Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

11509721 .. 11511977

Gene Structure 2257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAACAAACTCTCCAACGCTTTCTCTGTCCTGGCTTTCGCCGATGAAGATGCTCCAATGGCTTCTTCTTCTTCCACTGGGAAACAAGAAGAAAGTGTAAATGGGTCACTTGAGGATGGAGATTACAAGCAACCACTTGTTTGGATTGACTTGGAAATGACTGGATTAAATGTTGAAGTTGACAGGATATTGGAGATTGCATGTATAATTACTAATGGAGATTTAACACAATCAGTGGAGGGTCCAGATTTAGTTGTACGTCAAACGAAAGACTGTTTGGATAAAATGGATGACTGGTGTCAAACTCATCATGGAGCTAGTGGGTTGACGAAGAAAGTGCTCCTCAGTGCGATAACTGAAAGGGAAGCTGAGCAAAAGGTCATCGAATTCGTAAAGAAGCATGTTGGTTCCGGAAATCCACTGTTAGCTGGAAACTCAGTCTATGTCGATTTCCTTTTCTTAAAGAAATACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTCGTCGATGTCAGTAGCGTCAAGGCTTTATGCGCCCGATGGTTCCCCATAGAGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATATAAGAGAAAGTATAAAGGAGCTTAAGTACTACAAGAAAACAATATTCAAAGCTAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

222

Amino Acids

24.93

Weight (kDa)

6.53

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	47 - 210	3.1e-38	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	258, 635
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	2 cut(s)	176, 655
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	4 cut(s)	49, 81, 260, 292
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	7 cut(s)	317, 368, 428, 485, 569, 628, 659
AluI	AGCT	7 cut(s)	317, 368, 428, 485, 569, 628, 659
Alw21I	GWGCWC	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	2 cut(s)	110, 537
BcgI	CGANNNNNNTGC	4 cut(s)	32, 66, 319, 353
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	2 cut(s)	318, 660
BfrI	CTTAAG	1 cut(s)	629
BisI	GCNGC	1 cut(s)	486
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	487
BmcAI	AGTACT	1 cut(s)	635
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	3 cut(s)	243, 409, 548
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	87
BoxI	GACNNNNGTC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 617, 647
Bse1I	ACTGG	3 cut(s)	82, 166, 299
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	3 cut(s)	121, 295, 607
BseMII	CTCAG	3 cut(s)	358, 360, 450
BseNI	ACTGG	3 cut(s)	82, 166, 299
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp13I	TCCGGA	1 cut(s)	410
Bsp1720I	GCTNAGC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	597
BspCNI	CTCAG	3 cut(s)	357, 361, 449
BspEI	TCCGGA	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	243, 409, 548
BspTI	CTTAAG	1 cut(s)	629
BsrI	ACTGG	3 cut(s)	82, 166, 299
BssECI	CCNNGG	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	275, 423
BstAFI	CTTAAG	1 cut(s)	629
BstDEI	CTNAG	3 cut(s)	344, 369, 436
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	121, 295, 607
BstHHI	GCGC	1 cut(s)	539
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 536
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	3 cut(s)	204, 404, 475
BstPAI	GACNNNNGTC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	472
BstXI	CCANNNNNNTGG	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	121, 295, 607
BtsIMutI	CAGTG	4 cut(s)	75, 240, 352, 419
CfoI	GCGC	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	2 cut(s)	257, 634
CviAII	CATG	5 cut(s)	201, 311, 401, 472, 598
CviQI	GTAC	2 cut(s)	257, 634
DdeI	CTNAG	3 cut(s)	344, 369, 436
Eco130I	CCWWGG	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	5 cut(s)	204, 314, 404, 475, 601
FatI	CATG	5 cut(s)	200, 310, 400, 471, 597
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	3 cut(s)	128, 302, 614
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	318, 660
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	1 cut(s)	486
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	5 cut(s)	204, 314, 404, 475, 601
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	2 cut(s)	181, 327
HindII	GTYRAC	2 cut(s)	181, 327
HpaII	CCGG	1 cut(s)	411
Hpy166II	GTNNAC	2 cut(s)	181, 327
Hpy188III	TCNNGA	2 cut(s)	245, 411
Hpy8I	GTNNAC	2 cut(s)	181, 327
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	555
HpyCH4III	ACNGT	2 cut(s)	275, 423
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 536
HpyF3I	CTNAG	3 cut(s)	344, 369, 436
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	5 cut(s)	204, 314, 404, 475, 601
HspAI	GCGC	1 cut(s)	537
Kpn2I	TCCGGA	1 cut(s)	410
LmnI	GCTCC	5 cut(s)	58, 314, 345, 574, 625
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	318, 660
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	105
MboII	GAAGA	6 cut(s)	57, 59, 60, 63, 101, 343
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	3 cut(s)	207, 386, 479
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	106, 232, 353, 507
MroI	TCCGGA	1 cut(s)	410
MseI	TTAA	4 cut(s)	167, 224, 461, 630
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	59, 536
NcoI	CCATGG	1 cut(s)	597
NlaIII	CATG	5 cut(s)	204, 314, 404, 475, 601
NlaIV	GGNNCC	3 cut(s)	243, 409, 548
NmuCI	GTSAC	1 cut(s)	105
NspI	RCATGY	3 cut(s)	204, 404, 475
PkrI	GCNGC	1 cut(s)	487
PshAI	GACNNNNGTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	243, 409, 548
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	258, 635
RsaNI	GTAC	2 cut(s)	257, 634
SaqAI	TTAA	4 cut(s)	167, 224, 461, 630
SatI	GCNGC	1 cut(s)	486
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	635
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	9 cut(s)	262, 319, 370, 381, 430, 487, 571, 630, 661
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	110, 629
SmoI	CTYRAG	2 cut(s)	110, 629
Sse9I	AATT	3 cut(s)	207, 386, 479
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	2 cut(s)	318, 660
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	275, 423
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	3 cut(s)	384, 447, 510
TasI	AATT	3 cut(s)	207, 386, 479
TatI	WGTACW	1 cut(s)	633
Tru1I	TTAA	4 cut(s)	167, 224, 461, 630
Tru9I	TTAA	4 cut(s)	167, 224, 461, 630
TscAI	CASTG	4 cut(s)	82, 240, 352, 426
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	17, 60
TspRI	CASTG	4 cut(s)	82, 240, 352, 426
Vha464I	CTTAAG	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	3 cut(s)	204, 404, 475
XspI	CTAG	2 cut(s)	318, 660
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.