pycom08g10140

Oligoribonuclease-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
8450988 .. 8452148
1161 bp
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UTR
Exon/CDS
Intron
pycom08g10140.1

Sequence Viewer

Length: 324 bp
ATGCAGAACATCTTTGATCTTCCATATGACTGCTTTGCGCTGCTTCCGAAATATCTCTGTCTCGACTCTCGATGCAATAACAAGAAAAAAGTCAATGACTCTGATAACATGTCGCTGGTAAATGAGAAGCAGAGTAAGCAAATTACAGAGATACCTCCAGAAGAGTGCAAAATGCCACTGGTATGGATTGACTTGGAAATGACTGGTGAGGGTAATATTGCTCAAGTATATATGAAAAGGTATGGCGAAATAACATTGATAATTTCTTCGCTACTCTTGGGAACTAATTTTGTGTGGAATTTTGTTGTATGGACTATGGAGTAA

Protein Analysis

108

Amino Acids

12.46

Weight (kDa)

4.78

Isoelectric Point (pI)

66.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 218
BbvI GCAGC 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 65
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmsI GCATC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 183, 208
BseNI ACTGG 2 cut(s) 183, 208
BseXI GCAGC 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 16
BsrI ACTGG 2 cut(s) 183, 208
BssMI GATC 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 156
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 27
BstXI CCANNNNNNTGG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 176
CfoI GCGC 1 cut(s) 40
CviAII CATG 1 cut(s) 109
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
FaeI CATG 1 cut(s) 112
FatI CATG 1 cut(s) 108
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
GlaI GCGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 141
HhaI GCGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 2 cut(s) 65, 98
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 48, 103
Hpy188III TCNNGA 3 cut(s) 62, 69, 158
HpyCH4V TGCA 3 cut(s) 4, 75, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 101, 164, 171, 189
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 62
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 11, 173, 258
MluCI AATT 4 cut(s) 141, 261, 286, 298
MlyI GAGTC 2 cut(s) 59, 92
MnlI CCTC 2 cut(s) 165, 202
MslI CAYNNNNRTG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 112
NspI RCATGY 1 cut(s) 112
PciI ACATGT 1 cut(s) 108
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 2 cut(s) 59, 92
PpsI GAGTC 2 cut(s) 59, 92
PscI ACATGT 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 181
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 2 cut(s) 59, 92
SetI ASST 2 cut(s) 157, 242
SfaNI GCATC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 4 cut(s) 141, 261, 286, 298
SspI AATATT 1 cut(s) 217
TaqI TCGA 2 cut(s) 63, 70
TasI AATT 4 cut(s) 141, 261, 286, 298
TscAI CASTG 1 cut(s) 183
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 1 cut(s) 183
XapI RAATTY 1 cut(s) 298
XceI RCATGY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.