Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

4733258 .. 4738334

Gene Structure 5077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1051600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTAGAGAGTAAAGTTTCAGAACCAAACCAAGCAATCGTAACCAAAAGAGACAGAGAAACAATGGAGTTCCTCGCAAATGCATTCTCTGCGCTGGAACTTGACGCCGAAAACGACGATCCAATGCGATTCGCTTCTTCTTCTTCCGATGGCACTAGAAAATCTTCAGAAGAAAAAGTCAACGACTCTGACAACAAGTTGCTGGTAAATGAGAAGCAGAGTAAGAAAAATACAGAGGTACCTCCAGAAGAGTGCAAAATGCCACTGGTATGGATTGACTTGGAAATGACTGGTTTAAATGTTGAAGTTGATCGAATACTGGAGATTGCTTGTATAGTTACTGATGGAAGATTAACCAAATCGGTGGAGGGCCCTGATTTAGTTATCCACCAAACCAAGGAGTGTTTAGATAGAATGGGAGAATGGTGTCAAACACATCATGCAGCTAGTGGGTTGGCAACAAAAGTGCTCGAAAGTTCAATTAGTGAAAGAGAAGCTGAACAGCAGGTCATAGAATTTGTAAAGAGAAACATTGGAACATATCAACCTCTCATAGCAGGAAATTCGGTTTATGTAGATTTTGTGTTTTTGAAGAAGTACATGCCAGATCTGGCTAGCCTTTTCTCCCATGTACTAGTGGATGTTAGCAGTATTAAAGCTCTATGCATTCGCTGGTATCCTCAAGATAATAAGAAAGCCCCTTGTAAAGAAAATAAACACAGAGCCTTGGATGATATCAGAGAAAGCATCAAAGAACTCAAATACTACAAGGAGAATATATTCAAAGGATTCAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

267

Amino Acids

30.34

Weight (kDa)

5.45

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	90 - 253	4e-34	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	496
Acc65I	GGTACC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	515, 562
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	3 cut(s)	240, 599, 633
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	305, 480, 592, 784
AhlI	ACTAGT	1 cut(s)	634
AluBI	AGCT	3 cut(s)	446, 497, 659
AluI	AGCT	3 cut(s)	446, 497, 659
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	370
ApaI	GGGCCC	1 cut(s)	374
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	515, 562
Asp700I	GAANNNNTTC	2 cut(s)	163, 779
Asp718I	GGTACC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	370, 371
AsuNHI	GCTAGC	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	374
BaeI	ACNNNNGTAYC	2 cut(s)	222, 255
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	143, 338
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BciVI	GTATCC	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	634
BfaI	CTAG	5 cut(s)	5, 156, 447, 615, 635
BfuAI	ACCTGC	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	687
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	370, 371
BmiI	GGNNCC	2 cut(s)	240, 372
BmsI	GCATC	1 cut(s)	756
BmtI	GCTAGC	1 cut(s)	618
BpmI	CTGGAG	2 cut(s)	228, 341
BpuEI	CTTGAG	1 cut(s)	666
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	396, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse1I	ACTGG	3 cut(s)	270, 295, 324
BseDI	CCNNGG	2 cut(s)	396, 726
BseGI	GGATG	2 cut(s)	646, 736
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseNI	ACTGG	3 cut(s)	270, 295, 324
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	2 cut(s)	83, 666
BsnI	GGCC	1 cut(s)	372
Bsp120I	GGGCCC	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	374, 471
Bsp143I	GATC	3 cut(s)	118, 310, 607
BspANI	GGCC	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	240, 372
BspMI	ACCTGC	1 cut(s)	496
BspOI	GCTAGC	1 cut(s)	618
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	270, 295, 324
BssECI	CCNNGG	2 cut(s)	396, 726
BssMI	GATC	3 cut(s)	118, 310, 607
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	396, 726
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	616
BstF5I	GGATG	2 cut(s)	646, 736
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	3 cut(s)	121, 313, 610
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	3 cut(s)	118, 310, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	604
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	607
BstXI	CCANNNNNNTGG	2 cut(s)	270, 364
BstYI	RGATCY	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	646, 736
BtsIMutI	CAGTG	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	616
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	370, 371
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	239, 598, 632
CviAII	CATG	3 cut(s)	440, 601, 629
CviJI	RGCY	8 cut(s)	372, 446, 497, 614, 618, 659, 698, 725
CviKI_1	RGCY	8 cut(s)	372, 446, 497, 614, 618, 659, 698, 725
CviQI	GTAC	3 cut(s)	239, 598, 632
DpnI	GATC	3 cut(s)	120, 312, 609
DpnII	GATC	3 cut(s)	118, 310, 607
DraI	TTTAAA	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	396, 726
Eco24I	GRGCYC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	736
Eco57I	CTGAAG	1 cut(s)	150
EcoO109I	RGGNCCY	2 cut(s)	370, 371
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	2 cut(s)	396, 726
EcoT22I	ATGCAT	2 cut(s)	85, 668
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	2 cut(s)	396, 726
FaeI	CATG	3 cut(s)	443, 604, 632
FatI	CATG	3 cut(s)	439, 600, 628
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	653, 743
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	5 cut(s)	5, 156, 447, 615, 635
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	444
GsuI	CTGGAG	2 cut(s)	228, 341
HaeIII	GGCC	1 cut(s)	372
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	443, 604, 632
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	129, 185, 789
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	6 cut(s)	22, 148, 169, 190, 740, 794
Hpy188III	TCNNGA	2 cut(s)	245, 683
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4V	TGCA	4 cut(s)	83, 255, 443, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	443, 604, 632
HspAI	GCGC	1 cut(s)	92
KpnI	GGTACC	1 cut(s)	242
Kzo9I	GATC	3 cut(s)	118, 310, 607
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	756
MaeI	CTAG	5 cut(s)	5, 156, 447, 615, 635
MaeIII	GTNAC	2 cut(s)	40, 337
MalI	GATC	3 cut(s)	120, 312, 609
MboI	GATC	3 cut(s)	118, 310, 607
MboII	GAAGA	8 cut(s)	129, 132, 135, 156, 182, 260, 360, 604
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	2 cut(s)	374, 471
MluCI	AATT	3 cut(s)	480, 515, 562
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	6 cut(s)	83, 229, 252, 361, 558, 690
Mph1103I	ATGCAT	2 cut(s)	85, 668
MroXI	GAANNNNTTC	2 cut(s)	163, 779
MseI	TTAA	3 cut(s)	296, 353, 654
MslI	CAYNNNNRTG	1 cut(s)	268
Mva1269I	GAATGC	2 cut(s)	83, 666
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	118, 310, 607
NheI	GCTAGC	1 cut(s)	614
NlaIII	CATG	3 cut(s)	443, 604, 632
NlaIV	GGNNCC	2 cut(s)	240, 372
NsiI	ATGCAT	2 cut(s)	85, 668
NspI	RCATGY	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	2 cut(s)	83, 666
PdmI	GAANNNNTTC	2 cut(s)	163, 779
PfeI	GAWTC	2 cut(s)	129, 789
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	240, 372
PspOMI	GGGCCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	370, 371
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	3 cut(s)	240, 599, 633
RsaNI	GTAC	3 cut(s)	239, 598, 632
RseI	CAYNNNNRTG	1 cut(s)	268
SaqAI	TTAA	3 cut(s)	296, 353, 654
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	118, 310, 607
Sau96I	GGNCC	2 cut(s)	370, 371
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	374, 471
SetI	ASST	7 cut(s)	240, 244, 448, 499, 510, 550, 661
SfaNI	GCATC	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	681
SmoI	CTYRAG	1 cut(s)	681
SpeI	ACTAGT	1 cut(s)	634
Sse9I	AATT	3 cut(s)	480, 515, 562
SspMI	CTAG	5 cut(s)	5, 156, 447, 615, 635
StyI	CCWWGG	2 cut(s)	396, 726
TaqI	TCGA	2 cut(s)	313, 471
TasI	AATT	3 cut(s)	480, 515, 562
TatI	WGTACW	2 cut(s)	597, 631
TfiI	GAWTC	2 cut(s)	129, 789
Tru1I	TTAA	3 cut(s)	296, 353, 654
Tru9I	TTAA	3 cut(s)	296, 353, 654
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	443
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	2 cut(s)	515, 562
XceI	RCATGY	1 cut(s)	604
XmnI	GAANNNNTTC	2 cut(s)	163, 779
XspI	CTAG	5 cut(s)	5, 156, 447, 615, 635
Zsp2I	ATGCAT	2 cut(s)	85, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.