Rroxscaffold_7G00207290

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005452
Physical Location & Seq
Forward (+)
57178843 .. 57181511
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207290.1

Sequence Viewer

Length: 438 bp
ATGAGTGACAACTTGTTTGGATTGTGGGACATTGAGAATAGAAATCTGAGAATTTTCACAATGGCAACAGCCTCAGCAACACTCTCACCAGCCATGTTGACCACCACAGCCACAGTCGCTAAATCTGTGAGGAAACCAGCAAACCAAGTCCACTATATTTCAGGGCTCAACTCATTTTCTGGACTCAAAGCTCACAACACTGTTGCCTCTCTTGGTCTTCCTCAGTGCACTGACCAGTCCTTTGCCAACATAGTGAGCTCCTTGAGAGCTCCTTCACAGAACCGAGGCAGAGGTGGAGGTGCACTCTCATCTACCTGCAATGCAATTGGTGAGATTTTCAAGATTGCAGCAATCATGAATGGACTCACTCTTGTTGGAGTTGCAGTGGGATTCGTTCTTCTTCGAATCGAAGCCTTCGTGGAGGAGTCAGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

145

Amino Acids

15.26

Weight (kDa)

8.77

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PetM PF08041 110 - 137 1.9e-11 PetM family of cytochrome b6f complex subunit 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AcsI RAATTY 1 cut(s) 51
AgsI TTSAA 1 cut(s) 340
AluBI AGCT 4 cut(s) 191, 258, 269, 431
AluI AGCT 4 cut(s) 191, 258, 269, 431
Alw21I GWGCWC 4 cut(s) 230, 260, 271, 304
Alw44I GTGCAC 2 cut(s) 226, 300
ApaLI GTGCAC 2 cut(s) 226, 300
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 3 cut(s) 31, 224, 256
AsuHPI GGTGA 2 cut(s) 78, 341
AsuII TTCGAA 1 cut(s) 403
BaeGI GKGCMC 2 cut(s) 230, 304
BanII GRGCYC 3 cut(s) 168, 260, 271
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 4 cut(s) 230, 260, 271, 304
BbvCI CCTCAGC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 288, 320
Bpu10I CCTNAGC 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 4 cut(s) 38, 87, 236, 423
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 2 cut(s) 230, 304
BseXI GCAGC 1 cut(s) 359
BsiHKAI GWGCWC 4 cut(s) 230, 260, 271, 304
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 403
Bsp1286I GDGCHC 5 cut(s) 168, 230, 260, 271, 304
BspCNI CTCAG 4 cut(s) 39, 86, 235, 424
BspHI TCATGA 1 cut(s) 354
BspMI ACCTGC 1 cut(s) 323
BspT104I TTCGAA 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 115, 202
BstBI TTCGAA 1 cut(s) 403
BstDEI CTNAG 4 cut(s) 47, 73, 222, 432
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSLI GKGCMC 2 cut(s) 230, 304
BstV1I GCAGC 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 4 cut(s) 198, 228, 230, 390
BveI ACCTGC 1 cut(s) 323
CciI TCATGA 1 cut(s) 354
CviAII CATG 2 cut(s) 94, 355
CviJI RGCY 9 cut(s) 71, 92, 110, 166, 191, 258, 269, 413, 431
CviKI_1 RGCY 9 cut(s) 71, 92, 110, 166, 191, 258, 269, 413, 431
DdeI CTNAG 4 cut(s) 47, 73, 222, 432
Ecl136II GAGCTC 2 cut(s) 258, 269
Eco24I GRGCYC 3 cut(s) 168, 260, 271
Eco53kI GAGCTC 2 cut(s) 258, 269
EcoICRI GAGCTC 2 cut(s) 258, 269
EcoT38I GRGCYC 3 cut(s) 168, 260, 271
FaeI CATG 2 cut(s) 97, 358
FaiI YATR 4 cut(s) 95, 156, 251, 356
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 93, 354
Fnu4HI GCNGC 1 cut(s) 348
FriOI GRGCYC 3 cut(s) 168, 260, 271
Fsp4HI GCNGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 348
Hin1II CATG 2 cut(s) 97, 358
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 5 cut(s) 183, 363, 390, 405, 425
HphI GGTGA 2 cut(s) 78, 341
Hpy166II GTNNAC 4 cut(s) 99, 151, 228, 302
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 3 cut(s) 180, 340, 355
Hpy8I GTNNAC 4 cut(s) 99, 151, 228, 302
HpyAV CCTTC 2 cut(s) 282, 424
HpyCH4III ACNGT 2 cut(s) 115, 202
HpyCH4V TGCA 6 cut(s) 228, 302, 318, 323, 347, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 4 cut(s) 47, 73, 222, 432
Hsp92II CATG 2 cut(s) 97, 358
LmnI GCTCC 2 cut(s) 263, 274
LpnPI CCDG 6 cut(s) 102, 147, 150, 165, 248, 328
Lsp1109I GCAGC 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 3 cut(s) 209, 389, 392
MfeI CAATTG 1 cut(s) 324
MhlI GDGCHC 5 cut(s) 168, 230, 260, 271, 304
MluCI AATT 2 cut(s) 51, 324
MlyI GAGTC 3 cut(s) 177, 357, 434
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 8 cut(s) 82, 123, 217, 231, 278, 284, 290, 415
MspA1I CMGCKG 1 cut(s) 431
MunI CAATTG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 97, 358
NmuCI GTSAC 1 cut(s) 5
NspV TTCGAA 1 cut(s) 403
PagI TCATGA 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PfeI GAWTC 2 cut(s) 390, 405
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 3 cut(s) 177, 357, 433
PpsI GAGTC 3 cut(s) 177, 357, 433
Psp124BI GAGCTC 2 cut(s) 260, 271
PvuII CAGCTG 1 cut(s) 431
SacI GAGCTC 2 cut(s) 260, 271
SatI GCNGC 1 cut(s) 348
SchI GAGTC 3 cut(s) 177, 357, 434
SduI GDGCHC 5 cut(s) 168, 230, 260, 271, 304
SetI ASST 7 cut(s) 193, 260, 271, 295, 301, 317, 433
SfuI TTCGAA 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 2 cut(s) 51, 324
SstI GAGCTC 2 cut(s) 260, 271
TaaI ACNGT 2 cut(s) 115, 202
TaqI TCGA 2 cut(s) 403, 408
TasI AATT 2 cut(s) 51, 324
TfiI GAWTC 2 cut(s) 390, 405
TscAI CASTG 4 cut(s) 205, 230, 235, 390
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 371
TspRI CASTG 4 cut(s) 205, 230, 235, 390
VneI GTGCAC 2 cut(s) 226, 300
XapI RAATTY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.