Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

6204496 .. 6212237

Gene Structure 7742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G053500.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGGACCTCGCAAATGCATTCTCTGTGCTGGAGCTTGACGCTGAAGACGACGATCAAGCGCGAGAGGCCTCTTCTGTTTCCAAAAACAAAGATGACACTACAAAATCTTCAGGCAAGAAGACGGAGAAGAAAGTCAACAACTCTGATAACATTTTGCTAGTAAAAGAGAAAGAGACTCAGCAAAAGCCTCTAGAAAAGTACAAGTTGCCCCTGGTATGGATTGACTTGGAAATGACTGGTTTAAATGTTGAAGTTGATCGGATACTAGAGATTGCCTGTATAATTACTGATGGAAAATTAACCAAATCAGTAGAGGGCCCTGATTTGGTTATTCATCAAACTAAGGAGTGTTTAGATAGGATGGGCGAATGGTGTCAAAGTCATCATGAAGCTAGTGGGTTGACAAAAAAGGTGCTGGAAAGTACAATCAGTGAAAGAGAAGCTGAAAAGCAGGTCATAGAATTTGTAACGAGAAACGTAGGAACATATACACCTCAGTTAGCAGGCAATTCAGTTTATGTGGATTTTGCATTTTTAAAGAAATACATGCCAGATTTGGCTAGCCTTTTCTCCCATGTAATAGTGGATGTTAGCAGTGTTAAAGCTTTATGCATTCGCTGGTATCCTAGAGATAATAGGAATGCCCCTTCTAAAGAAAATAATCACAGAGCCATGGATGATATTAGAGAAAGTATCAGGGAACTTAAATACTACAAGGAGAATATATTCAAAGCATTTAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

250

Amino Acids

28.48

Weight (kDa)

5.69

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
AccII	CGCG	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	2 cut(s)	66, 96
AfaI	GTAC	2 cut(s)	203, 427
AfiI	CCNNNNNNNGG	2 cut(s)	219, 328
AgsI	TTSAA	2 cut(s)	254, 733
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	4 cut(s)	37, 395, 446, 608
AluI	AGCT	4 cut(s)	37, 395, 446, 608
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	2 cut(s)	69, 319
ApaI	GGGCCC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	7, 319, 320
AsuNHI	GCTAGC	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	2 cut(s)	54, 128
BccI	CCATC	2 cut(s)	287, 358
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	2 cut(s)	258, 636
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	6 cut(s)	161, 194, 269, 396, 564, 630
BfuAI	ACCTGC	1 cut(s)	445
BfuI	GTATCC	2 cut(s)	258, 636
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	3 cut(s)	7, 319, 320
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	215
BmtI	GCTAGC	1 cut(s)	567
BpiI	GAAGAC	2 cut(s)	54, 128
BpmI	CTGGAG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	213, 675
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 328
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	213, 675
BseGI	GGATG	3 cut(s)	369, 595, 685
BseLI	CCNNNNNNNGG	2 cut(s)	219, 328
BseMII	CTCAG	2 cut(s)	194, 512
BseNI	ACTGG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	71, 321
BslI	CCNNNNNNNGG	2 cut(s)	219, 328
BsmAI	GTCTC	1 cut(s)	170
BsmI	GAATGC	3 cut(s)	20, 615, 649
BsnI	GGCC	2 cut(s)	71, 321
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	55, 259
Bsp19I	CCATGG	1 cut(s)	675
BspANI	GGCC	2 cut(s)	71, 321
BspCNI	CTCAG	2 cut(s)	193, 511
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	445
BspOI	GCTAGC	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	213, 675
BssMI	GATC	2 cut(s)	55, 259
BssT1I	CCWWGG	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	508, 565
BstDEI	CTNAG	3 cut(s)	180, 345, 498
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	3 cut(s)	369, 595, 685
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	58, 262
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	55, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	64
BstV2I	GAAGAC	2 cut(s)	54, 128
BsuI	GTATCC	2 cut(s)	258, 636
BsuRI	GGCC	2 cut(s)	71, 321
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	3 cut(s)	369, 595, 685
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	2 cut(s)	439, 604
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	508, 565
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	7, 319, 320
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	202, 426
CviAII	CATG	4 cut(s)	389, 550, 578, 676
CviQI	GTAC	2 cut(s)	202, 426
DdeI	CTNAG	3 cut(s)	180, 345, 498
DpnI	GATC	2 cut(s)	57, 261
DpnII	GATC	2 cut(s)	55, 259
DraI	TTTAAA	3 cut(s)	246, 540, 742
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	675
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	66, 96
EcoO109I	RGGNCCY	3 cut(s)	7, 319, 320
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	675
EcoT22I	ATGCAT	2 cut(s)	22, 617
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	4 cut(s)	392, 553, 581, 679
FatI	CATG	4 cut(s)	388, 549, 577, 675
FokI	GGATG	3 cut(s)	376, 602, 692
FriOI	GRGCYC	1 cut(s)	323
FspBI	CTAG	6 cut(s)	161, 194, 269, 396, 564, 630
GlaI	GCGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	71, 321
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	392, 553, 581, 679
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	2 cut(s)	139, 405
HindII	GTYRAC	2 cut(s)	139, 405
HindIII	AAGCTT	1 cut(s)	606
HinfI	GANTC	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	139, 405
Hpy188I	TCNGA	2 cut(s)	148, 264
Hpy188III	TCNNGA	2 cut(s)	194, 389
Hpy8I	GTNNAC	2 cut(s)	139, 405
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	660
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	20, 533, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	180, 345, 498
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	392, 553, 581, 679
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	55, 259
LmnI	GCTCC	1 cut(s)	34
MaeI	CTAG	6 cut(s)	161, 194, 269, 396, 564, 630
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	2 cut(s)	57, 261
MboI	GATC	2 cut(s)	55, 259
MboII	GAAGA	5 cut(s)	59, 66, 102, 133, 142
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	4 cut(s)	285, 299, 464, 511
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	20, 61, 82, 201, 310, 507
Mph1103I	ATGCAT	2 cut(s)	22, 617
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	6 cut(s)	245, 302, 539, 603, 708, 741
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	3 cut(s)	20, 615, 649
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	675
NdeII	GATC	2 cut(s)	55, 259
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	4 cut(s)	392, 553, 581, 679
NlaIV	GGNNCC	1 cut(s)	321
NsiI	ATGCAT	2 cut(s)	22, 617
NspI	RCATGY	1 cut(s)	553
PagI	TCATGA	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	3 cut(s)	20, 615, 649
PdmI	GAANNNNTTC	1 cut(s)	728
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	321
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	3 cut(s)	7, 319, 320
PspPPI	RGGWCCY	1 cut(s)	7
RsaI	GTAC	2 cut(s)	203, 427
RsaNI	GTAC	2 cut(s)	202, 426
SaqAI	TTAA	6 cut(s)	245, 302, 539, 603, 708, 741
Sau3AI	GATC	2 cut(s)	55, 259
Sau96I	GGNCC	3 cut(s)	7, 319, 320
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	9 cut(s)	12, 39, 397, 417, 448, 459, 483, 499, 610
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	4 cut(s)	285, 299, 464, 511
SseBI	AGGCCT	1 cut(s)	71
SspMI	CTAG	6 cut(s)	161, 194, 269, 396, 564, 630
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	675
TaiI	ACGT	1 cut(s)	483
TasI	AATT	4 cut(s)	285, 299, 464, 511
TatI	WGTACW	2 cut(s)	201, 425
Tru1I	TTAA	6 cut(s)	245, 302, 539, 603, 708, 741
Tru9I	TTAA	6 cut(s)	245, 302, 539, 603, 708, 741
TscAI	CASTG	2 cut(s)	439, 604
TspDTI	ATGAA	2 cut(s)	326, 405
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	439, 604
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	464
XbaI	TCTAGA	1 cut(s)	193
XceI	RCATGY	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	6 cut(s)	161, 194, 269, 396, 564, 630
Zsp2I	ATGCAT	2 cut(s)	22, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.