Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Reverse (-)

3362976 .. 3367659

Gene Structure 4684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGATCATTTTTGGTCTAGACAGACCAAATCGAAATTCGAACCCAAAAATATTTTTTCTGACAAACTTAAAATACGTTCAAATGAGTTTAAAGTTTCAGAACCAAACCCAAGCAATCGTAATCAACAGAGACAGAGAAACAATGGAGTTCCTCGAAAATGCATTCTCTGCGCTGGAGATTGACGCCGAAAACGACAATCCAACTTCGTCTTCTTCCGATGGCACTAGAAAATCTTCAGGCAATAGCAAAAAGAAAGTCAACGACTCTGATAACAAGTTGCTGGTAAATGAGAAGCAGAGTAAGAAAAATACAGAGATACCTCCAGAAGAGTGCAAAATGCCACTGATATGGATTGACTTGGAAATGACTGGTTTGAATGTTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGATGGAAGATTAACCAAATCGGTGGAGGGCCCTGATTTAGTTATCCACCAAACCAAGGAGTGTTTAGATAGAATGGGAGAATGGTGTCAAACACATCATGCAGCTAGTGGGTTGGCAACAAAAGTGCTCAAAAGTTCGATTAGTGAAAGAGAAGCTGAACAGCAGGTCATAGAATTTGTAAAGAGAAACATTGGAACATATCAACCTCTCCTAGCAGGAAATTCAGTTTATGTAGATTTTGTGTTTTTGAAGAAGTACATGCCGGATCTGGCTAGCCTTTTCTCCCATGTACTAGTGGATGTTAGCAGTATTAAAGCTCTATGCATTCGCTGGTATCCTAAAGATAATAAGAAAGCCCCTTGTAAAGAAAATAAACACAGAGCCTTGGATGATATCAGAGAAAGCATCAAAGAACTCAAATACTACAAGGAGAATATATTCAAAGGATTCAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

293

Amino Acids

33.47

Weight (kDa)

8.39

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AclWI	GGATC	1 cut(s)	693
AcsI	RAATTY	3 cut(s)	34, 593, 640
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	677, 711
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	80, 376, 383, 670, 862
AhlI	ACTAGT	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	4 cut(s)	19, 51, 193, 225
AluBI	AGCT	3 cut(s)	524, 575, 737
AluI	AGCT	3 cut(s)	524, 575, 737
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	693
AoxI	GGCC	1 cut(s)	448
ApaI	GGGCCC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	3 cut(s)	34, 593, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
Asp700I	GAANNNNTTC	2 cut(s)	232, 857
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	448, 449
AsuII	TTCGAA	1 cut(s)	38
AsuNHI	GCTAGC	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	533
BccI	CCATC	2 cut(s)	212, 416
BciVI	GTATCC	1 cut(s)	765
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	6 cut(s)	17, 225, 525, 632, 693, 713
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	765
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	448, 449
BmiI	GGNNCC	1 cut(s)	450
BmsI	GCATC	1 cut(s)	834
BmtI	GCTAGC	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	3 cut(s)	194, 306, 419
Bpu14I	TTCGAA	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	474, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	2 cut(s)	373, 402
BseDI	CCNNGG	2 cut(s)	474, 804
BseGI	GGATG	2 cut(s)	724, 814
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseNI	ACTGG	2 cut(s)	373, 402
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	533
BshFI	GGCC	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	123
BsmI	GAATGC	2 cut(s)	161, 744
BsnI	GGCC	1 cut(s)	450
Bsp119I	TTCGAA	1 cut(s)	38
Bsp120I	GGGCCC	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	452, 549
Bsp143I	GATC	3 cut(s)	3, 388, 685
BspANI	GGCC	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	574
BspOI	GCTAGC	1 cut(s)	696
BspPI	GGATC	1 cut(s)	693
BspT104I	TTCGAA	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	373, 402
BssECI	CCNNGG	2 cut(s)	474, 804
BssMI	GATC	3 cut(s)	3, 388, 685
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	474, 804
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	694
BstF5I	GGATG	2 cut(s)	724, 814
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	3 cut(s)	6, 391, 688
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	3 cut(s)	3, 388, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	682
BstSLI	GKGCMC	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	533
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	685
BstXI	CCANNNNNNTGG	2 cut(s)	348, 442
BstYI	RGATCY	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	724, 814
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	694
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	448, 449
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	676, 710
CviAII	CATG	3 cut(s)	518, 679, 707
CviJI	RGCY	8 cut(s)	450, 524, 575, 692, 696, 737, 776, 803
CviKI_1	RGCY	8 cut(s)	450, 524, 575, 692, 696, 737, 776, 803
CviQI	GTAC	2 cut(s)	676, 710
DpnI	GATC	3 cut(s)	5, 390, 687
DpnII	GATC	3 cut(s)	3, 388, 685
DraI	TTTAAA	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	474, 804
Eco24I	GRGCYC	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	2 cut(s)	448, 449
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	2 cut(s)	474, 804
EcoT22I	ATGCAT	2 cut(s)	163, 746
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	2 cut(s)	474, 804
FaeI	CATG	3 cut(s)	521, 682, 710
FatI	CATG	3 cut(s)	517, 678, 706
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	2 cut(s)	731, 821
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	6 cut(s)	17, 225, 525, 632, 693, 713
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	522
GsuI	CTGGAG	3 cut(s)	194, 306, 419
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	521, 682, 710
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	2 cut(s)	263, 867
HpaII	CCGG	1 cut(s)	683
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	6 cut(s)	60, 99, 217, 268, 818, 872
Hpy188III	TCNNGA	2 cut(s)	17, 323
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	161, 333, 521, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	521, 682, 710
HspAI	GCGC	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 388, 685
Lsp1109I	GCAGC	1 cut(s)	533
LweI	GCATC	1 cut(s)	834
MaeI	CTAG	6 cut(s)	17, 225, 525, 632, 693, 713
MaeII	ACGT	1 cut(s)	75
MalI	GATC	3 cut(s)	5, 390, 687
MboI	GATC	3 cut(s)	3, 388, 685
MboII	GAAGA	6 cut(s)	201, 204, 225, 338, 438, 682
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	2 cut(s)	452, 549
MluCI	AATT	4 cut(s)	34, 414, 593, 640
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	161, 330, 439, 636
Mph1103I	ATGCAT	2 cut(s)	163, 746
MroXI	GAANNNNTTC	2 cut(s)	232, 857
MseI	TTAA	4 cut(s)	68, 89, 431, 732
MslI	CAYNNNNRTG	1 cut(s)	346
MspI	CCGG	1 cut(s)	683
Mva1269I	GAATGC	2 cut(s)	161, 744
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	3 cut(s)	3, 388, 685
NheI	GCTAGC	1 cut(s)	692
NlaIII	CATG	3 cut(s)	521, 682, 710
NlaIV	GGNNCC	1 cut(s)	450
NsiI	ATGCAT	2 cut(s)	163, 746
NspI	RCATGY	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	2 cut(s)	161, 744
PdmI	GAANNNNTTC	2 cut(s)	232, 857
PfeI	GAWTC	1 cut(s)	867
PkrI	GCNGC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	450
PspOMI	GGGCCC	1 cut(s)	448
PspPI	GGNCC	2 cut(s)	448, 449
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	2 cut(s)	677, 711
RsaNI	GTAC	2 cut(s)	676, 710
RseI	CAYNNNNRTG	1 cut(s)	346
SaqAI	TTAA	4 cut(s)	68, 89, 431, 732
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	3 cut(s)	3, 388, 685
Sau96I	GGNCC	2 cut(s)	448, 449
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	452, 549
SetI	ASST	7 cut(s)	78, 322, 526, 577, 588, 628, 739
SfaNI	GCATC	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	346
SpeI	ACTAGT	1 cut(s)	712
Sse9I	AATT	4 cut(s)	34, 414, 593, 640
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	6 cut(s)	17, 225, 525, 632, 693, 713
StyI	CCWWGG	2 cut(s)	474, 804
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	5 cut(s)	31, 38, 153, 391, 557
TasI	AATT	4 cut(s)	34, 414, 593, 640
TatI	WGTACW	2 cut(s)	675, 709
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	4 cut(s)	68, 89, 431, 732
Tru9I	TTAA	4 cut(s)	68, 89, 431, 732
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	1 cut(s)	521
TspRI	CASTG	1 cut(s)	348
XapI	RAATTY	3 cut(s)	34, 593, 640
XbaI	TCTAGA	1 cut(s)	16
XceI	RCATGY	1 cut(s)	682
XmnI	GAANNNNTTC	2 cut(s)	232, 857
XspI	CTAG	6 cut(s)	17, 225, 525, 632, 693, 713
Zsp2I	ATGCAT	2 cut(s)	163, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.