Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

48384716 .. 48393834

Gene Structure 9119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGCATCTCGCAAATGCGTTCTCTGCGCTCAACGTCGACGTTGAAGACGACGATGAAATACGAGGGGCGCCTTCCACTTCCAAGGCCACAGAGGACACTTCAGGCAAGAGGGACAAAGCCAACAACTCTGATAACGTCGAAATGGCAGATCATGAGTACAAGATGCCCCTTGTATGGATTGACTTGGAAATGACTGGTTTGAATGTTGAAGTTGATCGGATACTGGAGATTGCTTGCATAGTTACCGATGGCCGACTAACCAAATCCATAGAGGGCCCTGATCTGGTTATTCATCAAAGTAAGGAGTGTTTGGATAGGATGGGAGAATGGTGTCAAACTCATCATAAAGATAGTGGGTTGACGACTAAAGTGCTTCAAAGTACAATTAGTGAAGGAGAAGCTGAAAAGCAGATCATAGAATTTGTAAAGAGAAACATTGGAACATATACACCTCTTTTAGCAGGAAACTCAGTTTATGTGGACTTTGCATTTTTAAAGGTAAGGCAGCTGACTTCTCCTGATTTCACTTTCAGTATTTTGATTATGAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

185

Amino Acids

20.71

Weight (kDa)

4.7

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	59 - 169	2.6e-21	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	2 cut(s)	161, 385
AfiI	CCNNNNNNNGG	2 cut(s)	177, 286
AgsI	TTSAA	4 cut(s)	47, 205, 212, 380
AluBI	AGCT	2 cut(s)	404, 511
AluI	AGCT	2 cut(s)	404, 511
AoxI	GGCC	3 cut(s)	87, 253, 277
ApaI	GGGCCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	508
ApoI	RAATTY	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	31, 73
AspS9I	GGNCC	2 cut(s)	277, 278
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	2 cut(s)	245, 316
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BciVI	GTATCC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	556
BfoI	RGCGCY	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	277, 278
BmiI	GGNNCC	2 cut(s)	72, 279
BmsI	GCATC	2 cut(s)	16, 156
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 286
Bse1I	ACTGG	2 cut(s)	202, 231
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	177, 286
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	202, 231
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	520
BshFI	GGCC	3 cut(s)	89, 255, 279
BshNI	GGYRCC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	177, 286
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	89, 255, 279
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	151, 217, 283, 414
BspANI	GGCC	3 cut(s)	89, 255, 279
BspCNI	CTCAG	1 cut(s)	485
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	72, 279
BspT107I	GGYRCC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	202, 231
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	4 cut(s)	151, 217, 283, 414
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	31, 73
BstKTI	GATC	4 cut(s)	154, 220, 286, 417
BstMBI	GATC	4 cut(s)	151, 217, 283, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	89, 255, 279
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	238
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	31, 73
Cfr13I	GGNCC	2 cut(s)	277, 278
Csp6I	GTAC	2 cut(s)	160, 384
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	6 cut(s)	89, 122, 255, 279, 404, 511
CviKI_1	RGCY	6 cut(s)	89, 122, 255, 279, 404, 511
CviQI	GTAC	2 cut(s)	160, 384
DdeI	CTNAG	1 cut(s)	472
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	4 cut(s)	153, 219, 285, 416
DpnII	GATC	4 cut(s)	151, 217, 283, 414
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	87
EcoO109I	RGGNCCY	2 cut(s)	277, 278
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	281
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	158
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	1 cut(s)	556
GlaI	GCGC	2 cut(s)	30, 72
GluI	GCNGC	1 cut(s)	509
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	89, 255, 279
HhaI	GCGC	2 cut(s)	31, 73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	2 cut(s)	29, 71
HinP1I	GCGC	2 cut(s)	29, 71
HincII	GTYRAC	2 cut(s)	40, 363
HindII	GTYRAC	2 cut(s)	40, 363
Hpy166II	GTNNAC	3 cut(s)	40, 363, 484
Hpy188I	TCNGA	2 cut(s)	133, 222
Hpy188III	TCNNGA	2 cut(s)	155, 521
Hpy8I	GTNNAC	3 cut(s)	40, 363, 484
Hpy99I	CGWCG	4 cut(s)	41, 44, 56, 143
HpyAV	CCTTC	2 cut(s)	84, 389
HpyCH4IV	ACGT	3 cut(s)	36, 42, 138
HpyCH4V	TGCA	2 cut(s)	240, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	472
HpySE526I	ACGT	3 cut(s)	36, 42, 138
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	2 cut(s)	29, 71
KasI	GGCGCC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	151, 217, 283, 414
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	90, 183, 212, 272, 294, 450, 534
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	2 cut(s)	16, 156
MaeI	CTAG	1 cut(s)	556
MaeII	ACGT	3 cut(s)	36, 42, 138
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	4 cut(s)	153, 219, 285, 416
MboI	GATC	4 cut(s)	151, 217, 283, 414
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	2 cut(s)	387, 422
Mly113I	GGCGCC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	59, 88, 105, 268, 465
MseI	TTAA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	511
MwoI	GCNNNNNNNGC	1 cut(s)	26
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	4 cut(s)	151, 217, 283, 414
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	2 cut(s)	72, 279
PagI	TCATGA	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	510
PluTI	GGCGCC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	72, 279
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	277, 278
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	2 cut(s)	161, 385
RsaNI	GTAC	2 cut(s)	160, 384
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	4 cut(s)	151, 217, 283, 414
Sau96I	GGNCC	2 cut(s)	277, 278
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	7 cut(s)	39, 45, 141, 406, 457, 504, 513
SfaNI	GCATC	2 cut(s)	16, 156
SfoI	GGCGCC	1 cut(s)	72
SgrDI	CGTCGACG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	387, 422
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	84
TaiI	ACGT	3 cut(s)	39, 45, 141
TaqI	TCGA	2 cut(s)	39, 141
TasI	AATT	2 cut(s)	387, 422
TatI	WGTACW	2 cut(s)	159, 383
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TseI	GCWGC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	72, 284
XapI	RAATTY	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.