Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

50848029 .. 50856661

Gene Structure 8633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAAATGAGAAACTGTGTGAAGAGTACAAGATGCCCCTTGTATGGATTGACTTGGAAATGACTGGTTTGAATGTTGAAGTTGATCGCATACTGGAGATTGCTTGCATAGTTACCGATGGCAAACTAACCAAATCCATAGAGGGCCCTGATCTGGTTATTCATCAAAGTGAGGAGTGTTTGGATAGGATGGGAGAATGGTGTCAAACTCATCATAAAGATAGTGGGTTGACGACTAAAGTGCTTCAAAGTACAATTAGTGAAGGAGAAGCTGAGAAGCAGATCATAGAATTTGTAAAGAGAAACATTGGAACATATACACCTCTTTTAGCAGGAAACTCAGTTTATGTGGACTTTGCATTTTTAAAGAAATACATGCCAGATTTGGCCAGCCTGTTCTCCCATGTAGTAGTTGATGTTAGCAGTGTTACAGCTCTATGCATTCGCTGGTATCCTAGAGATAAAAAGAAAGCGCCTTCTAAAGAAAATAAACACAGAGCCCTGGATGACATAAGGGAAAGCATCAAGGAACTGAAATACTACAAACAGAATATATTCAAAGCAATTAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

191

Amino Acids

21.94

Weight (kDa)

6.23

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	15 - 178	1.7e-33	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	2 cut(s)	29, 253
AfiI	CCNNNNNNNGG	2 cut(s)	45, 154
AgsI	TTSAA	4 cut(s)	73, 80, 248, 559
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	272, 434
AluI	AGCT	2 cut(s)	272, 434
AoxI	GGCC	2 cut(s)	145, 387
ApaI	GGGCCC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	145, 146
BaeGI	GKGCMC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	149, 502
BccI	CCATC	2 cut(s)	113, 184
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	503
BmgT120I	GGNCC	2 cut(s)	145, 146
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	24, 531
BpmI	CTGGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 154
Bse1I	ACTGG	2 cut(s)	70, 99
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	195, 511
BseLI	CCNNNNNNNGG	2 cut(s)	45, 154
BseMII	CTCAG	2 cut(s)	264, 354
BseNI	ACTGG	2 cut(s)	70, 99
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	147, 389
BslI	CCNNNNNNNGG	2 cut(s)	45, 154
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	147, 389
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	149, 502
Bsp143I	GATC	3 cut(s)	85, 151, 282
BspANI	GGCC	2 cut(s)	147, 389
BspCNI	CTCAG	2 cut(s)	265, 353
BspLI	GGNNCC	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	70, 99
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	3 cut(s)	85, 151, 282
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	106, 391
BstDEI	CTNAG	2 cut(s)	273, 340
BstF5I	GGATG	2 cut(s)	195, 511
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	3 cut(s)	88, 154, 285
BstMBI	GATC	3 cut(s)	85, 151, 282
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	501
BstSLI	GKGCMC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	147, 389
BtsCI	GGATG	2 cut(s)	195, 511
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	106, 391
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	145, 146
Csp6I	GTAC	2 cut(s)	28, 252
CviAII	CATG	2 cut(s)	376, 404
CviJI	RGCY	6 cut(s)	147, 272, 389, 393, 434, 500
CviKI_1	RGCY	6 cut(s)	147, 272, 389, 393, 434, 500
CviQI	GTAC	2 cut(s)	28, 252
DdeI	CTNAG	2 cut(s)	273, 340
DpnI	GATC	3 cut(s)	87, 153, 284
DpnII	GATC	3 cut(s)	85, 151, 282
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	149, 502
EcoO109I	RGGNCCY	2 cut(s)	145, 146
EcoRII	CCWGG	1 cut(s)	501
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	2 cut(s)	149, 502
FaeI	CATG	2 cut(s)	379, 407
FatI	CATG	2 cut(s)	375, 403
FokI	GGATG	2 cut(s)	202, 518
FriOI	GRGCYC	2 cut(s)	149, 502
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	147, 389
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	2 cut(s)	379, 407
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
Hpy166II	GTNNAC	2 cut(s)	231, 352
Hpy8I	GTNNAC	2 cut(s)	231, 352
HpyAV	CCTTC	2 cut(s)	257, 486
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	108, 359, 441
HpyF3I	CTNAG	2 cut(s)	273, 340
Hsp92II	CATG	2 cut(s)	379, 407
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	85, 151, 282
LweI	GCATC	2 cut(s)	24, 531
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	112, 427
MalI	GATC	3 cut(s)	87, 153, 284
MboI	GATC	3 cut(s)	85, 151, 282
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	2 cut(s)	149, 502
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	3 cut(s)	255, 290, 564
MluNI	TGGCCA	1 cut(s)	389
MnlI	CCTC	3 cut(s)	136, 166, 333
Mox20I	TGGCCA	1 cut(s)	389
Mph1103I	ATGCAT	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	503
NdeII	GATC	3 cut(s)	85, 151, 282
NlaIII	CATG	2 cut(s)	379, 407
NlaIV	GGNNCC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	1 cut(s)	379
PctI	GAATGC	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	147
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	145, 146
RsaI	GTAC	2 cut(s)	29, 253
RsaNI	GTAC	2 cut(s)	28, 252
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	365
Sau3AI	GATC	3 cut(s)	85, 151, 282
Sau96I	GGNCC	2 cut(s)	145, 146
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	2 cut(s)	149, 502
SetI	ASST	3 cut(s)	274, 325, 436
SfaNI	GCATC	2 cut(s)	24, 531
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	3 cut(s)	255, 290, 564
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	18
TasI	AATT	3 cut(s)	255, 290, 564
TatI	WGTACW	2 cut(s)	27, 251
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	430
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.