FvH4_1g27200

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005452
Physical Location & Seq
Forward (+)
18944617 .. 18945867
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27200.t1

Sequence Viewer

Length: 378 bp
ATGGCAACAGCTTCAGCAACGGTGTCACCAGCAATGTTCACCAACACTACCACAGTGGCCAAGTCTATGAGGAAATCATCAAACAATGTGCATTACATTTCAGGAGTCAATTCCTTTTCTGGACTCAAAGCGCATAATAGTGTGGCCAGTCTTGGTCTTCCTCAGTGTACTGAGCAATCCTTTGCTAAGATTGTGAGCTCCCTGAGAACTCCATCACAGAACAAGGGCAGAAGTGGAGGTGCACTATCATCTACCTGCAACGCTATTGGTGAGATTTTCAAGATTGCAGCAATCATGAATGCACTCACTCTTGTTGGAGTTGCAGTCGGATTCGTTCTTCTCCGAATCGAAGCATCTGTGGAGGAGGCAGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

126

Amino Acids

12.88

Weight (kDa)

9.44

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PetM PF08041 90 - 117 3.6e-12 PetM family of cytochrome b6f complex subunit 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AcoI YGGCCR 2 cut(s) 57, 144
AfaI GTAC 1 cut(s) 169
AgsI TTSAA 1 cut(s) 280
AluBI AGCT 3 cut(s) 11, 198, 371
AluI AGCT 3 cut(s) 11, 198, 371
Alw21I GWGCWC 2 cut(s) 200, 244
Alw44I GTGCAC 1 cut(s) 240
AoxI GGCC 2 cut(s) 57, 144
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 287, 368
AspLEI GCGC 1 cut(s) 133
AsuHPI GGTGA 3 cut(s) 18, 31, 281
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 2 cut(s) 59, 146
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 200, 244
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 2 cut(s) 288, 369
BlsI GCNGC 2 cut(s) 289, 370
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 4 cut(s) 162, 176, 194, 363
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 2 cut(s) 59, 146
BsiHKAI GWGCWC 2 cut(s) 200, 244
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 59, 146
Bsp1286I GDGCHC 2 cut(s) 200, 244
BspANI GGCC 2 cut(s) 59, 146
BspCNI CTCAG 4 cut(s) 163, 175, 195, 364
BspHI TCATGA 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 22, 55
BstDEI CTNAG 5 cut(s) 162, 171, 186, 203, 372
BstHHI GCGC 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 59, 146
BtsIMutI CAGTG 2 cut(s) 60, 170
BveI ACCTGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 294
CfoI GCGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 168
CviAII CATG 1 cut(s) 295
CviJI RGCY 5 cut(s) 11, 59, 146, 198, 371
CviKI_1 RGCY 5 cut(s) 11, 59, 146, 198, 371
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 5 cut(s) 162, 171, 186, 203, 372
EaeI YGGCCR 2 cut(s) 57, 144
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 1 cut(s) 298
FaiI YATR 3 cut(s) 68, 135, 296
FatI CATG 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 288, 369
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 288, 369
GlaI GCGC 1 cut(s) 132
GluI GCNGC 2 cut(s) 288, 369
HaeIII GGCC 2 cut(s) 59, 146
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 4 cut(s) 105, 123, 330, 345
HphI GGTGA 3 cut(s) 18, 31, 281
Hpy166II GTNNAC 3 cut(s) 39, 168, 242
Hpy188I TCNGA 2 cut(s) 329, 344
Hpy188III TCNNGA 4 cut(s) 102, 120, 280, 295
Hpy8I GTNNAC 3 cut(s) 39, 168, 242
HpyCH4III ACNGT 2 cut(s) 22, 55
HpyCH4V TGCA 6 cut(s) 91, 242, 258, 287, 302, 323
HpyF3I CTNAG 5 cut(s) 162, 171, 186, 203, 372
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 6 cut(s) 42, 87, 105, 160, 215, 268
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 24
MboII GAAGA 2 cut(s) 149, 329
MhlI GDGCHC 2 cut(s) 200, 244
MlsI TGGCCA 2 cut(s) 59, 146
MluCI AATT 1 cut(s) 109
MluNI TGGCCA 2 cut(s) 59, 146
MlyI GAGTC 2 cut(s) 114, 117
MmeI TCCRAC 2 cut(s) 295, 307
MnlI CCTC 5 cut(s) 63, 171, 230, 355, 358
Mox20I TGGCCA 2 cut(s) 59, 146
MscI TGGCCA 2 cut(s) 59, 146
MslI CAYNNNNRTG 1 cut(s) 138
Msp20I TGGCCA 2 cut(s) 59, 146
MspA1I CMGCKG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 304
NlaIII CATG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 24
PagI TCATGA 1 cut(s) 294
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 330, 345
PkrI GCNGC 2 cut(s) 289, 370
PleI GAGTC 2 cut(s) 113, 117
PpsI GAGTC 2 cut(s) 113, 117
Psp124BI GAGCTC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 1 cut(s) 200
SatI GCNGC 2 cut(s) 288, 369
SchI GAGTC 2 cut(s) 114, 117
SduI GDGCHC 2 cut(s) 200, 244
SetI ASST 5 cut(s) 13, 200, 241, 257, 373
SfaNI GCATC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 109
SstI GAGCTC 1 cut(s) 200
TaaI ACNGT 2 cut(s) 22, 55
TaqI TCGA 1 cut(s) 348
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 2 cut(s) 330, 345
TscAI CASTG 2 cut(s) 60, 170
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 2 cut(s) 287, 368
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 2 cut(s) 60, 170
VneI GTGCAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.