Rh1CG129500

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
28465891 .. 28471091
5201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG129500.1

Sequence Viewer

Length: 1284 bp
ATGGCGAAAGGTGACGACGCAGTGAGGAAGAAGCTAAACAAGGCCAACAGGAAGAAGCTACGCAAGGATGACCGTTCTTCCTCCTCCGTTACCGCTCGCGTCGCCTCCATTATCGCCGCCAAAAAGCGCCGCCAGTCAGGCAAACGCCGCAAATGCCAGGGTATGTGCTTTAGCCTTCCTACGCTAGAGGATCCCTTCAATGACAGGAATGGTAGAAAGGATTTTGAGAAAGAAACCAAGAAAGTCATGCTTCCACATAGGGATGAGAGTGAGTTTCTCAGGGAAAAATGTAAAGAAATTATTAGAAAGAATGAAAAGGCAAAGAATCCCGGGCTGAAGAATATGAAGGTAACGAGTTTGAAGAATGAGCAGAAGAAATCACTCCGGTTTACGTCTATTGATAGCGCGGTGCAGAGAAGCAGAATTGACTCAGTTAGGACAAAGACTCAGCTGAGTGGGAAACAGGAAGAGGCCTGCGAAAACTCAGATTGTCCGTCCAAGTATCTGATTCGGTGTTTGAATGAAATTGAGAATTCACTGCGTTGTGATGGTACCTACAGTAATGAGGAGGACAAGCCATTATTTGTTAGTACCTGGGGAGTTGAGTTTTGGAAATGTTATTCAGCTGGAAAGGATATATTAGAGACAAGTGGAACTTCTTCGACAATAGAGCAAATTGCATGGATTGTTTCCAGTGCTGCTGATTCAATTTCTAGAAAGGATGAAGAAGGTCCACCAGCCACCAGTCCATTTCTTTTGTTCCTTGTTGCATCTCAGGAGAAAGCAGCCAAGGTGCGTTCAGTGTGCAAACCTTTGAAGGTTCTTGGAATACATACAGTGAGTATACACCCTGGTGCTTCCTTAGATCACCAGATTCAAGGTCTGAAGAGTTCGGAGCCTGAGTTTATGATCTCAACACCTGAGAGACTCTTGGAGCTTCTTTCCTTGAAGGCCATTGATCTATCAGGGGTTTCTTGGCTGATCGTTGATGGACTGGAGTCTTTTCATAAACATGGTTATCTTGATAAAGTAAATTCCATCCGAAATTATATATCCAGAACAACCCGTGCAGTTGTTTTTGAAGATTGTTTTAGACGTGCCTGTGTACCAGTGGTGCAAACTCTTCTGATAGGATCAGTCCATAGATTATCTCTGAATAATTCAGTCACCAGTCAAAGTGCATGCATCATTCAGTCAGTAAACATGTCTTCACTGAAAGAAAAACTATCAAAGGTATGTATTTCTCAAACACCTACTTTCTGTATGAGTTGCAATCAACGGTAA

Protein Analysis

427

Amino Acids

47.95

Weight (kDa)

9.46

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 253 - 352 8.5e-06 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 844
AccII CGCG 2 cut(s) 99, 407
AciI CCGC 5 cut(s) 93, 117, 130, 148, 407
AclWI GGATC 3 cut(s) 185, 198, 1141
AcsI RAATTY 2 cut(s) 532, 1033
AcuI CTGAAG 2 cut(s) 356, 905
AfaI GTAC 3 cut(s) 553, 592, 1107
AflIII ACRYGT 1 cut(s) 1203
AgsI TTSAA 8 cut(s) 199, 361, 520, 708, 817, 878, 949, 1082
AjiI CACGTC 1 cut(s) 1097
AjnI CCWGG 3 cut(s) 156, 593, 850
AleI CACNNNNGTG 1 cut(s) 852
AluBI AGCT 5 cut(s) 34, 58, 451, 626, 937
AluI AGCT 5 cut(s) 34, 58, 451, 626, 937
Alw26I GTCTC 2 cut(s) 638, 919
AlwI GGATC 3 cut(s) 185, 198, 1141
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 3 cut(s) 42, 471, 951
ApeKI GCWGC 2 cut(s) 698, 785
ApoI RAATTY 2 cut(s) 532, 1033
Asp700I GAANNNNTTC 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 2 cut(s) 129, 407
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 2 cut(s) 330, 331
AsuHPI GGTGA 3 cut(s) 23, 860, 1159
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 731
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 1200
BbvI GCAGC 2 cut(s) 685, 797
BccI CCATC 3 cut(s) 542, 983, 1046
BciT130I CCWGG 3 cut(s) 158, 595, 852
BcnI CCSGG 2 cut(s) 330, 331
BcoDI GTCTC 2 cut(s) 638, 919
BfaI CTAG 2 cut(s) 185, 714
BfmI CTRYAG 1 cut(s) 556
BfoI RGCGCY 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 5 cut(s) 117, 130, 148, 699, 786
BlsI GCNGC 5 cut(s) 118, 131, 149, 700, 787
Bme1390I CCNGG 5 cut(s) 158, 330, 331, 595, 852
Bme18I GGWCC 1 cut(s) 731
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 1097
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 3 cut(s) 192, 553, 897
BmrFI CCNGG 5 cut(s) 158, 330, 331, 595, 852
BmsI GCATC 2 cut(s) 779, 1194
BoxI GACNNNNGTC 1 cut(s) 997
BpiI GAAGAC 1 cut(s) 1200
BpmI CTGGAG 1 cut(s) 1016
BpuMI CCSGG 2 cut(s) 330, 331
BsaJI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bse1I ACTGG 6 cut(s) 133, 693, 744, 999, 1109, 1170
BseBI CCWGG 3 cut(s) 158, 595, 852
BseDI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BseGI GGATG 4 cut(s) 73, 268, 727, 1038
BseMII CTCAG 8 cut(s) 292, 443, 444, 461, 498, 788, 891, 912
BseNI ACTGG 6 cut(s) 133, 693, 744, 999, 1109, 1170
BseRI GAGGAG 2 cut(s) 73, 581
BseXI GCAGC 2 cut(s) 685, 797
BsgI GTGCAG 2 cut(s) 431, 1089
Bsh1236I CGCG 2 cut(s) 99, 407
BshFI GGCC 3 cut(s) 44, 473, 953
BshNI GGYRCC 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 2 cut(s) 330, 385
BsmAI GTCTC 2 cut(s) 638, 919
BsnI GGCC 3 cut(s) 44, 473, 953
BsoBI CYCGRG 1 cut(s) 329
Bsp143I GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
BspACI CCGC 5 cut(s) 93, 117, 130, 148, 407
BspANI GGCC 3 cut(s) 44, 473, 953
BspCNI CTCAG 8 cut(s) 291, 443, 444, 460, 497, 787, 892, 913
BspFNI CGCG 2 cut(s) 99, 407
BspLI GGNNCC 3 cut(s) 192, 553, 897
BspPI GGATC 3 cut(s) 185, 198, 1141
BspT107I GGYRCC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 6 cut(s) 133, 693, 744, 999, 1109, 1170
BssECI CCNNGG 5 cut(s) 157, 329, 594, 789, 850
BssMI GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
BssNAI GTATAC 1 cut(s) 845
BssT1I CCWWGG 1 cut(s) 789
Bst1107I GTATAC 1 cut(s) 845
Bst2UI CCWGG 3 cut(s) 158, 595, 852
Bst4CI ACNGT 4 cut(s) 74, 560, 838, 1281
Bst6I CTCTTC 3 cut(s) 462, 881, 1128
BstC8I GCNNGC 3 cut(s) 97, 475, 1183
BstDEI CTNAG 9 cut(s) 278, 430, 447, 452, 484, 774, 862, 900, 921
BstF5I GGATG 4 cut(s) 73, 268, 727, 1038
BstFNI CGCG 2 cut(s) 99, 407
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 129, 407
BstKTI GATC 6 cut(s) 193, 868, 912, 961, 984, 1136
BstMAI GTCTC 2 cut(s) 638, 919
BstMBI GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
BstMWI GCNNNNNNNGC 4 cut(s) 101, 138, 147, 153
BstNI CCWGG 3 cut(s) 158, 595, 852
BstNSI RCATGY 2 cut(s) 1185, 1207
BstPAI GACNNNNGTC 1 cut(s) 997
BstSCI CCNGG 5 cut(s) 156, 328, 329, 593, 850
BstSFI CTRYAG 1 cut(s) 556
BstUI CGCG 2 cut(s) 99, 407
BstV1I GCAGC 2 cut(s) 685, 797
BstV2I GAAGAC 1 cut(s) 1200
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 845
BsuRI GGCC 3 cut(s) 44, 473, 953
BtrI CACGTC 1 cut(s) 1097
BtsCI GGATG 4 cut(s) 73, 268, 727, 1038
BtsI GCAGTG 2 cut(s) 27, 536
BtsIMutI CAGTG 7 cut(s) 27, 536, 700, 807, 843, 1116, 1211
Cac8I GCNNGC 3 cut(s) 97, 475, 1183
CfoI GCGC 2 cut(s) 129, 407
Cfr13I GGNCC 1 cut(s) 731
Cfr9I CCCGGG 1 cut(s) 329
CseI GACGC 2 cut(s) 26, 88
Csp6I GTAC 3 cut(s) 552, 591, 1106
CviAII CATG 5 cut(s) 247, 681, 1013, 1182, 1204
CviQI GTAC 3 cut(s) 552, 591, 1106
DdeI CTNAG 9 cut(s) 278, 430, 447, 452, 484, 774, 862, 900, 921
DpnI GATC 6 cut(s) 192, 867, 911, 960, 983, 1135
DpnII GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
Eam1104I CTCTTC 3 cut(s) 462, 881, 1128
EarI CTCTTC 3 cut(s) 462, 881, 1128
Eco130I CCWWGG 1 cut(s) 789
Eco147I AGGCCT 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 731
Eco57I CTGAAG 2 cut(s) 356, 905
Eco88I CYCGRG 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 3 cut(s) 156, 593, 850
EcoT14I CCWWGG 1 cut(s) 789
EcoT22I ATGCAT 1 cut(s) 1187
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 5 cut(s) 250, 684, 1016, 1185, 1207
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 640, 672
FatI CATG 5 cut(s) 246, 680, 1012, 1181, 1203
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 5 cut(s) 117, 130, 148, 699, 786
FokI GGATG 4 cut(s) 80, 275, 734, 1025
Fsp4HI GCNGC 5 cut(s) 117, 130, 148, 699, 786
FspBI CTAG 2 cut(s) 185, 714
GlaI GCGC 2 cut(s) 128, 406
GluI GCNGC 5 cut(s) 117, 130, 148, 699, 786
GsuI CTGGAG 1 cut(s) 1016
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 3 cut(s) 44, 473, 953
HapII CCGG 2 cut(s) 330, 385
HgaI GACGC 2 cut(s) 26, 88
HhaI GCGC 2 cut(s) 129, 407
Hin1II CATG 5 cut(s) 250, 684, 1016, 1185, 1207
Hin6I GCGC 2 cut(s) 127, 405
HinP1I GCGC 2 cut(s) 127, 405
HinfI GANTC 8 cut(s) 325, 428, 445, 508, 704, 874, 927, 998
HpaII CCGG 2 cut(s) 330, 385
HphI GGTGA 3 cut(s) 23, 860, 1159
Hpy166II GTNNAC 5 cut(s) 390, 734, 845, 1106, 1201
Hpy188I TCNGA 7 cut(s) 487, 507, 885, 895, 1043, 1128, 1155
Hpy188III TCNNGA 4 cut(s) 714, 776, 1022, 1056
Hpy8I GTNNAC 5 cut(s) 390, 734, 845, 1106, 1201
Hpy99I CGWCG 2 cut(s) 20, 104
HpyAV CCTTC 6 cut(s) 185, 205, 340, 722, 811, 943
HpyCH4III ACNGT 4 cut(s) 74, 560, 838, 1281
HpyCH4IV ACGT 2 cut(s) 392, 1096
HpyCH4V TGCA 9 cut(s) 412, 680, 770, 807, 1070, 1117, 1181, 1185, 1272
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 138, 147, 153
HpyF3I CTNAG 9 cut(s) 278, 430, 447, 452, 484, 774, 862, 900, 921
HpySE526I ACGT 2 cut(s) 392, 1096
Hsp92II CATG 5 cut(s) 250, 684, 1016, 1185, 1207
HspAI GCGC 2 cut(s) 127, 405
KpnI GGTACC 1 cut(s) 555
Kzo9I GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
LmnI GCTCC 2 cut(s) 895, 934
Lsp1109I GCAGC 2 cut(s) 685, 797
LweI GCATC 2 cut(s) 779, 1194
MaeI CTAG 2 cut(s) 185, 714
MaeII ACGT 2 cut(s) 392, 1096
MaeIII GTNAC 4 cut(s) 11, 88, 349, 1165
MalI GATC 6 cut(s) 192, 867, 911, 960, 983, 1135
MbiI CCGCTC 1 cut(s) 95
MboI GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
MflI RGATCY 1 cut(s) 190
MluCI AATT 9 cut(s) 297, 423, 525, 532, 675, 708, 1033, 1045, 1159
MlyI GAGTC 4 cut(s) 422, 439, 921, 1007
MnlI CCTC 8 cut(s) 18, 91, 94, 115, 181, 463, 559, 562
Mph1103I ATGCAT 1 cut(s) 1187
MroXI GAANNNNTTC 1 cut(s) 658
MslI CAYNNNNRTG 3 cut(s) 261, 852, 1011
MspA1I CMGCKG 2 cut(s) 451, 626
MspI CCGG 2 cut(s) 330, 385
MspR9I CCNGG 5 cut(s) 158, 330, 331, 595, 852
MvaI CCWGG 3 cut(s) 158, 595, 852
MvnI CGCG 2 cut(s) 99, 407
MwoI GCNNNNNNNGC 4 cut(s) 101, 138, 147, 153
NciI CCSGG 2 cut(s) 330, 331
NdeII GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
NlaIII CATG 5 cut(s) 250, 684, 1016, 1185, 1207
NlaIV GGNNCC 3 cut(s) 192, 553, 897
NmuCI GTSAC 2 cut(s) 11, 1165
NsiI ATGCAT 1 cut(s) 1187
NspI RCATGY 2 cut(s) 1185, 1207
OliI CACNNNNGTG 1 cut(s) 852
PaeI GCATGC 1 cut(s) 1185
PceI AGGCCT 1 cut(s) 473
PciI ACATGT 1 cut(s) 1203
PdmI GAANNNNTTC 1 cut(s) 658
PfeI GAWTC 4 cut(s) 325, 508, 704, 874
PkrI GCNGC 5 cut(s) 118, 131, 149, 700, 787
PleI GAGTC 4 cut(s) 422, 439, 921, 1006
PpsI GAGTC 4 cut(s) 422, 439, 921, 1006
PscI ACATGT 1 cut(s) 1203
PshAI GACNNNNGTC 1 cut(s) 997
Psp6I CCWGG 3 cut(s) 156, 593, 850
PspGI CCWGG 3 cut(s) 156, 593, 850
PspN4I GGNNCC 3 cut(s) 192, 553, 897
PspPI GGNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 451, 626
RsaI GTAC 3 cut(s) 553, 592, 1107
RsaNI GTAC 3 cut(s) 552, 591, 1106
RseI CAYNNNNRTG 3 cut(s) 261, 852, 1011
SatI GCNGC 5 cut(s) 117, 130, 148, 699, 786
Sau3AI GATC 6 cut(s) 190, 865, 909, 958, 981, 1133
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 4 cut(s) 422, 439, 921, 1007
ScrFI CCNGG 5 cut(s) 158, 330, 331, 595, 852
SfaNI GCATC 2 cut(s) 779, 1194
SfcI CTRYAG 1 cut(s) 556
SinI GGWCC 1 cut(s) 731
SmaI CCCGGG 1 cut(s) 331
SmiMI CAYNNNNRTG 3 cut(s) 261, 852, 1011
SphI GCATGC 1 cut(s) 1185
Sse9I AATT 9 cut(s) 297, 423, 525, 532, 675, 708, 1033, 1045, 1159
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 5 cut(s) 93, 117, 130, 148, 407
SspMI CTAG 2 cut(s) 185, 714
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 5 cut(s) 156, 328, 329, 593, 850
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 4 cut(s) 74, 560, 838, 1281
TaiI ACGT 2 cut(s) 395, 1099
TaqI TCGA 1 cut(s) 662
TasI AATT 9 cut(s) 297, 423, 525, 532, 675, 708, 1033, 1045, 1159
TauI GCSGC 3 cut(s) 119, 132, 150
TfiI GAWTC 4 cut(s) 325, 508, 704, 874
TscAI CASTG 7 cut(s) 27, 543, 700, 807, 843, 1116, 1218
TseFI GTSAC 2 cut(s) 11, 1165
TseI GCWGC 2 cut(s) 698, 785
Tsp45I GTSAC 2 cut(s) 11, 1165
TspDTI ATGAA 5 cut(s) 327, 359, 537, 738, 995
TspGWI ACGGA 2 cut(s) 76, 483
TspMI CCCGGG 1 cut(s) 329
TspRI CASTG 7 cut(s) 27, 543, 700, 807, 843, 1116, 1218
VpaK11BI GGWCC 1 cut(s) 731
XapI RAATTY 2 cut(s) 532, 1033
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 2 cut(s) 1185, 1207
XmaI CCCGGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 658
XspI CTAG 2 cut(s) 185, 714
Zsp2I ATGCAT 1 cut(s) 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.