Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Forward (+)

20667193 .. 20676878

Gene Structure 9686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27591.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGCGTCTGGCAAACGCGTTCTCTGTGCTCAACCTTGACGTCGAAGACGACGACGATGAAATAGGAGGGGCGTCTTCTACTTCCAAGCCCGTACAGGACACTTCAGCAGGCAAGAGGAACAAGGAAGCCAACAACATGTTGCTGCCAAATGAAGAGTACAGGCTGCCCCTTGTATGGATTGACTTGGAAATGACCGGTTTGAATGTTGAAGTTGATCGGATACTGGAGATTGCTTGCATTATTACTGATGGCAAACTAACCAAATCCATAGAGGGCCCTGATCTGGTTATTCATCAACGTAAGGAGTGTTTGGATAGGATGGGAGAGTGGTGTCAAATTCATCATAAAGATAGTGGGTTGACAGATAAAGTGCTCCAAAGTACAATCAGTGAAGGAGAAGCTGAAAAGCAGATCATAGAATTTGTAAAGAGAAACATTGGAACGTATAAACCTCTTTTAGCAGGAAACTCAGTTTATGTGGACTTCGTATTTTTGAAGAAATACATGCCAGATTTGGCCAGCCTGTTCTCCCATGTAGTAGTTGATGTTAGCAGTGTTAAAGCTCTATGCATTCGCTGGTATCCTAAAGATAATAAGAAAGCACCTTCTAAAGAAAATAAACACAGAGCCCTGGATGACATCAGGGAAAGCATCATGGAACTGAAATACTACAAGCAGAATATTTTCAAAGCAAGTAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

236

Amino Acids

26.76

Weight (kDa)

5.82

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	59 - 220	5.6e-33	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	339, 422
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	2 cut(s)	42, 74
AfaI	GTAC	3 cut(s)	96, 161, 385
AfiI	CCNNNNNNNGG	2 cut(s)	177, 286
AflIII	ACRYGT	2 cut(s)	18, 138
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	205, 212, 499, 691
AjnI	CCWGG	1 cut(s)	633
AluBI	AGCT	2 cut(s)	404, 566
AluI	AGCT	2 cut(s)	404, 566
Alw21I	GWGCWC	2 cut(s)	33, 378
AoxI	GGCC	2 cut(s)	277, 519
ApaI	GGGCCC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	145, 166
ApoI	RAATTY	2 cut(s)	339, 422
AsiGI	ACCGGT	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	686
AspS9I	GGNCC	2 cut(s)	277, 278
BaeGI	GKGCMC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	521
BanII	GRGCYC	2 cut(s)	281, 634
BbsI	GAAGAC	2 cut(s)	54, 69
Bbv12I	GWGCWC	2 cut(s)	33, 378
BbvI	GCAGC	2 cut(s)	132, 153
BccI	CCATC	2 cut(s)	245, 316
BciT130I	CCWGG	1 cut(s)	635
BciVI	GTATCC	2 cut(s)	216, 594
BfuI	GTATCC	2 cut(s)	216, 594
BisI	GCNGC	2 cut(s)	146, 167
BlsI	GCNGC	2 cut(s)	147, 168
Bme1390I	CCNGG	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	277, 278
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	635
BmsI	GCATC	1 cut(s)	663
BpiI	GAAGAC	2 cut(s)	54, 69
BpmI	CTGGAG	1 cut(s)	248
BsaHI	GRCGYC	2 cut(s)	42, 74
BsaJI	CCNNGG	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 286
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	2 cut(s)	327, 643
BseLI	CCNNNNNNNGG	2 cut(s)	177, 286
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	132, 153
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	279, 521
BshTI	ACCGGT	1 cut(s)	197
BsiHKAI	GWGCWC	2 cut(s)	33, 378
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	177, 286
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	279, 521
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	4 cut(s)	33, 281, 378, 634
Bsp143I	GATC	3 cut(s)	217, 283, 414
BspANI	GGCC	2 cut(s)	279, 521
BspCNI	CTCAG	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	3 cut(s)	217, 283, 414
BssNI	GRCGYC	2 cut(s)	42, 74
Bst2UI	CCWGG	1 cut(s)	635
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	42, 74
BstC8I	GCNNGC	3 cut(s)	112, 238, 523
BstDEI	CTNAG	1 cut(s)	472
BstF5I	GGATG	2 cut(s)	327, 643
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	220, 286, 417
BstMBI	GATC	3 cut(s)	217, 283, 414
BstNI	CCWGG	1 cut(s)	635
BstNSI	RCATGY	2 cut(s)	142, 511
BstSCI	CCNGG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	132, 153
BstV2I	GAAGAC	2 cut(s)	54, 69
BsuI	GTATCC	2 cut(s)	216, 594
BsuRI	GGCC	2 cut(s)	279, 521
BtsCI	GGATG	2 cut(s)	327, 643
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	397, 562
Cac8I	GCNNGC	3 cut(s)	112, 238, 523
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	277, 278
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	95, 160, 384
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	4 cut(s)	139, 508, 536, 658
CviJI	RGCY	9 cut(s)	91, 131, 166, 279, 404, 521, 525, 566, 632
CviKI_1	RGCY	9 cut(s)	91, 131, 166, 279, 404, 521, 525, 566, 632
CviQI	GTAC	3 cut(s)	95, 160, 384
DdeI	CTNAG	1 cut(s)	472
DpnI	GATC	3 cut(s)	219, 285, 416
DpnII	GATC	3 cut(s)	217, 283, 414
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco24I	GRGCYC	2 cut(s)	281, 634
Eco57I	CTGAAG	1 cut(s)	90
EcoO109I	RGGNCCY	2 cut(s)	277, 278
EcoRII	CCWGG	1 cut(s)	633
EcoT22I	ATGCAT	1 cut(s)	575
EcoT38I	GRGCYC	2 cut(s)	281, 634
FaeI	CATG	4 cut(s)	142, 511, 539, 661
FatI	CATG	4 cut(s)	138, 507, 535, 657
Fnu4HI	GCNGC	2 cut(s)	146, 167
FokI	GGATG	2 cut(s)	334, 650
FriOI	GRGCYC	2 cut(s)	281, 634
Fsp4HI	GCNGC	2 cut(s)	146, 167
GluI	GCNGC	2 cut(s)	146, 167
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	279, 521
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	2 cut(s)	42, 74
Hin1II	CATG	4 cut(s)	142, 511, 539, 661
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	2 cut(s)	363, 484
Hpy188I	TCNGA	1 cut(s)	222
Hpy8I	GTNNAC	2 cut(s)	363, 484
Hpy99I	CGWCG	3 cut(s)	47, 56, 59
HpyAV	CCTTC	2 cut(s)	389, 618
HpyCH4IV	ACGT	3 cut(s)	42, 301, 446
HpyCH4V	TGCA	2 cut(s)	240, 573
HpyF3I	CTNAG	1 cut(s)	472
HpySE526I	ACGT	3 cut(s)	42, 301, 446
Hsp92I	GRCGYC	2 cut(s)	42, 74
Hsp92II	CATG	4 cut(s)	142, 511, 539, 661
Kzo9I	GATC	3 cut(s)	217, 283, 414
LmnI	GCTCC	2 cut(s)	4, 381
Lsp1109I	GCAGC	2 cut(s)	132, 153
LweI	GCATC	1 cut(s)	663
MaeII	ACGT	3 cut(s)	42, 301, 446
MalI	GATC	3 cut(s)	219, 285, 416
MboI	GATC	3 cut(s)	217, 283, 414
MboII	GAAGA	4 cut(s)	59, 69, 167, 511
MhlI	GDGCHC	4 cut(s)	33, 281, 378, 634
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	2 cut(s)	339, 422
MluI	ACGCGT	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	521
MnlI	CCTC	4 cut(s)	62, 111, 268, 465
Mox20I	TGGCCA	1 cut(s)	521
Mph1103I	ATGCAT	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	521
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	635
MvnI	CGCG	1 cut(s)	20
NdeII	GATC	3 cut(s)	217, 283, 414
NlaIII	CATG	4 cut(s)	142, 511, 539, 661
NlaIV	GGNNCC	1 cut(s)	279
NsiI	ATGCAT	1 cut(s)	575
NspI	RCATGY	2 cut(s)	142, 511
PciI	ACATGT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 51
PctI	GAATGC	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	686
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	147, 168
PscI	ACATGT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	279
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	277, 278
RsaI	GTAC	3 cut(s)	96, 161, 385
RsaNI	GTAC	3 cut(s)	95, 160, 384
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	2 cut(s)	146, 167
Sau3AI	GATC	3 cut(s)	217, 283, 414
Sau96I	GGNCC	2 cut(s)	277, 278
ScrFI	CCNGG	1 cut(s)	635
SduI	GDGCHC	4 cut(s)	33, 281, 378, 634
SetI	ASST	8 cut(s)	39, 45, 304, 406, 449, 457, 568, 610
SfaNI	GCATC	1 cut(s)	663
Sse9I	AATT	2 cut(s)	339, 422
SspI	AATATT	1 cut(s)	685
StyD4I	CCNGG	1 cut(s)	633
TaiI	ACGT	3 cut(s)	45, 304, 449
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	339, 422
TatI	WGTACW	2 cut(s)	159, 383
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	2 cut(s)	397, 562
TseI	GCWGC	2 cut(s)	145, 166
TspDTI	ATGAA	4 cut(s)	75, 168, 284, 332
TspRI	CASTG	2 cut(s)	397, 562
XapI	RAATTY	2 cut(s)	339, 422
XceI	RCATGY	2 cut(s)	142, 511
XmnI	GAANNNNTTC	1 cut(s)	686
ZraI	GACGTC	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.