Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

28238423 .. 28240211

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAATAAATTTAGTTGTAATTTAAAGTTTTTGATTTTTTTTTCAATTTTATTATTTCCTATGCAGAACAGCTTTGATCTTCCACATGACTACTTTGCGCTGCTTCCGAAATATCTCCGTCTCGATCAGACGATGAGAGTTCCAGAAACTCCAGCCCTTCGCCGCTGTCTCTCCCTTTGTTGTCGTCAGCTCATTCGCAACCATGGCAATAGCAAGAAAAAAGTCAACGACTCTGATAACATGTCGCTGGTAAATGAGAAGCTTAGTAAGCAAATTACAGATATACCTCCAGAAGAGTACAAAATGCCACAGTTTTGGGGAAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

110

Amino Acids

12.86

Weight (kDa)

9.33

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	45
AluBI	AGCT	3 cut(s)	72, 190, 262
AluI	AGCT	3 cut(s)	72, 190, 262
Alw26I	GTCTC	2 cut(s)	125, 173
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	125, 173
BisI	GCNGC	2 cut(s)	101, 163
BlsI	GCNGC	2 cut(s)	102, 164
BpmI	CTGGAG	2 cut(s)	135, 273
BsaJI	CCNNGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	125, 173
BsmBI	CGTCTC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	76, 124
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	76, 124
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	79, 127
BstMAI	GTCTC	2 cut(s)	125, 173
BstMBI	GATC	2 cut(s)	76, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 268
BstNSI	RCATGY	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	202
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	3 cut(s)	86, 203, 241
CviJI	RGCY	4 cut(s)	72, 155, 190, 262
CviKI_1	RGCY	4 cut(s)	72, 155, 190, 262
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	2 cut(s)	78, 126
DpnII	GATC	2 cut(s)	76, 124
DraI	TTTAAA	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	3 cut(s)	89, 206, 244
FaiI	YATR	6 cut(s)	62, 87, 204, 242, 284, 328
FatI	CATG	3 cut(s)	85, 202, 240
Fnu4HI	GCNGC	2 cut(s)	101, 163
Fsp4HI	GCNGC	2 cut(s)	101, 163
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	101, 163
GsuI	CTGGAG	2 cut(s)	135, 273
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	89, 206, 244
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	108, 129, 235
Hpy188III	TCNNGA	3 cut(s)	122, 143, 290
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 268
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	3 cut(s)	89, 206, 244
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	76, 124
LpnPI	CCDG	4 cut(s)	156, 165, 233, 303
Lsp1109I	GCAGC	1 cut(s)	87
MalI	GATC	2 cut(s)	78, 126
MboI	GATC	2 cut(s)	76, 124
MboII	GAAGA	2 cut(s)	71, 305
MluCI	AATT	4 cut(s)	8, 19, 45, 273
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	204, 268
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	76, 124
NlaIII	CATG	3 cut(s)	89, 206, 244
NspI	RCATGY	1 cut(s)	244
PciI	ACATGT	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	102, 164
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PscI	ACATGT	1 cut(s)	240
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	101, 163
Sau3AI	GATC	2 cut(s)	76, 124
SchI	GAGTC	1 cut(s)	224
SetI	ASST	4 cut(s)	74, 192, 264, 289
SgeI	CNNG	9 cut(s)	98, 134, 155, 164, 215, 226, 253, 260, 302
Sse9I	AATT	4 cut(s)	8, 19, 45, 273
SsiI	CCGC	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	8, 19, 45, 273
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	107
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.