FvH4_2g07330

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005452
Physical Location & Seq
Forward (+)
6051320 .. 6052247
928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07330.t1

Sequence Viewer

Length: 378 bp
ATGGCAACAGCCTCAGCAACACTCTCACCAGCCATGTTCACCACCACAGCCACAGTTGCCAAATCTGTTAGGAAGCCAGCAAACAAAGTCCACTACATTTCAGGGCTCAACTCCTTTTCTGGACTCAAAGCTCACAACAGTGTTGCCTCTCTTGGTCTTCCTCAGTGCACTGATCTGTCTTTTGCTAACATTGTGAGCTCCTTGAGAGCTCCTTCACAGAACCAAGGCAGAGGTGGAGGGGCACTCTCATCTACCTGCAATGCAATTGGTGAGATTTTCAAGATTGCAGCAATCATGAATGGACTCACTCTTGTTGGAGTTGCAGTGGGATTCGTTCTTCTTCGAATCGAAGCCTTCGTGGAGGAGTCAGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

126

Amino Acids

12.8

Weight (kDa)

9.18

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PetM PF08041 90 - 117 1.5e-11 PetM family of cytochrome b6f complex subunit 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AgsI TTSAA 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 4 cut(s) 131, 198, 209, 371
AluI AGCT 4 cut(s) 131, 198, 209, 371
Alw21I GWGCWC 3 cut(s) 170, 200, 211
Alw44I GTGCAC 1 cut(s) 166
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 287
AsuHPI GGTGA 3 cut(s) 18, 31, 281
AsuII TTCGAA 1 cut(s) 343
BaeGI GKGCMC 2 cut(s) 170, 244
BanII GRGCYC 3 cut(s) 108, 200, 211
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 3 cut(s) 170, 200, 211
BbvCI CCTCAGC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 228, 260
Bpu10I CCTNAGC 1 cut(s) 13
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 3 cut(s) 27, 176, 363
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 170, 244
BseXI GCAGC 1 cut(s) 299
BsiHKAI GWGCWC 3 cut(s) 170, 200, 211
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 5 cut(s) 108, 170, 200, 211, 244
Bsp143I GATC 1 cut(s) 172
BspCNI CTCAG 3 cut(s) 26, 175, 364
BspHI TCATGA 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 55, 140
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 13, 162, 372
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSLI GKGCMC 2 cut(s) 170, 244
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 145, 168, 170, 330
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 294
CviAII CATG 2 cut(s) 34, 295
DdeI CTNAG 3 cut(s) 13, 162, 372
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Ecl136II GAGCTC 2 cut(s) 198, 209
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 3 cut(s) 108, 200, 211
Eco53kI GAGCTC 2 cut(s) 198, 209
EcoICRI GAGCTC 2 cut(s) 198, 209
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 3 cut(s) 108, 200, 211
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 37, 298
FaiI YATR 2 cut(s) 35, 296
FatI CATG 2 cut(s) 33, 294
Fnu4HI GCNGC 1 cut(s) 288
FriOI GRGCYC 3 cut(s) 108, 200, 211
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
Hin1II CATG 2 cut(s) 37, 298
HinfI GANTC 5 cut(s) 123, 303, 330, 345, 365
HphI GGTGA 3 cut(s) 18, 31, 281
Hpy166II GTNNAC 3 cut(s) 39, 91, 168
Hpy188III TCNNGA 3 cut(s) 120, 280, 295
Hpy8I GTNNAC 3 cut(s) 39, 91, 168
HpyAV CCTTC 2 cut(s) 222, 364
HpyCH4III ACNGT 2 cut(s) 55, 140
HpyCH4V TGCA 5 cut(s) 168, 258, 263, 287, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 13, 162, 372
Hsp92II CATG 2 cut(s) 37, 298
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 203, 214
LpnPI CCDG 5 cut(s) 42, 87, 90, 105, 268
Lsp1109I GCAGC 1 cut(s) 299
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 149, 329, 332
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 5 cut(s) 108, 170, 200, 211, 244
MluCI AATT 1 cut(s) 264
MlyI GAGTC 3 cut(s) 117, 297, 374
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 6 cut(s) 22, 157, 171, 224, 230, 355
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 371
MunI CAATTG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 37, 298
NspV TTCGAA 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 138
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PfeI GAWTC 2 cut(s) 330, 345
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 3 cut(s) 117, 297, 373
PpsI GAGTC 3 cut(s) 117, 297, 373
Psp124BI GAGCTC 2 cut(s) 200, 211
PvuII CAGCTG 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 2 cut(s) 200, 211
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 3 cut(s) 117, 297, 374
SduI GDGCHC 5 cut(s) 108, 170, 200, 211, 244
SetI ASST 6 cut(s) 133, 200, 211, 235, 257, 373
SfuI TTCGAA 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 264
SstI GAGCTC 2 cut(s) 200, 211
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 55, 140
TaqI TCGA 2 cut(s) 343, 348
TasI AATT 1 cut(s) 264
TfiI GAWTC 2 cut(s) 330, 345
TscAI CASTG 4 cut(s) 145, 170, 175, 330
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 4 cut(s) 145, 170, 175, 330
VneI GTGCAC 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.