AT2G28600

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12251784 .. 12254872
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28600.1

Sequence Viewer

Length: 1509 bp
ATGGCGAAAGGAGACGATAATGTGCAGAGGAAGAAGAATAAAGTGACGAGGAAGAAGATGAGTAGGAAGAACGATACCGCCACCGTATCTGCTCGTATCGCCGCCATTATCGCCGCCAAGAAACGTCGCAAGTCTGGCAAACGCAGCATGTGTCAGGGAATGTGTTTTACTCTTCCTACACTTGAAGATCCATTCAATGAAAGGCAAGGTAAAGCTGATATTACTAAAAAGAAGAAGAAAAAGAAAAAGGTGAAGAGTAGAGAAGACAAGAAACCATCTCCTATGTCTATTGAAGGTGTTGAGAAGATGGATGGTCCACCAAAGTTTCTGATGTTAAACTTGAATGAGATTGAGAGCTCATTTCGTAAAGATATTACATACAGTGAACAACATGATAAGTCTTTGTTTACTAGTAGTTGGGGGATTGAGTTCTGGAAATGTTACTCATCTGGGAATGATATTTTGGACACGAGTGGAATGTCTTCCACTGTGGAACAGATTGCTTGGATTGTTTCTACTGCTGCTGATGCTATTGCTAGACGGGAGAAAGACGAGGTGGAGGAGGAGGAGGAGTTGTTGGGAAACAGTCCTTTTCTTTTGTACCTTGTGCCATCTCAGTCTAAAGCTTCTCAGGTTCGATCGGTTTGCAAGGCACTGAAAGGTATTGGAATTCATACTGTGAGCTTACACCAAGGAGCACCACTAGATCATCAGATTTCCGGATTAAAAAGCGTTGAGCCTGAATTTATAGTTGCTACACCTGAGAGACTTTTGGAGATTGTTACCTTGAAGGGTGTTGATATATCCAACGTTTCATTGCTGGTCATCGATGAACTAGGTTCACTGTGCAGTGGTGGTTATCTAAATGCTGTTAAATCCATCAAGCAGGCCATTTCCAGCAAACACCAAACTATAGTTTTTAACAACAGTTTTAGTGCTTCCATTATTCCGGCCGTACAGAGTTTCTTGGGGGGATCAGTTAACAGAGTTACTGTCAATGAGTCTGTTGCCAGCCAAGGCTCTTGTATTACCCAGACTGTTAGTGTATGCGCCTCGGAGGAAAAAAAACTGCAGAAGTTCGCAAAGCATCTGGATTCATCTTCGTCGAAGTTAATATACATTGTTACGAAGGAGGAAAGTTTCAAAAAGATAATGGCTATCCTTAAGCTCAAGGGTATCTCTGTATCAACCAGTAGTGATTCAAAACTCTCAGAGGTCAAAAAGAGCCGGAAACCTGTGGCGCACTTGATTGATTTTGAACAGTTGGATACTACAGTTATGAGGGACTCTGAAACCGTTCTACTTCCAGACTTTTTCCCATCAATCGAAATTTACACTCAGATTCTGACAAGTATGGCTAGAGAGAGTGCTCACGGCGTACTTCACAGCTATATAACAGAAAAGGATGCTGCTTCTTATCAAGCTGGACCATTGGTGAATGTCCTGGAGAATTGTGGTCAGAACGTACCTGACCGTTGGAGGAATATGGATGTTGCTATGTCTGATTGA

Protein Analysis

502

Amino Acids

55.45

Weight (kDa)

9.09

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 194 - 308 8.4e-12 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 719
AciI CCGC 3 cut(s) 78, 102, 114
AclI AACGTT 1 cut(s) 810
AclWI GGATC 2 cut(s) 182, 982
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 3 cut(s) 669, 743, 1329
AfaI GTAC 4 cut(s) 602, 957, 1380, 1467
AflII CTTAAG 1 cut(s) 1163
AgsI TTSAA 8 cut(s) 185, 196, 293, 343, 790, 1144, 1203, 1259
AhlI ACTAGT 1 cut(s) 410
AjnI CCWGG 1 cut(s) 1443
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 7 cut(s) 215, 357, 626, 684, 1168, 1389, 1424
AluI AGCT 7 cut(s) 215, 357, 626, 684, 1168, 1389, 1424
Alw21I GWGCWC 3 cut(s) 359, 700, 1372
Alw26I GTCTC 2 cut(s) 6, 760
AlwI GGATC 2 cut(s) 182, 982
AlwNI CAGNNNCTG 1 cut(s) 1345
Aor13HI TCCGGA 1 cut(s) 719
AoxI GGCC 2 cut(s) 888, 951
ApeKI GCWGC 3 cut(s) 144, 521, 1409
ApoI RAATTY 3 cut(s) 669, 743, 1329
Asp700I GAANNNNTTC 2 cut(s) 481, 1296
AspLEI GCGC 2 cut(s) 1052, 1243
AspS9I GGNCC 2 cut(s) 314, 1427
AsuHPI GGTGA 2 cut(s) 262, 1447
AvaII GGWCC 2 cut(s) 314, 1427
BaeI ACNNNNGTAYC 2 cut(s) 1260, 1293
BanII GRGCYC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 1100, 1132
BauI CACGAG 1 cut(s) 469
BbsI GAAGAC 2 cut(s) 270, 474
Bbv12I GWGCWC 3 cut(s) 359, 700, 1372
BbvI GCAGC 3 cut(s) 156, 508, 1396
BccI CCATC 6 cut(s) 283, 301, 305, 619, 887, 1327
BceAI ACGGC 2 cut(s) 938, 1390
BcgI CGANNNNNNTGC 2 cut(s) 627, 661
BciT130I CCWGG 1 cut(s) 1445
BciVI GTATCC 1 cut(s) 1261
BcoDI GTCTC 2 cut(s) 6, 760
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 5 cut(s) 411, 537, 704, 836, 1359
BfmI CTRYAG 3 cut(s) 912, 1070, 1272
BfrI CTTAAG 1 cut(s) 1163
BfuI GTATCC 1 cut(s) 1261
BisI GCNGC 5 cut(s) 102, 114, 145, 522, 1410
BlsI GCNGC 5 cut(s) 103, 115, 146, 523, 1411
Bme1390I CCNGG 1 cut(s) 1445
Bme18I GGWCC 2 cut(s) 314, 1427
BmgT120I GGNCC 2 cut(s) 314, 1427
BmrFI CCNGG 1 cut(s) 1445
BmsI GCATC 3 cut(s) 517, 1096, 1396
BpiI GAAGAC 2 cut(s) 270, 474
BpmI CTGGAG 1 cut(s) 1466
BpuEI CTTGAG 1 cut(s) 1154
Bsa29I ATCGAT 1 cut(s) 828
BsaJI CCNNGG 3 cut(s) 691, 1015, 1053
BsaWI WCCGGW 1 cut(s) 719
BsaXI ACNNNNNCTCC 4 cut(s) 557, 560, 587, 590
Bse1I ACTGG 1 cut(s) 1191
Bse3DI GCAATG 1 cut(s) 815
BseAI TCCGGA 1 cut(s) 719
BseBI CCWGG 1 cut(s) 1445
BseCI ATCGAT 1 cut(s) 828
BseDI CCNNGG 3 cut(s) 691, 1015, 1053
BseGI GGATG 3 cut(s) 316, 1411, 1495
BseMI GCAATG 1 cut(s) 815
BseMII CTCAG 5 cut(s) 629, 644, 753, 1224, 1352
BseNI ACTGG 1 cut(s) 1191
BseRI GAGGAG 4 cut(s) 575, 578, 581, 584
BseX3I CGGCCG 1 cut(s) 951
BseXI GCAGC 3 cut(s) 156, 508, 1396
BsgI GTGCAG 2 cut(s) 44, 868
Bsh1285I CGRYCG 2 cut(s) 641, 954
BshFI GGCC 2 cut(s) 890, 953
BshVI ATCGAT 1 cut(s) 828
BsiEI CGRYCG 2 cut(s) 641, 954
BsiHKAI GWGCWC 3 cut(s) 359, 700, 1372
BsiSI CCGG 3 cut(s) 720, 950, 1228
BslFI GGGAC 1 cut(s) 1298
BsmAI GTCTC 2 cut(s) 6, 760
BsmBI CGTCTC 1 cut(s) 6
BsmFI GGGAC 1 cut(s) 1298
BsnI GGCC 2 cut(s) 890, 953
Bsp1286I GDGCHC 3 cut(s) 359, 700, 1372
Bsp13I TCCGGA 1 cut(s) 719
Bsp143I GATC 4 cut(s) 187, 638, 706, 974
BspACI CCGC 3 cut(s) 78, 102, 114
BspANI GGCC 2 cut(s) 890, 953
BspCNI CTCAG 5 cut(s) 628, 643, 754, 1223, 1351
BspDI ATCGAT 1 cut(s) 828
BspEI TCCGGA 1 cut(s) 719
BspMAI CTGCAG 1 cut(s) 1074
BspPI GGATC 2 cut(s) 182, 982
BspTI CTTAAG 1 cut(s) 1163
BsrDI GCAATG 1 cut(s) 815
BsrI ACTGG 1 cut(s) 1191
BssECI CCNNGG 3 cut(s) 691, 1015, 1053
BssMI GATC 4 cut(s) 187, 638, 706, 974
BssSI CACGAG 1 cut(s) 469
BssT1I CCWWGG 2 cut(s) 691, 1015
Bst2BI CACGAG 1 cut(s) 469
Bst2UI CCWGG 1 cut(s) 1445
Bst6I CTCTTC 2 cut(s) 177, 248
BstAFI CTTAAG 1 cut(s) 1163
BstC8I GCNNGC 2 cut(s) 888, 1012
BstDEI CTNAG 5 cut(s) 615, 630, 762, 1210, 1338
BstF5I GGATG 3 cut(s) 316, 1411, 1495
BstHHI GCGC 2 cut(s) 1052, 1243
BstKTI GATC 4 cut(s) 190, 641, 709, 977
BstMAI GTCTC 2 cut(s) 6, 760
BstMBI GATC 4 cut(s) 187, 638, 706, 974
BstMCI CGRYCG 2 cut(s) 641, 954
BstMWI GCNNNNNNNGC 5 cut(s) 98, 110, 135, 144, 527
BstNI CCWGG 1 cut(s) 1445
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 1443
BstSFI CTRYAG 3 cut(s) 912, 1070, 1272
BstV1I GCAGC 3 cut(s) 156, 508, 1396
BstV2I GAAGAC 2 cut(s) 270, 474
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BstZI CGGCCG 1 cut(s) 951
Bsu15I ATCGAT 1 cut(s) 828
BsuI GTATCC 1 cut(s) 1261
BsuRI GGCC 2 cut(s) 890, 953
BsuTUI ATCGAT 1 cut(s) 828
BtsCI GGATG 3 cut(s) 316, 1411, 1495
BtsI GCAGTG 1 cut(s) 856
BtsIMutI CAGTG 5 cut(s) 388, 486, 653, 842, 856
Cac8I GCNNGC 2 cut(s) 888, 1012
CaiI CAGNNNCTG 1 cut(s) 1345
CfoI GCGC 2 cut(s) 1052, 1243
Cfr13I GGNCC 2 cut(s) 314, 1427
ClaI ATCGAT 1 cut(s) 828
Csp6I GTAC 4 cut(s) 601, 956, 1379, 1466
CviAII CATG 2 cut(s) 148, 392
CviQI GTAC 4 cut(s) 601, 956, 1379, 1466
DdeI CTNAG 5 cut(s) 615, 630, 762, 1210, 1338
DpnI GATC 4 cut(s) 189, 640, 708, 976
DpnII GATC 4 cut(s) 187, 638, 706, 974
EaeI YGGCCR 1 cut(s) 951
EagI CGGCCG 1 cut(s) 951
Eam1104I CTCTTC 2 cut(s) 177, 248
EarI CTCTTC 2 cut(s) 177, 248
Ecl136II GAGCTC 1 cut(s) 357
EclXI CGGCCG 1 cut(s) 951
Eco130I CCWWGG 2 cut(s) 691, 1015
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 314, 1427
Eco52I CGGCCG 1 cut(s) 951
Eco53kI GAGCTC 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 669
EcoRII CCWGG 1 cut(s) 1443
EcoT14I CCWWGG 2 cut(s) 691, 1015
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 2 cut(s) 691, 1015
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 2 cut(s) 151, 395
FaqI GGGAC 1 cut(s) 1298
FatI CATG 2 cut(s) 147, 391
Fnu4HI GCNGC 5 cut(s) 102, 114, 145, 522, 1410
FokI GGATG 3 cut(s) 323, 1418, 1502
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 5 cut(s) 102, 114, 145, 522, 1410
FspBI CTAG 5 cut(s) 411, 537, 704, 836, 1359
GlaI GCGC 2 cut(s) 1051, 1242
GluI GCNGC 5 cut(s) 102, 114, 145, 522, 1410
GsuI CTGGAG 1 cut(s) 1466
HaeIII GGCC 2 cut(s) 890, 953
HapII CCGG 3 cut(s) 720, 950, 1228
HhaI GCGC 2 cut(s) 1052, 1243
Hin1II CATG 2 cut(s) 151, 395
Hin6I GCGC 2 cut(s) 1050, 1241
HinP1I GCGC 2 cut(s) 1050, 1241
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 5 cut(s) 1001, 1094, 1199, 1286, 1342
HpaI GTTAAC 1 cut(s) 982
HpaII CCGG 3 cut(s) 720, 950, 1228
HphI GGTGA 2 cut(s) 262, 1447
Hpy166II GTNNAC 5 cut(s) 317, 386, 408, 842, 982
Hpy188I TCNGA 9 cut(s) 330, 714, 1057, 1213, 1291, 1341, 1347, 1461, 1504
Hpy188III TCNNGA 4 cut(s) 433, 720, 1091, 1307
Hpy8I GTNNAC 5 cut(s) 317, 386, 408, 842, 982
Hpy99I CGWCG 2 cut(s) 129, 1108
HpyAV CCTTC 3 cut(s) 287, 784, 1123
HpyCH4IV ACGT 3 cut(s) 124, 810, 1464
HpyCH4V TGCA 4 cut(s) 25, 648, 849, 1072
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 110, 135, 144, 527
HpyF3I CTNAG 5 cut(s) 615, 630, 762, 1210, 1338
HpySE526I ACGT 3 cut(s) 124, 810, 1464
Hsp92II CATG 2 cut(s) 151, 395
HspAI GCGC 2 cut(s) 1050, 1241
Kpn2I TCCGGA 1 cut(s) 719
KspAI GTTAAC 1 cut(s) 982
Kzo9I GATC 4 cut(s) 187, 638, 706, 974
LmnI GCTCC 1 cut(s) 695
Lsp1109I GCAGC 3 cut(s) 156, 508, 1396
LweI GCATC 3 cut(s) 517, 1096, 1396
MaeI CTAG 5 cut(s) 411, 537, 704, 836, 1359
MaeII ACGT 3 cut(s) 124, 810, 1464
MaeIII GTNAC 5 cut(s) 43, 440, 781, 988, 1123
MalI GATC 4 cut(s) 189, 640, 708, 976
MboI GATC 4 cut(s) 187, 638, 706, 974
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 3 cut(s) 359, 700, 1372
MluCI AATT 4 cut(s) 669, 743, 1329, 1450
MlyI GAGTC 2 cut(s) 1010, 1280
MmeI TCCRAC 3 cut(s) 831, 1245, 1457
MroI TCCGGA 1 cut(s) 719
MroXI GAANNNNTTC 2 cut(s) 481, 1296
MseI TTAA 7 cut(s) 335, 725, 873, 921, 981, 1112, 1164
MspCI CTTAAG 1 cut(s) 1163
MspI CCGG 3 cut(s) 720, 950, 1228
MspR9I CCNGG 1 cut(s) 1445
MvaI CCWGG 1 cut(s) 1445
MwoI GCNNNNNNNGC 5 cut(s) 98, 110, 135, 144, 527
NdeII GATC 4 cut(s) 187, 638, 706, 974
NlaIII CATG 2 cut(s) 151, 395
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 481, 1296
PfeI GAWTC 3 cut(s) 1094, 1199, 1342
PfoI TCCNGGA 1 cut(s) 1443
PkrI GCNGC 5 cut(s) 103, 115, 146, 523, 1411
Ple19I CGATCG 1 cut(s) 641
PleI GAGTC 2 cut(s) 1009, 1280
PpsI GAGTC 2 cut(s) 1009, 1280
Psp124BI GAGCTC 1 cut(s) 359
Psp1406I AACGTT 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 1443
PspGI CCWGG 1 cut(s) 1443
PspPI GGNCC 2 cut(s) 314, 1427
PstI CTGCAG 1 cut(s) 1074
PstNI CAGNNNCTG 1 cut(s) 1345
PsuI RGATCY 1 cut(s) 187
PvuI CGATCG 1 cut(s) 641
RsaI GTAC 4 cut(s) 602, 957, 1380, 1467
RsaNI GTAC 4 cut(s) 601, 956, 1379, 1466
SacI GAGCTC 1 cut(s) 359
SaqAI TTAA 7 cut(s) 335, 725, 873, 921, 981, 1112, 1164
SatI GCNGC 5 cut(s) 102, 114, 145, 522, 1410
Sau3AI GATC 4 cut(s) 187, 638, 706, 974
Sau96I GGNCC 2 cut(s) 314, 1427
SchI GAGTC 2 cut(s) 1010, 1280
ScrFI CCNGG 1 cut(s) 1445
SduI GDGCHC 3 cut(s) 359, 700, 1372
SfaNI GCATC 3 cut(s) 517, 1096, 1396
SfcI CTRYAG 3 cut(s) 912, 1070, 1272
SinI GGWCC 2 cut(s) 314, 1427
SmlI CTYRAG 2 cut(s) 1163, 1169
SmoI CTYRAG 2 cut(s) 1163, 1169
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 4 cut(s) 669, 743, 1329, 1450
SsiI CCGC 3 cut(s) 78, 102, 114
SspMI CTAG 5 cut(s) 411, 537, 704, 836, 1359
SstI GAGCTC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 1443
StyI CCWWGG 2 cut(s) 691, 1015
TaiI ACGT 3 cut(s) 127, 813, 1467
TaqI TCGA 4 cut(s) 637, 828, 1106, 1326
TasI AATT 4 cut(s) 669, 743, 1329, 1450
TauI GCSGC 2 cut(s) 104, 116
TfiI GAWTC 3 cut(s) 1094, 1199, 1342
Tru1I TTAA 7 cut(s) 335, 725, 873, 921, 981, 1112, 1164
Tru9I TTAA 7 cut(s) 335, 725, 873, 921, 981, 1112, 1164
TscAI CASTG 5 cut(s) 388, 493, 660, 849, 856
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 144, 521, 1409
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 5 cut(s) 213, 662, 804, 846, 1086
TspRI CASTG 5 cut(s) 388, 493, 660, 849, 856
Vha464I CTTAAG 1 cut(s) 1163
VpaK11BI GGWCC 2 cut(s) 314, 1427
XapI RAATTY 3 cut(s) 669, 743, 1329
XceI RCATGY 1 cut(s) 151
XmnI GAANNNNTTC 2 cut(s) 481, 1296
XspI CTAG 5 cut(s) 411, 537, 704, 836, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.