut(s) 200, 211
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 55, 142
TaqI TCGA 1 cut(s) 343
TasI AATT 1 cut(s) 264
TfiI GAWTC 1 cut(s) 330
TscAI CASTG 5 cut(s) 52, 145, 170, 175, 330
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 5 cut(s) 52, 145, 170, 175, 330
VneI GTGCAC 2 cut(s) 166, 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.