Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Forward (+)

5900796 .. 5913597

Gene Structure 12802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGGTTACTATTTCCAGAAAAGAAAAAGAAAACTAAAGTTATGAGACCAAAATGTAAAATCCCAAAAGTATGGAGCATCATACCAAATCCCATCAATCGAATCGCTTTTGCGAGAAATACGAGACATCTAAGTCTTGGGATTGTAGTTCAAATGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGAACACTGACACTGAGCTCGACCAATCCAAACCTTAACCCTAACCCTAATTCTTCAAACCCGTTAGTCCCCGCCTGCTCCAATGGCCCTGCTGTCTGCCTTCTCAAGGTTGCCGGAGACTCCACTGGCAGGGCATTCATGGGCTCCATTTTTAGTTTAAATGTTGAAGTTGATCGGATACTAGAGATTGCCTGTATAATTACTGATGGAAAATTAACCAAATCAGTAGAGGGCCCTGATTTGGTTATTCATCAAACTAAGGAGTGTTTAGATAGGATGGGCGAATGGTGTCGAAGTCATCATAAAGCTAGTGGGTTGACAAAAAAGATGCTGGAAAGTACAATCAGTGAAAGAGAAGCTGAAAAGCAGGTCATAGAATTTGTAACGAGAATCGTAGGAACATATACACCTCAGTTAGCAGGCAATTCAGTTTATGTGGATTTTGCATTTTTAAAGAAATACATGCCAGATTTGGCTAGCCTTTTCTCCCATGTAATAGTGGATGTTAGCAGGGTTAAAGCTTTATGCATTCGCTGGTATCCTAGAGATAATAAGAATGCCCCTTCTAAAGAAAATAATCACAGAGCCATGGATGATATTAGAGAAAGTATCAGGGAACTTAAATACTACAAGGAGAATATATTCAAAGCATTTAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

288

Amino Acids

32.32

Weight (kDa)

9.63

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	559
AciI	CCGC	4 cut(s)	167, 180, 189, 273
AcsI	RAATTY	1 cut(s)	578
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	4 cut(s)	176, 307, 330, 442
AgsI	TTSAA	4 cut(s)	152, 258, 368, 847
AluBI	AGCT	5 cut(s)	186, 219, 509, 560, 722
AluI	AGCT	5 cut(s)	186, 219, 509, 560, 722
Alw21I	GWGCWC	2 cut(s)	166, 221
Alw26I	GTCTC	3 cut(s)	40, 118, 312
AoxI	GGCC	2 cut(s)	286, 433
ApaI	GGGCCC	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	842
AspS9I	GGNCC	3 cut(s)	287, 433, 434
AsuNHI	GCTAGC	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	437
BanII	GRGCYC	4 cut(s)	201, 221, 347, 437
Bbv12I	GWGCWC	2 cut(s)	166, 221
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	3 cut(s)	101, 401, 472
BciVI	GTATCC	2 cut(s)	372, 750
BcoDI	GTCTC	3 cut(s)	40, 118, 312
BfaI	CTAG	4 cut(s)	383, 510, 678, 744
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	2 cut(s)	372, 750
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	287, 433, 434
BmiI	GGNNCC	2 cut(s)	346, 435
BmsI	GCATC	2 cut(s)	87, 519
BmtI	GCTAGC	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	789
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 307, 330, 442
Bse1I	ACTGG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	3 cut(s)	483, 709, 799
BseLI	CCNNNNNNNGG	4 cut(s)	176, 307, 330, 442
BseMII	CTCAG	2 cut(s)	206, 626
BseNI	ACTGG	1 cut(s)	331
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	288, 435
BsiHKAI	GWGCWC	2 cut(s)	166, 221
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	4 cut(s)	176, 307, 330, 442
BsmAI	GTCTC	3 cut(s)	40, 118, 312
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	3 cut(s)	335, 729, 763
BsnI	GGCC	2 cut(s)	288, 435
Bso31I	GGTCTC	1 cut(s)	40
Bsp120I	GGGCCC	1 cut(s)	433
Bsp1286I	GDGCHC	5 cut(s)	166, 201, 221, 347, 437
Bsp143I	GATC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	4 cut(s)	167, 180, 189, 273
BspANI	GGCC	2 cut(s)	288, 435
BspCNI	CTCAG	2 cut(s)	207, 625
BspLI	GGNNCC	2 cut(s)	346, 435
BspMI	ACCTGC	1 cut(s)	559
BspOI	GCTAGC	1 cut(s)	681
BspTNI	GGTCTC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	789
BstC8I	GCNNGC	3 cut(s)	277, 622, 679
BstDEI	CTNAG	4 cut(s)	131, 215, 459, 612
BstDSI	CCRYGG	1 cut(s)	789
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	483, 709, 799
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	3 cut(s)	40, 118, 312
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 285
BstNSI	RCATGY	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	72
BsuI	GTATCC	2 cut(s)	372, 750
BsuRI	GGCC	2 cut(s)	288, 435
BtgI	CCRYGG	1 cut(s)	789
BtsCI	GGATG	3 cut(s)	483, 709, 799
BtsIMutI	CAGTG	4 cut(s)	206, 212, 324, 553
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	3 cut(s)	277, 622, 679
Cfr13I	GGNCC	3 cut(s)	287, 433, 434
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	4 cut(s)	340, 664, 692, 790
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	4 cut(s)	131, 215, 459, 612
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
DraI	TTTAAA	3 cut(s)	360, 654, 856
DrdI	GACNNNNNNGTC	1 cut(s)	132
DseDI	GACNNNNNNGTC	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	789
Eco24I	GRGCYC	4 cut(s)	201, 221, 347, 437
Eco31I	GGTCTC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	433, 434
EcoT14I	CCWWGG	1 cut(s)	789
EcoT22I	ATGCAT	1 cut(s)	731
EcoT38I	GRGCYC	4 cut(s)	201, 221, 347, 437
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	4 cut(s)	343, 667, 695, 793
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	339, 663, 691, 789
FauI	CCCGC	2 cut(s)	182, 280
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	3 cut(s)	490, 716, 806
FriOI	GRGCYC	4 cut(s)	201, 221, 347, 437
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	4 cut(s)	383, 510, 678, 744
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	288, 435
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	4 cut(s)	343, 667, 695, 793
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	3 cut(s)	102, 320, 591
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	2 cut(s)	161, 378
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	311, 774
HpyCH4V	TGCA	2 cut(s)	647, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 285
HpyF3I	CTNAG	4 cut(s)	131, 215, 459, 612
Hsp92II	CATG	4 cut(s)	343, 667, 695, 793
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	3 cut(s)	75, 284, 350
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	2 cut(s)	87, 519
MaeI	CTAG	4 cut(s)	383, 510, 678, 744
MaeIII	GTNAC	2 cut(s)	6, 583
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	1 cut(s)	246
MhlI	GDGCHC	5 cut(s)	166, 201, 221, 347, 437
MluCI	AATT	5 cut(s)	250, 399, 413, 578, 625
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	424, 621
Mph1103I	ATGCAT	1 cut(s)	731
MroXI	GAANNNNTTC	1 cut(s)	842
MseI	TTAA	7 cut(s)	237, 359, 416, 653, 717, 822, 855
MspI	CCGG	1 cut(s)	315
Mva1269I	GAATGC	3 cut(s)	335, 729, 763
MwoI	GCNNNNNNNGC	2 cut(s)	186, 285
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	1 cut(s)	373
NheI	GCTAGC	1 cut(s)	677
NlaIII	CATG	4 cut(s)	343, 667, 695, 793
NlaIV	GGNNCC	2 cut(s)	346, 435
NsiI	ATGCAT	1 cut(s)	731
NspI	RCATGY	1 cut(s)	667
PctI	GAATGC	3 cut(s)	335, 729, 763
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	2 cut(s)	102, 591
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	346, 435
PspOMI	GGGCCC	1 cut(s)	433
PspPI	GGNCC	3 cut(s)	287, 433, 434
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	7 cut(s)	237, 359, 416, 653, 717, 822, 855
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	3 cut(s)	287, 433, 434
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	5 cut(s)	166, 201, 221, 347, 437
SfaNI	GCATC	2 cut(s)	87, 519
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	5 cut(s)	250, 399, 413, 578, 625
SsiI	CCGC	4 cut(s)	167, 180, 189, 273
SspMI	CTAG	4 cut(s)	383, 510, 678, 744
SstI	GAGCTC	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	789
TaqI	TCGA	4 cut(s)	100, 195, 221, 493
TasI	AATT	5 cut(s)	250, 399, 413, 578, 625
TatI	WGTACW	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	102, 591
Tru1I	TTAA	7 cut(s)	237, 359, 416, 653, 717, 822, 855
Tru9I	TTAA	7 cut(s)	237, 359, 416, 653, 717, 822, 855
TscAI	CASTG	4 cut(s)	213, 219, 331, 553
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	328, 440
TspRI	CASTG	4 cut(s)	213, 219, 331, 553
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	842
XspI	CTAG	4 cut(s)	383, 510, 678, 744
Zsp2I	ATGCAT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.