Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002348

Physical Location & Seq

Genomic Coordinates Forward (+)

43388409 .. 43396815

Gene Structure 8407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGCATCTGGCAAATGCATTCTCTGCGCTCAACGTTGACGTTGAAGACGACGATGAAATACGAGGGGCGCCTTCTACTTCCAAGCCCACAGAGGACACTTCAGGCAAGAGGAACAAAGCCAACAACTCTGATAACGTCTTGATGGCAAATGAGAAACTGTGTGAAGACTACAAGCTGCCCCTTGTATGGATTGACTTGGAAATGACCGGTTTGAATGTTGAAGTTGATCGGATACTGGAGATTGCTTGCATAGTTACCGATGGCAGACTAACCAAATCCATAGAGGGCCCTGATCTGGTTATTCATCAAAGTAAGGAGTGTTTGGATAGGATGGGAGAATGGTGTCAAACTCATCATAAAGATAGTGGGTTGATGACTAAAGTGCTTCAAAGTACAATTAGTGAAGGAGAAGCTGAAAAGCAGATCATAGAATTTGTAAAGAGAAACATTGGAACATATACACCTCTTTTAGCAGGAAACTCAGTTTATGTGGACTTTGCATTTTTAAAGAAATACATGCCAGATTTGGCCAGCCTGTTCTCCCATGTAGTAGTTGATGTTAGCAGTGTTACAGCTCTATGCGTTCGCTGGTATCCTAGAGATAAAAAGAAAGCGCCTTCTAAAGAAAATAAACACAGAGCCCTGGATGACATCAGGGAAAGCATCAAGGAACTGAAATACTACAAGCAGAATATATTCAAAGCAATTAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

239

Amino Acids

27.11

Weight (kDa)

5.75

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	63 - 226	2.7e-34	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26970 AT2G26970
fragaria_vesca	FvH4_3g27591
malus_domestica	MD02G1268200.v1.1 MD07G1051600.v1.1
prunus_persica	Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G051000_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1 Prupe.2G053500_v2.0.a1
pyrus_communis	pycom02g22980 pycom05g27200 pycom07g03930 pycom08g10140
rosa_chinensis	RchiOBHm_Chr5g0050091
rosa_laevigata	RLG00000034685
rosa_roxburghii	Rroxscaffold_1G00031060
rosa_rugosa	Rorug05G0258300 Rorug05G0258400
rosa_samantha	Rh5AG330400 Rh5BG341100 Rh5DG353900
rosa_wichuraiana	Rw5G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AclI	AACGTT	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	189, 298
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	47, 217, 224, 392, 703
AjnI	CCWGG	1 cut(s)	645
AluBI	AGCT	3 cut(s)	178, 416, 578
AluI	AGCT	3 cut(s)	178, 416, 578
AoxI	GGCC	2 cut(s)	289, 531
ApaI	GGGCCC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	434
AsiGI	ACCGGT	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	3 cut(s)	31, 73, 619
AspS9I	GGNCC	2 cut(s)	289, 290
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	293, 646
BbsI	GAAGAC	2 cut(s)	54, 174
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	3 cut(s)	139, 257, 328
BciT130I	CCWGG	1 cut(s)	647
BciVI	GTATCC	2 cut(s)	228, 606
BfaI	CTAG	1 cut(s)	600
BfoI	RGCGCY	2 cut(s)	74, 620
BfuI	GTATCC	2 cut(s)	228, 606
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	289, 290
BmiI	GGNNCC	2 cut(s)	72, 291
BmrFI	CCNGG	1 cut(s)	647
BmsI	GCATC	2 cut(s)	16, 675
BpiI	GAAGAC	2 cut(s)	54, 174
BpmI	CTGGAG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	645
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 298
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	2 cut(s)	339, 655
BseLI	CCNNNNNNNGG	2 cut(s)	189, 298
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	2 cut(s)	291, 533
BshNI	GGYRCC	1 cut(s)	70
BshTI	ACCGGT	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	189, 298
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	291, 533
Bsp120I	GGGCCC	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	293, 646
Bsp143I	GATC	3 cut(s)	229, 295, 426
BspANI	GGCC	2 cut(s)	291, 533
BspCNI	CTCAG	1 cut(s)	497
BspLI	GGNNCC	2 cut(s)	72, 291
BspT107I	GGYRCC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	3 cut(s)	229, 295, 426
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	250, 535
BstDEI	CTNAG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	339, 655
BstH2I	RGCGCY	2 cut(s)	74, 620
BstHHI	GCGC	3 cut(s)	31, 73, 619
BstKTI	GATC	3 cut(s)	232, 298, 429
BstMBI	GATC	3 cut(s)	229, 295, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	645
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	2 cut(s)	54, 174
BsuI	GTATCC	2 cut(s)	228, 606
BsuRI	GGCC	2 cut(s)	291, 533
BtsCI	GGATG	2 cut(s)	339, 655
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	250, 535
CfoI	GCGC	3 cut(s)	31, 73, 619
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	289, 290
Csp6I	GTAC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	209
CviAII	CATG	2 cut(s)	520, 548
CviJI	RGCY	9 cut(s)	88, 122, 178, 291, 416, 533, 537, 578, 644
CviKI_1	RGCY	9 cut(s)	88, 122, 178, 291, 416, 533, 537, 578, 644
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	484
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	3 cut(s)	231, 297, 428
DpnII	GATC	3 cut(s)	229, 295, 426
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	1 cut(s)	531
Eco24I	GRGCYC	2 cut(s)	293, 646
Eco57I	CTGAAG	1 cut(s)	87
EcoO109I	RGGNCCY	2 cut(s)	289, 290
EcoRII	CCWGG	1 cut(s)	645
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	293, 646
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
FaeI	CATG	2 cut(s)	523, 551
FatI	CATG	2 cut(s)	519, 547
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	346, 662
FriOI	GRGCYC	2 cut(s)	293, 646
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	3 cut(s)	30, 72, 618
GluI	GCNGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	2 cut(s)	74, 620
HaeIII	GGCC	2 cut(s)	291, 533
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	3 cut(s)	31, 73, 619
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	523, 551
Hin6I	GCGC	3 cut(s)	29, 71, 617
HinP1I	GCGC	3 cut(s)	29, 71, 617
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	40, 496
Hpy188I	TCNGA	2 cut(s)	133, 234
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	40, 496
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	84, 401, 630
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	3 cut(s)	36, 42, 138
HpyCH4V	TGCA	3 cut(s)	20, 252, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	484
HpySE526I	ACGT	3 cut(s)	36, 42, 138
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	523, 551
HspAI	GCGC	3 cut(s)	29, 71, 617
KasI	GGCGCC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	229, 295, 426
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	16, 675
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	3 cut(s)	36, 42, 138
MaeIII	GTNAC	2 cut(s)	256, 571
MalI	GATC	3 cut(s)	231, 297, 428
MboI	GATC	3 cut(s)	229, 295, 426
MboII	GAAGA	2 cut(s)	59, 179
MhlI	GDGCHC	2 cut(s)	293, 646
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	3 cut(s)	399, 434, 708
MluNI	TGGCCA	1 cut(s)	533
Mly113I	GGCGCC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	59, 88, 105, 280, 477
Mox20I	TGGCCA	1 cut(s)	533
Mph1103I	ATGCAT	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	698
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	1 cut(s)	26
NarI	GGCGCC	1 cut(s)	71
NdeII	GATC	3 cut(s)	229, 295, 426
NlaIII	CATG	2 cut(s)	523, 551
NlaIV	GGNNCC	2 cut(s)	72, 291
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	698
PinAI	ACCGGT	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	180
PluTI	GGCGCC	1 cut(s)	74
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	2 cut(s)	72, 291
PspOMI	GGGCCC	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	289, 290
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	3 cut(s)	229, 295, 426
Sau96I	GGNCC	2 cut(s)	289, 290
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	2 cut(s)	293, 646
SetI	ASST	7 cut(s)	39, 45, 141, 180, 418, 469, 580
SfaNI	GCATC	2 cut(s)	16, 675
SfoI	GGCGCC	1 cut(s)	72
Sse9I	AATT	3 cut(s)	399, 434, 708
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	645
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	3 cut(s)	39, 45, 141
TasI	AATT	3 cut(s)	399, 434, 708
TatI	WGTACW	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	72, 296
TspRI	CASTG	1 cut(s)	574
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	1 cut(s)	600
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.