Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

50677054 .. 50692609

Gene Structure 15556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG330400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGCATCTCGCAAATGCGTTCTCTGCGCTCAACGTCGACGTTGAAGACGACGATGAAATACGAGGGGCGCCTTCTACTTCCAAGGCCACAGAGGACACTTCAGGCAAGAGGGACAAAGCCAACAACTCTGATAACGTCGTGATGGCAAATGAGAAACTGTGTGAAGAGTACAAGATGCCCCTTGTATGGATTGACTTGGAAATGACTGGTTTGAATGTTGAAGTTGATCGCATACTGGAGATTGCTTGCATAGTTACCGATGGCAAACTAACCAAATCCATAGAGGGCCCTGATCTGGTTATTCATCAAAGTAAGGAGTGTTTGGATAGGATGGGAGAATGGTGTCAAACTCATCATAAAGATAGTGGGTTGACGACTAAAGTGCTTCAAAGTACAATTAGTGAAGGAGAAGCTGAAAAGCAGATCATAGAATTTGTAAAGAGAAACATTGGAACATATACACCTCTTTTAGCAGGAAACTCAATTTATGTGGACTTTGCATTTTTAAAGGTAAGGCAGCTGACTTCTCCTGATTTCACTTTCAGTATTTTGATTATGAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

189

Amino Acids

21.13

Weight (kDa)

4.72

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	63 - 173	3.5e-21	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	2 cut(s)	173, 397
AfiI	CCNNNNNNNGG	2 cut(s)	189, 298
AgsI	TTSAA	4 cut(s)	47, 217, 224, 392
AluBI	AGCT	2 cut(s)	416, 523
AluI	AGCT	2 cut(s)	416, 523
AoxI	GGCC	2 cut(s)	87, 289
ApaI	GGGCCC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	31, 73
AspS9I	GGNCC	2 cut(s)	289, 290
BaeGI	GKGCMC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	3 cut(s)	139, 257, 328
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BfaI	CTAG	1 cut(s)	568
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	289, 290
BmiI	GGNNCC	2 cut(s)	72, 291
BmsI	GCATC	2 cut(s)	16, 168
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 298
Bse1I	ACTGG	2 cut(s)	214, 243
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	189, 298
BseNI	ACTGG	2 cut(s)	214, 243
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	532
BshFI	GGCC	2 cut(s)	89, 291
BshNI	GGYRCC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	189, 298
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	89, 291
Bsp120I	GGGCCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	229, 295, 426
BspANI	GGCC	2 cut(s)	89, 291
BspLI	GGNNCC	2 cut(s)	72, 291
BspT107I	GGYRCC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	214, 243
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	229, 295, 426
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	31, 73
BstKTI	GATC	3 cut(s)	232, 298, 429
BstMBI	GATC	3 cut(s)	229, 295, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	89, 291
BtsCI	GGATG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	250
CfoI	GCGC	2 cut(s)	31, 73
Cfr13I	GGNCC	2 cut(s)	289, 290
Csp6I	GTAC	2 cut(s)	172, 396
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviJI	RGCY	5 cut(s)	89, 122, 291, 416, 523
CviKI_1	RGCY	5 cut(s)	89, 122, 291, 416, 523
CviQI	GTAC	2 cut(s)	172, 396
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	3 cut(s)	231, 297, 428
DpnII	GATC	3 cut(s)	229, 295, 426
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	87
EcoO109I	RGGNCCY	2 cut(s)	289, 290
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	293
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	84
FaqI	GGGAC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	521
FokI	GGATG	1 cut(s)	346
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	568
GlaI	GCGC	2 cut(s)	30, 72
GluI	GCNGC	1 cut(s)	521
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	89, 291
HhaI	GCGC	2 cut(s)	31, 73
Hin1I	GRCGYC	1 cut(s)	71
Hin6I	GCGC	2 cut(s)	29, 71
HinP1I	GCGC	2 cut(s)	29, 71
HincII	GTYRAC	2 cut(s)	40, 375
HindII	GTYRAC	2 cut(s)	40, 375
Hpy166II	GTNNAC	3 cut(s)	40, 375, 496
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	142, 533
Hpy8I	GTNNAC	3 cut(s)	40, 375, 496
Hpy99I	CGWCG	4 cut(s)	41, 44, 56, 143
HpyAV	CCTTC	2 cut(s)	84, 401
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	3 cut(s)	36, 42, 138
HpyCH4V	TGCA	2 cut(s)	252, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpySE526I	ACGT	3 cut(s)	36, 42, 138
Hsp92I	GRCGYC	1 cut(s)	71
HspAI	GCGC	2 cut(s)	29, 71
KasI	GGCGCC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	229, 295, 426
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	90, 195, 224, 284, 306, 462, 546
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	2 cut(s)	16, 168
MaeI	CTAG	1 cut(s)	568
MaeII	ACGT	3 cut(s)	36, 42, 138
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	231, 297, 428
MboI	GATC	3 cut(s)	229, 295, 426
MboII	GAAGA	2 cut(s)	59, 179
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	3 cut(s)	399, 434, 486
Mly113I	GGCGCC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	59, 88, 105, 280, 477
MseI	TTAA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	523
MwoI	GCNNNNNNNGC	1 cut(s)	26
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	3 cut(s)	229, 295, 426
NlaIV	GGNNCC	2 cut(s)	72, 291
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	522
PluTI	GGCGCC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	72, 291
PspOMI	GGGCCC	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	289, 290
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	2 cut(s)	173, 397
RsaNI	GTAC	2 cut(s)	172, 396
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	3 cut(s)	229, 295, 426
Sau96I	GGNCC	2 cut(s)	289, 290
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	7 cut(s)	39, 45, 141, 418, 469, 516, 525
SfaNI	GCATC	2 cut(s)	16, 168
SfoI	GGCGCC	1 cut(s)	72
SgrDI	CGTCGACG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	399, 434, 486
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	3 cut(s)	39, 45, 141
TaqI	TCGA	1 cut(s)	39
TasI	AATT	3 cut(s)	399, 434, 486
TatI	WGTACW	2 cut(s)	171, 395
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TseI	GCWGC	1 cut(s)	520
TspDTI	ATGAA	2 cut(s)	72, 296
XapI	RAATTY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.