Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Forward (+)

32269272 .. 32276859

Gene Structure 7588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1268200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGTGCCTCGCAAATGCATTCTCTGTGCTGGAGCTCGACGCCGATGACGACCATCCAATGCGATTCGCAACTTCTGCTTCCAATGACACTCCAAAATCTTCAGGCAGCGATAAGAAAGTCATCAACTCTGATAAAATGTTGCTCGTAAACGAGAAGCAGAGTCAACAAAGTACAGAGATGCTTCCAGAAGAATACAAGAGGCCCCTGATATGGATTGACTTGGAAATGACTGGTTTAAATGTTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATCACTGATGGAAAATTAACCAAGTCAGTGGAGGGCCCAGATTTAGTTATCCATCAAACTAAGGAGTGTTTAGATAGAATGGGAGAATGGTGTCAAACTCATCATGCAGCTAGTGGGTTGACGACAAAAGTGCTCGAAAGTTCGATTAGTGAAAAAGAAGCTGAACAGCAGGTCATAGAATTTGTAAAGAGAAACATTGGAACATATCAACCTGTCTTAGCAGGAAATTCAGTTTATGTGGATTTTCTGTTTTTGAAGAAGTACATGCCGGATTTGGCTAGCCTTTTCTCCCATGTATTAGTGGATGTTAGCAGTATTAAAGCTCTATGCATTCGCTGGTATCCTAGAGATAATCAGAAAGCCCCTTCCAAAGAAAATAAACACAGAGCCTTGGACGATATCAGAGAAAGCATCAGAGAACTCAAATACTACAAGGACAATATATTCAAAGCATTTAGAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

249

Amino Acids

28.33

Weight (kDa)

5.76

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	71 - 233	2.1e-33	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	458, 505
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	175, 542
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	3 cut(s)	248, 535, 727
AluBI	AGCT	4 cut(s)	37, 389, 440, 602
AluI	AGCT	4 cut(s)	37, 389, 440, 602
Alw21I	GWGCWC	2 cut(s)	39, 414
AoxI	GGCC	2 cut(s)	203, 313
ApaI	GGGCCC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	108, 386
ApoI	RAATTY	2 cut(s)	458, 505
AspS9I	GGNCC	3 cut(s)	204, 313, 314
AsuNHI	GCTAGC	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	39, 317
Bbv12I	GWGCWC	2 cut(s)	39, 414
BbvI	GCAGC	2 cut(s)	120, 398
BccI	CCATC	3 cut(s)	63, 281, 339
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciVI	GTATCC	1 cut(s)	630
BfaI	CTAG	3 cut(s)	390, 558, 624
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	2 cut(s)	109, 387
BlsI	GCNGC	2 cut(s)	110, 388
BmgT120I	GGNCC	3 cut(s)	204, 313, 314
BmiI	GGNNCC	2 cut(s)	206, 315
BmsI	GCATC	2 cut(s)	171, 699
BmtI	GCTAGC	1 cut(s)	561
BpmI	CTGGAG	2 cut(s)	53, 284
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	2 cut(s)	238, 267
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	2 cut(s)	55, 589
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	238, 267
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	120, 398
BshFI	GGCC	2 cut(s)	205, 315
BsiHKAI	GWGCWC	2 cut(s)	39, 414
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmI	GAATGC	2 cut(s)	20, 609
BsnI	GGCC	2 cut(s)	205, 315
Bsp120I	GGGCCC	1 cut(s)	313
Bsp1286I	GDGCHC	3 cut(s)	39, 317, 414
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	2 cut(s)	205, 315
BspLI	GGNNCC	2 cut(s)	206, 315
BspMI	ACCTGC	1 cut(s)	439
BspOI	GCTAGC	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	238, 267
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	669
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	2 cut(s)	339, 496
BstF5I	GGATG	2 cut(s)	55, 589
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	547
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	120, 398
BstXI	CCANNNNNNTGG	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	205, 315
BtsCI	GGATG	2 cut(s)	55, 589
BtsIMutI	CAGTG	2 cut(s)	282, 312
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	559
Cfr13I	GGNCC	3 cut(s)	204, 313, 314
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	174, 541
CviAII	CATG	3 cut(s)	383, 544, 572
CviQI	GTAC	2 cut(s)	174, 541
DdeI	CTNAG	2 cut(s)	339, 496
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
DraI	TTTAAA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	669
Eco24I	GRGCYC	2 cut(s)	39, 317
Eco32I	GATATC	1 cut(s)	679
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	2 cut(s)	204, 313
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	669
EcoT22I	ATGCAT	2 cut(s)	22, 611
EcoT38I	GRGCYC	2 cut(s)	39, 317
ErhI	CCWWGG	1 cut(s)	669
FaeI	CATG	3 cut(s)	386, 547, 575
FatI	CATG	3 cut(s)	382, 543, 571
Fnu4HI	GCNGC	2 cut(s)	109, 387
FokI	GGATG	2 cut(s)	42, 596
FriOI	GRGCYC	2 cut(s)	39, 317
Fsp4HI	GCNGC	2 cut(s)	109, 387
FspBI	CTAG	3 cut(s)	390, 558, 624
GluI	GCNGC	2 cut(s)	109, 387
GsuI	CTGGAG	2 cut(s)	53, 284
HaeIII	GGCC	2 cut(s)	205, 315
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	386, 547, 575
HincII	GTYRAC	2 cut(s)	167, 399
HindII	GTYRAC	2 cut(s)	167, 399
HinfI	GANTC	2 cut(s)	66, 163
HpaII	CCGG	1 cut(s)	548
Hpy166II	GTNNAC	3 cut(s)	151, 167, 399
Hpy188I	TCNGA	4 cut(s)	133, 636, 683, 695
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	3 cut(s)	151, 167, 399
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	654
HpyCH4V	TGCA	3 cut(s)	20, 386, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	339, 496
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	386, 547, 575
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	2 cut(s)	120, 398
LweI	GCATC	2 cut(s)	171, 699
MaeI	CTAG	3 cut(s)	390, 558, 624
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	93, 203, 547
MhlI	GDGCHC	3 cut(s)	39, 317, 414
MluCI	AATT	3 cut(s)	293, 458, 505
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	20, 195, 304
Mph1103I	ATGCAT	2 cut(s)	22, 611
MseI	TTAA	3 cut(s)	239, 296, 597
MspI	CCGG	1 cut(s)	548
Mva1269I	GAATGC	2 cut(s)	20, 609
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	253
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	3 cut(s)	386, 547, 575
NlaIV	GGNNCC	2 cut(s)	206, 315
NsiI	ATGCAT	2 cut(s)	22, 611
NspI	RCATGY	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	2 cut(s)	20, 609
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	110, 388
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	206, 315
PspOMI	GGGCCC	1 cut(s)	313
PspPI	GGNCC	3 cut(s)	204, 313, 314
RsaI	GTAC	2 cut(s)	175, 542
RsaNI	GTAC	2 cut(s)	174, 541
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	239, 296, 597
SatI	GCNGC	2 cut(s)	109, 387
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	3 cut(s)	204, 313, 314
SchI	GAGTC	1 cut(s)	172
SduI	GDGCHC	3 cut(s)	39, 317, 414
SetI	ASST	6 cut(s)	39, 391, 442, 453, 493, 604
SfaNI	GCATC	2 cut(s)	171, 699
Sse9I	AATT	3 cut(s)	293, 458, 505
SspMI	CTAG	3 cut(s)	390, 558, 624
SstI	GAGCTC	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	669
TaqI	TCGA	4 cut(s)	39, 256, 414, 422
TasI	AATT	3 cut(s)	293, 458, 505
TatI	WGTACW	2 cut(s)	173, 540
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	239, 296, 597
Tru9I	TTAA	3 cut(s)	239, 296, 597
TscAI	CASTG	2 cut(s)	289, 312
TseI	GCWGC	2 cut(s)	108, 386
TspRI	CASTG	2 cut(s)	289, 312
XapI	RAATTY	2 cut(s)	458, 505
XceI	RCATGY	1 cut(s)	547
XspI	CTAG	3 cut(s)	390, 558, 624
Zsp2I	ATGCAT	2 cut(s)	22, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.