Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

49149747 .. 49158579

Gene Structure 8833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG353900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGATCAATTCTCTTTCACTTATATGGCGTATAGGTTTGAATGTTGAAGTTGATCGGATACTGGAGATTGCTTGCATAGTTACCGATGGCCGACTAACCAAATCCATAGAGGGCCCTGATCTGGTTATTCATCAAAGTAAGGAGTGTTTGGATAGGATGGGAGAATGGTGTCAAACTCATCATAAAGATAGTGGGTTGACGACTAAAGTGCTTCAAAGTACAATTAGTGAAGGAGAAGCTGAAAAGCAGATCATAGAATTTGTAAAGAGAAACATTGGAACATATACACCTCTTTTAGCAGGAAACTCAGTTTATGTGGACTTTGCATTTTTAAAGAAATACATGCCAGATTTGGCCAGCCTGTTCTCCCATGTAGTAGTTGATGTTAGCAGTGTTACAGCTCTATGCGTTCGCTGGTATCCTAGGGATAAAAAGAAAGCGCCTTCTAAAGAAAATAAACACAGAGCCCTGGATGACATCAGGGAAAGCATCAAGGAACTGAAATACTACAAACAGAATATATTCAAAGCAATTAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

181

Amino Acids

20.74

Weight (kDa)

8.97

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	12 - 168	2.3e-27	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	91, 357
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	43, 50, 218, 529
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	2 cut(s)	242, 404
AluI	AGCT	2 cut(s)	242, 404
AoxI	GGCC	3 cut(s)	91, 115, 357
ApaI	GGGCCC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	524
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	2 cut(s)	115, 116
AvrII	CCTAGG	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	119, 472
BccI	CCATC	2 cut(s)	83, 154
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	1 cut(s)	473
BciVI	GTATCC	2 cut(s)	54, 432
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	446
BfuI	GTATCC	2 cut(s)	54, 432
BlnI	CCTAGG	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	115, 116
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	425, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	2 cut(s)	425, 471
BseGI	GGATG	2 cut(s)	165, 481
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	119
BshFI	GGCC	3 cut(s)	93, 117, 359
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	3 cut(s)	93, 117, 359
Bsp120I	GGGCCC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	119, 472
Bsp143I	GATC	4 cut(s)	6, 55, 121, 252
BspANI	GGCC	3 cut(s)	93, 117, 359
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	425, 471
BssMI	GATC	4 cut(s)	6, 55, 121, 252
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	76, 361
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	165, 481
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	4 cut(s)	9, 58, 124, 255
BstMBI	GATC	4 cut(s)	6, 55, 121, 252
BstNI	CCWGG	1 cut(s)	473
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	119
BsuI	GTATCC	2 cut(s)	54, 432
BsuRI	GGCC	3 cut(s)	93, 117, 359
BtsCI	GGATG	2 cut(s)	165, 481
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	76, 361
CfoI	GCGC	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	115, 116
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	2 cut(s)	346, 374
CviJI	RGCY	7 cut(s)	93, 117, 242, 359, 363, 404, 470
CviKI_1	RGCY	7 cut(s)	93, 117, 242, 359, 363, 404, 470
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	4 cut(s)	8, 57, 123, 254
DpnII	GATC	4 cut(s)	6, 55, 121, 252
DraI	TTTAAA	1 cut(s)	336
EaeI	YGGCCR	2 cut(s)	91, 357
Eco130I	CCWWGG	1 cut(s)	425
Eco24I	GRGCYC	2 cut(s)	119, 472
EcoO109I	RGGNCCY	2 cut(s)	115, 116
EcoRII	CCWGG	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	425
EcoT38I	GRGCYC	2 cut(s)	119, 472
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	2 cut(s)	349, 377
FatI	CATG	2 cut(s)	345, 373
FokI	GGATG	2 cut(s)	172, 488
FriOI	GRGCYC	2 cut(s)	119, 472
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	3 cut(s)	93, 117, 359
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	2 cut(s)	349, 377
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	201, 322
Hpy188I	TCNGA	1 cut(s)	60
Hpy8I	GTNNAC	2 cut(s)	201, 322
HpyAV	CCTTC	2 cut(s)	227, 456
HpyCH4V	TGCA	2 cut(s)	78, 329
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	349, 377
HspAI	GCGC	1 cut(s)	443
Kzo9I	GATC	4 cut(s)	6, 55, 121, 252
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	82, 397
MalI	GATC	4 cut(s)	8, 57, 123, 254
MboI	GATC	4 cut(s)	6, 55, 121, 252
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	119, 472
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	4 cut(s)	10, 225, 260, 534
MluNI	TGGCCA	1 cut(s)	359
MnlI	CCTC	2 cut(s)	106, 303
Mox20I	TGGCCA	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	25
Msp20I	TGGCCA	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	473
NdeII	GATC	4 cut(s)	6, 55, 121, 252
NlaIII	CATG	2 cut(s)	349, 377
NlaIV	GGNNCC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	117
PspOMI	GGGCCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	115, 116
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	335
Sau3AI	GATC	4 cut(s)	6, 55, 121, 252
Sau96I	GGNCC	2 cut(s)	115, 116
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	119, 472
SetI	ASST	4 cut(s)	40, 244, 295, 406
SfaNI	GCATC	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	4 cut(s)	10, 225, 260, 534
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	425
TasI	AATT	4 cut(s)	10, 225, 260, 534
TatI	WGTACW	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	17, 122
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	349
XmaJI	CCTAGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.